Seawater samples at 54 stations in the year 2011–2012 from Chidiyatappu, Port Blair, Rangat and Aerial Bays of Andaman Sea, have been investigated in the present study. Datasets obtained have been converted into simple maps using coastal water quality index (CWQI) and Geographical Information System (GIS) based overlay mapping technique to demarcate healthy and polluted areas. Analysis of multiple parameters revealed poor water quality in Port Blair and Rangat Bays. The anthropogenic activities may be the likely cause for poor water quality. Whereas, good water quality was witnessed at Chidiyatappu Bay. Higher CWQI scores were perceived in the open sea. However, less exploitation of coastal resources owing to minimal anthropogenic activity indicated good water quality index at Chidiyatappu Bay. This study is an attempt to integrate CWQI and GIS based mapping technique to derive a reliable, simple and useful output for water quality monitoring in coastal environment.

Assessing the environmental impact of salmon farms on benthic systems is traditionally undertaken using biotic indices derived from microscopic analyses of macrobenthic infaunal (MI) communities. In this study, we tested the applicability of using foraminiferal-specific high-throughput sequencing (HTS) metabarcoding for monitoring these habitats. Sediment samples and physico-chemical data were collected along an enrichment gradient radiating out from three Chinook salmon (Oncorhynchus tshawytscha) farms in New Zealand. HTS of environmental DNA and RNA (eDNA/eRNA) resulted in 1,875,300 sequences that clustered into 349 Operational Taxonomic Units. Strong correlations were observed among various biotic indices calculated from MI data and normalized fourth-root transformed HTS data. Correlations were stronger using eRNA compared to eDNA data. Quantile regression spline analyses identified 12 key foraminiferal taxa that have potential to be used as bioindicator species. This study demonstrates the huge potential for using this method for biomonitoring of fish-farming and other marine industrial activities.

This work investigates the dependence of the sampling rate (Rs) of semi-permeable membrane devices (SPMDs) on flow rate and temperature. The in situ Rs values were obtained using performance reference compounds (PRCs) with weighted polynomial regression and used to estimate the bioavailable polycyclic aromatic hydrocarbon (PAH) concentrations in seawater. The in situ Rs values did not vary with flow rate and temperature. The empirical equation of the Rs value from the SPMDs was established. This infers that PRCs could be avoided by using an established empirical equation under similar field conditions. The sum of the bioavailable PAHs ranged from 0.281 to 0.611ngL−1 on the eastern side of the Taiwan Strait and from 0.438 to 1.10ngL−1 on the western side. Distinct sources and toxicity of these bioavailable PAHs were observed and mainly resulted from different types of energy consumption.

Sampling frequency is important to obtain sufficient information for temporal research of microfauna. To determine an optimal strategy for exploring the seasonal variation in ciliated protozoa, a dataset from the Yellow Sea, northern China was studied. Samples were collected with 24 (biweekly), 12 (monthly), 8 (bimonthly per season) and 4 (seasonally) sampling events. Compared to the 24 samplings (100%), the 12-, 8- and 4-samplings recovered 94%, 94%, and 78% of the total species, respectively. To reveal the seasonal distribution, the 8-sampling regime may result in >75% information of the seasonal variance, while the traditional 4-sampling may only explain <65% of the total variance. With the increase of the sampling frequency, the biotic data showed stronger correlations with seasonal variables (e.g., temperature, salinity) in combination with nutrients. It is suggested that the 8-sampling events per year may be an optimal sampling strategy for ciliated protozoan seasonal research in marine ecosystems.

To control algae bloom and eutrophication in the tropical semi-closed harbor of the Hongsha Bay in Sanya, China, polyculture systems with macroalgae Eucheuma gelatinae and bivalves Gafrarium tumidum were studied. First, nine polyculture combinations with E. gelatinae and G. tumidum were selected in a pool. Two combinations were then chosen by response surface analysis and used for further study to validate their effect on controlling the microalgae density and reducing the nutrition concentration in the pool. Subsequently, the two selected combinations were used to study the effect on the purification of eutrophic seawater and control of algae bloom in a sea mesocosm. The results indicated that polyculture with E. gelatinae and G. tumidum enhanced the purification of eutrophic seawater and control of algae bloom. These two polyculture combinations are considered suitable for the Hongsha Bay of Sanya in China. The two combinations present an excellent effect on controlling the microalgae density and reducing the nutrition concentration.

Few water quality measurements exist from pristine environments, with fewer reported studies of coastal water quality from Solomon Islands. Water quality benchmarks for the Solomons have relied on data from other geographic regions, often from quite different higher latitude developed nations, with large land masses. We present the first data of inshore turbidity and sedimentation rate for a pristine catchment on Isabel Island. Surveys recorded relatively high coral cover. The lowest cover was recorded at 22.7% (Jejevo) despite this site having a mean turbidity (continuous monitoring) of 32 NTU. However, a similar site (Jihro) was significantly less turbid (2.1 mean NTU) over the same period. This difference in turbidity is likely due to natural features of the Jihro River promoting sedimentation before reaching coastal sites. We provide an important baseline for Solomon Island inshore systems, whilst demonstrating the importance of continuous monitoring to capture episodic high turbidity events.

Environmental epigenetics investigates the cause-effect relationships between specific environmental factors and the subsequent epigenetic modifications triggering adaptive responses in the cell. Given the dynamic and potentially reversible nature of the different types of epigenetic marks, environmental epigenetics constitutes a promising venue for developing fast and sensible biomonitoring programs. Indeed, several epigenetic biomarkers have been successfully developed and applied in traditional model organisms (e.g., human and mouse). Nevertheless, the lack of epigenetic knowledge in other ecologically and environmentally relevant organisms has hampered the application of these tools in a broader range of ecosystems, most notably in the marine environment. Fortunately, that scenario is now changing thanks to the growing availability of complete reference genome sequences along with the development of high-throughput DNA sequencing and bioinformatic methods. Altogether, these resources make the epigenetic study of marine organisms (and more specifically marine invertebrates) a reality. By building on this knowledge, the present work provides a timely perspective highlighting the extraordinary potential of environmental epigenetic analyses as a promising source of rapid and sensible tools for pollution biomonitoring, using marine invertebrates as sentinel organisms. This strategy represents an innovative, groundbreaking approach, improving the conservation and management of natural resources in the oceans.

Four biota species were collected from mangrove ecosystems of the Pearl River Estuary to investigate the bioaccumulation and biomagnification of polychlorinated biphenyls (PCBs), dichlorodiphenyltrichloroethane (DDT), polybrominated diphenyl ethers (PBDEs), dechlorane plus (DP), and decabromodiphenyl ethane (DBDPE). Concentrations of ΣPCBs, ΣDDTs, ΣPBDEs, DP, DBDPE and anti-Cl11-DP (the dechlorination product of anti-DP) in mangrove biota ranged from 32.1–466, 153–3819, 3.88–59.8, 0.18–6.88, not detected (nd)–30.6 and nd–2.65ng/g lipid weight, respectively. Daggertooth pike conger (Muraenesox cinereus) had higher concentrations of contaminants than the other three biota species. Significant positive relationship between anti-Cl11-DP and anti-DP levels was observed in mangrove biota. DDTs were the predominant HOPs in all biota species, followed by PCBs and PBDEs. All the target compounds exhibited biomagnification, with biomagnification factors greater than 1 in the studied feeding relationships. Food web magnification was found for ΣPCBs, ΣDDTs, ΣPBDEs and DP, with trophic magnification factors of 2.76, 2.61, 2.20 and 2.31, respectively.

A growing body of evidence suggests that the jellyfish population in Chinese seas is increasing, and decomposition of jellyfish strongly influences the marine ecosystem. This study investigated the change in water quality during Cyanea nozakii decomposition using simulation experiments. The results demonstrated that the amount of dissolved nutrients released by jellyfish was greater than the amount of particulate nutrients. NH4+ was predominant in the dissolved matter, whereas the particulate matter was dominated by organic nitrogen and inorganic phosphorus. The high N/P ratios demonstrated that jellyfish decomposition may result in high nitrogen loads. The inorganic nutrients released by C. nozakii decomposition were important for primary production. Jellyfish decomposition caused decreases in the pH and oxygen consumption associated with acidification and hypoxia or anoxia; however, sediments partially mitigated the changes in the pH and oxygen. These results imply that jellyfish decomposition can result in potentially detrimental effects on marine environments.

Although the Passagem Channel estuary, Espírito Santo State, Brazil, is located in an urbanized and industrialized region, it has a large mangrove system. Here we examined natural and anthropogenic inputs that may influence trace metal (Cd, Cr, Cu, Ni, Sc, Pb and Zn) and hydrocarbon (n-alkane and terpane) deposition in three sediment cores collected in the tidal flat zone of the estuary. The cores were also analyzed for carbonate, grain size and stable isotopic composition (δ13Corg. and δ15Ntotal). Metal enrichment and its association to petroleum hydrocarbons in the surficial sediments of one of the cores, indicate crude oil and derivative inputs, possibly from small vessels and road run-off from local heavy automobile traffic. At the landward sites, the major contributions for metals and hydrocarbons are from natural sources, but in one case, Cu may have been enriched by domestic effluent inputs.