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Single spectral imagery and faster R-CNN to identify hazardous and noxious substances spills Texte intégral
2020
Huang, Hui | Wang, Chao | Liu, Shuchang | Sun, Zehao | Zhang, Dezhun | Liu, Caicai | Jiang, Yang | Zhan, Shuyue | Zhang, Haofei | Xu, Ren
The automatic identification (location, segmentation, and classification) by UAV- based optical imaging of spills of transparent floating Hazardous and Noxious Substances (HNS) benefits the on-site response to spill incidents, but it is also challenging. With a focus on the on-site optical imaging of HNS, this study explores the potential of single spectral imaging for HNS identification using the Faster R-CNN architecture. Images at 365 nm (narrow UV band), blue channel images (visible broadband of ∼400–600 nm), and RGB images of typical HNS (benzene, xylene, and palm oil) in different scenarios were studied with and without Faster R-CNN. Faster R-CNN was applied to locate and classify the HNS spills. The segmentation using Faster R-CNN-based methods and the original masking methods, including Otsu, Max entropy, and the local fuzzy thresholding method (LFTM), were investigated to explore the optimal wavelength and corresponding image processing method for the optical imaging of HNS. We also compared the classification and segmentation results of this study with our previously published studies on multispectral and whole spectral images. The results demonstrated that single spectral UV imaging at 365 nm combined with Faster R-CNN has great potential for the automatic identification of transparent HNS floating on the surface of the water. RGB images and images using Faster R-CNN in the blue channel are capable of HNS segmentation.
Afficher plus [+] Moins [-]Role of the proteome in providing phenotypic stability in control and ectomycorrhizal poplar plants exposed to chronic mild Pb stress Texte intégral
2020
Szuba, Agnieszka | Marczak, Łukasz | Kozłowski, Rafał
Lead is a dangerous pollutant that accumulates in plant tissues and causes serious damage to plant cell macromolecules. However, plants have evolved numerous tolerance mechanisms, including ectomycorrhizae, to maintain cellular Pb²⁺ at the lowest possible level. When those mechanisms are successful, Pb-exposed plants should exhibit no negative phenotypic changes. However, actual molecular-level plant adjustments at Pb concentrations below the toxicity threshold are largely unknown, similar to the molecular effects of protective ectomycorrhizal root colonization. In this study, we (1) determined the molecular adjustments in plants exposed to Pb but without visible Pb stress symptoms and (2) examined ectomycorrhizal root colonization (the role of fungal biofilters) with respect to molecular-level Pb perception by plant root cells. Biochemical, microscopic, proteomic and metabolomic studies were performed to determine the molecular status of Populus × canescens microcuttings grown in agar medium enriched with 0.75 mM Pb(NO₃)₂. Noninoculated and inoculated with Paxillus involutus poplars were analyzed in two independent comparisons of the corresponding control and Pb treatments. After six weeks of growth, Pb caused no negative phenotypic effects. No Pb-exposed poplar showed impaired growth or decreased leaf pigmentation. Proteomic signals of intensified Pb sequestration in the plant cell wall and vacuoles, cytoskeleton modifications, H⁺-ATPase-14-3-3 interactions, and stabilization of protein turnover in chronically Pb-exposed plants co-occurred with high metabolomic stability. There were no differentially abundant root primary metabolites; only a few differentially abundant root secondary metabolites and no Pb-triggered ROS burst were observed. Our results strongly suggest that proteome adjustments targeting Pb sequestration and ROS scavenging, which are considerably similar but less intensive in ectomycorrhizal poplars than in control poplars due to the P. involutus biofilter (as confirmed in a mineral study), were responsible for the metabolomic and phenotypic stability of poplars exposed to chronic mild Pb stress.
Afficher plus [+] Moins [-]First report on the presence of small microplastics (≤ 3 μm) in tissue of the commercial fish Serranus scriba (Linnaeus. 1758) from Tunisian coasts and associated cellular alterations Texte intégral
2020
Zitouni, Nesrine | Bousserrhine, Noureddine | Belbekhouche, Sabrina | Missawi, Omayma | Alphonse, Vanessa | Boughatass, Iteb | Banni, Mohamed
There is limited research on the ingestion of microplastic particles (MPs) by fish from the southern part of the Mediterranean Sea. This study provides the occurrence of small MPs (≤3 μm) in the gastrointestinal tract and muscle of adult benthopelagic fish Serranus scriba (L.1758), caught along Tunisian coasts. MPs were extracted from selected tissues using a potassium hydroxide digestion method (KOH 10%) and then quantified, and their chemical structure was characterized through Raman microspectroscopy. The results highlighted that MPs were present in all samples. The average abundance of MPs per gram of fish tissue identified through successive filters of 3 μm, 1.2 μm, and 0.45 μm differed significantly among the sites. The properties of the MPs extracted indicated that polyethylene-vinyl-acetate (PEVA: 33.45%), high density polyethylene (HD-PE: 17.33%), and fragments were the most abundant plastic types and shape found, respectively. Among those, most MPs were found at a size class of 3–1.2 μm (∼60%), especially in the muscle, suggesting a high transfer of MPs into the human diet. Our field work also aimed to explore the effects observed in the gastrointestinal tract with a battery of biomarkers assessing oxidative stress and neurotoxicity. The preliminary results of this study showed the existence of a link between small MPs, sites, and their associated urban activities and induced oxidative stress. However, more detailed studies are required to evaluate the transfer of MPs into tissues and the potential impacts of this transfer on human health.
Afficher plus [+] Moins [-]Persistent organic pollutants exposure in newborn dried blood spots and infant weight status: A case-control study of low-income Hispanic mother-infant pairs Texte intégral
2020
Gross, Rachel S. | Ghassabian, Akhgar | Vandyousefi, Sarvenaz | Messito, Mary Jo | Gao, Chongjing | Kannan, Kurunthachalam | Trasande, Leonardo
Persistent organic pollutants (POPs) are believed to alter metabolic homeostasis during fetal development, leading to childhood obesity. However, limited studies have explored how fetal chemical exposures relate to birth and infant weight outcomes in low-income Hispanic families at the highest risk of obesity. Therefore, we sought to determine associations between neonatal POPs exposure measured in newborn dried blood spots (DBS) and prenatal diet quality, birth weight, and overweight status at 18 months old. We conducted a case-control study nested within the Starting Early Program randomized controlled trial comparing POPs concentrations in infants with healthy weight (n = 46) and overweight status (n = 52) at age 18 months. Three categories of POPs, organochlorine pesticides (OCPs), polybrominated diphenyl ethers (PBDEs) and perfluoroalkyl substances (PFASs) were measured in archived newborn DBS. We assessed correlations between prenatal diet quality and neonatal POPs concentrations. Multivariable regression analyses examined associations between POPs (dichotomized at the mean) and birth weight z-score and weight status at 18 months, controlling for confounders. Seven of eight chemicals had detectable levels in greater than 94% of the sample. Higher protein, sodium and refined grain intake during pregnancy were correlated with lower POPs in newborn DBS. We found that high concentrations of perfluorooctanesulfonate (unstandardized coefficient [B]: −0.62, 95% confidence interval [CI]: −0.96 to −0.29) and perfluorohexanesulfate (B: −0.65, 95% CI: −0.99 to −0.31) were related to lower birth weight z-scores compared to those with low concentrations. We did not find associations between PBDEs, OCPs, and the other PFASs with birth weight z-scores, or between any POPs and weight status at 18 months. In conclusion, two PFASs were associated with lower birth weight, an important indicator of child health and growth, although direct associations with infant overweight status were not found. Whether neonatal POPs exposures contribute to economic and ethnic disparities in early obesity remains unclear.
Afficher plus [+] Moins [-]Low O2 level enhances CH4-derived carbon flow into microbial communities in landfill cover soils Texte intégral
2020
He, Ruo | Su, Yao | Leewis, Mary-Cathrine | Chu, Yi-Xuan | Wang, Jing | Ma, Ruo-Chan | Wu, Donglei | Zhan, Liang-Tong | Herriott, Ian Charold | Leigh, Mary Beth
CH₄ oxidation in landfill cover soils plays a significant role in mitigating CH₄ release to the atmosphere. Oxygen availability and the presence of co-contaminants are potentially important factors affecting CH₄ oxidation rate and the fate of CH₄-derived carbon. In this study, microbial populations that oxidize CH₄ and the subsequent conversion of CH₄-derived carbon into CO₂, soil organic C and biomass C were investigated in landfill cover soils at two O₂ tensions, i.e., O₂ concentrations of 21% (“sufficient”) and 2.5% (“limited”) with and without toluene. CH₄-derived carbon was primarily converted into CO₂ and soil organic C in the landfill cover soils, accounting for more than 80% of CH₄ oxidized. Under the O₂-sufficient condition, 52.9%–59.6% of CH₄-derived carbon was converted into CO₂ (CECO₂₋C), and 29.1%–39.3% was converted into soil organic C (CEₒᵣgₐₙᵢc₋C). A higher CEₒᵣgₐₙᵢc₋C and lower CECO₂₋C occurred in the O₂-limited environment, relative to the O₂-sufficient condition. With the addition of toluene, the carbon conversion efficiency of CH₄ into biomass C and organic C increased slightly, especially in the O₂-limited environment. A more complex microbial network was involved in CH₄ assimilation in the O₂-limited environment than under the O₂-sufficient condition. DNA-based stable isotope probing of the community with ¹³CH₄ revealed that Methylocaldum and Methylosarcina had a higher relative growth rate than other type I methanotrophs in the landfill cover soils, especially at the low O₂ concentration, while Methylosinus was more abundant in the treatment with both the high O₂ concentration and toluene. These results indicated that O₂-limited environments could prompt more CH₄-derived carbon to be deposited into soils in the form of biomass C and organic C, thereby enhancing the contribution of CH₄-derived carbon to soil community biomass and functionality of landfill cover soils (i.e. reduction of CO₂ emission).
Afficher plus [+] Moins [-]Feathers and hair as tools for non-destructive pollution exposure assessment in a mining site of the Iberian Pyrite Belt Texte intégral
2020
Gil-Jiménez, Esperanza | Mateo, Rafael | de Lucas, Manuela | Ferrer, Miguel
Feathers and hair as tools for non-destructive pollution exposure assessment in a mining site of the Iberian Pyrite Belt Texte intégral
2020
Gil-Jiménez, Esperanza | Mateo, Rafael | de Lucas, Manuela | Ferrer, Miguel
Mining is responsible of releasing trace elements to the environment with potential negative effects on wildlife. Traditionally, wildlife exposure assessment has been developed by analyzing mainly environmental compartments or internal tissues. Nowadays, the use of non-destructive matrices such as hair or feathers has increased. Nevertheless, its use in free-living terrestrial mammals or in birds other than raptors or passerines is less frequent. The main objective of our study was to determine the potential for hair and feathers in a rabbit and bird species to be used as non-invasive proxy tissues for assessing internal metal concentrations at polluted sites from mining. We tested whether hair of European rabbit (Oryctolagus cuniculus) and feathers of red-legged partridge (Alectoris rufa) can be used as non-destructive biological monitoring tools of both essential (Cu, Zn) and non-essential (Pb, Cd, As) trace elements in a currently active copper mining site. We found significant different concentrations, particularly in non-essential elements, between reference area and mining site. Non-essential elements Pb and Cd showed higher correlations between tissues and hair/feathers, while few significant patterns were observed for essential elements such as Cu and Zn. Although feathers showed lower levels of correlation with internal tissues than hair, both could be useful as non-destructive biological monitoring tools. Further tissues, and more importantly, hair and feathers allowed discrimination between polluted and reference sites to indicate bioavailability and pollution status. In addition, hair and feathers can be used in monitoring pollution of an active mining site, being specially interesting for biomonitoring a certain period of time in the event of a particular episode of pollution, in addition to the chronic exposure. As occurred with hair in rabbits, feathers seem to be a good compartment to detect differences between a potential polluted area, such the surrounding of an active mine site, and a non-polluted area.
Afficher plus [+] Moins [-]Feathers and hair as tools for non-destructive pollution exposure assessment in a mining site of the Iberian Pyrite Belt Texte intégral
2020
Gil-Jiménez, Esperanza | Mateo, Rafael | Lucas, Manuela de | Ferrer, Miguel | Fundación Migres
Mining is responsible of releasing trace elements to the environment with potential negative effects on wildlife. Traditionally, wildlife exposure assessment has been developed by analyzing mainly environmental compartments or internal tissues. Nowadays, the use of non-destructive matrices such as hair or feathers has increased. Nevertheless, its use in free-living terrestrial mammals or in birds other than raptors or passerines is less frequent. The main objective of our study was to determine the potential for hair and feathers in a rabbit and bird species to be used as non-invasive proxy tissues for assessing internal metal concentrations at polluted sites from mining. We tested whether hair of European rabbit (Oryctolagus cuniculus) and feathers of red-legged partridge (Alectoris rufa) can be used as non-destructive biological monitoring tools of both essential (Cu, Zn) and non-essential (Pb, Cd, As) trace elements in a currently active copper mining site. We found significant different concentrations, particularly in non-essential elements, between reference area and mining site. Non-essential elements Pb and Cd showed higher correlations between tissues and hair/feathers, while few significant patterns were observed for essential elements such as Cu and Zn. Although feathers showed lower levels of correlation with internal tissues than hair, both could be useful as non-destructive biological monitoring tools. Further tissues, and more importantly, hair and feathers allowed discrimination between polluted and reference sites to indicate bioavailability and pollution status. In addition, hair and feathers can be used in monitoring pollution of an active mining site, being specially interesting for biomonitoring a certain period of time in the event of a particular episode of pollution, in addition to the chronic exposure. As occurred with hair in rabbits, feathers seem to be a good compartment to detect differences between a potential polluted area, such the surrounding of an active mine site, and a non-polluted area. | This work was supported by funding from Fundación Migres through a collaboration project with Cobre Las Cruces, S.A. We would like to thank technicians from Fundacion Migres for their help during sampling. | Peer reviewed
Afficher plus [+] Moins [-]Wastewater treatment plant upgrade induces the receiving river retaining bioavailable nitrogen sources Texte intégral
2020
Wang, Qiaojuan | Liang, Jinsong | Zhao, Chen | Bai, Yaohui | Liu, Ruiping | Liu, Huijuan | Qu, Jiuhui
Currently, wastewater treatment plant (WWTP) upgrades have been implemented in various countries to improve the water quality of the receiving ecosystems and protect aquatic species from potential deleterious effects. The impact of WWTP upgrades on biological communities and functions in receiving waters is a fundamental issue that remains largely unaddressed, especially for microbial communities. Here, we selected two wastewater-dominant rivers in Beijing (China) as study sites, i.e., one river receiving water from an upgraded WWTP to explore the impacts of upgrade on aquatic ecosystems and another river receiving water from a previously upgraded WWTP as a reference. After a five-year investigation, we found that WWTP upgrade significantly decreased total organic nitrogen (N) in the receiving river. As a biological response, N-metabolism-related bacterioplankton are accordingly altered in composition and tend to intensively interact according to the network analysis. Metagenomic analysis based on the N-cycling genes and metagenomic-assembled genomes revealed that WWTP upgrade decreased the abundance of nitrifying bacteria but increased that of denitrifying and dissimilatory nitrate reduction to ammonium (DNRA) bacteria in the receiving river, according to their marker gene abundances. After calculation of the ratios between DNRA and denitrifying bacteria and quantification of genes/bacteria related to ammonium cycling, we deduced the changes in N-metabolism-related bacteria are likely an attempt to provide enough bioavailable N for plankton growth as conservation of ammonium was enhanced in receiving river after WWTP upgrade.
Afficher plus [+] Moins [-]Platinum group elements study in automobile catalysts and exhaust gas samples Texte intégral
2020
Omrani, Mehrazin | Goriaux, Mathieu | Liu, Yao | Martinet, Simon | Jean-Soro, Liliane | Ruban, Véronique
Platinum-Group Elements (PGEs, i.e. platinum; Pt, palladium; Pd and rhodium; Rh) are extensively employed in the production of automotive catalytic converters to catalyze and control harmful emissions from exhaust fumes. But catalytic converters wear out over time and the emission of PGEs along with the exhaust fumes are nowadays known to be the main reason of the presence of PGEs in urban environments. PGEs contents were studied on three gasoline 3-way catalytic convertors with low, medium and high kilometers. PGEs emission factors via exhaust gases from Euro 3, 4, 5 and 6 gasoline and diesel vehicles, were monitored using catalytic converters. Results show variable content for PGEs for the three converters, in the ranges of 6–511, 0.5–2507 and 0.1–312 mg kg⁻¹ for Pt, Pd and Rh respectively. PGEs contents in different catalyst supports show the replacement of Pt by Pd in more recent converters. Analysis of the exhaust gas shows that catalytic converters expel up to 36.5 ± 3.8 ng km⁻¹ of Pt, 8.9 ± 1.1 ng km⁻¹ of Pd and 14.1 ± 1.5 ng km⁻¹ of Rh. Higher emissions of PGEs have been observed by gasoline Euro 3 vehicle, possibly due to the older technology of motorization and of the catalytic converter in this vehicle. Euro 3 and 4 diesel vehicles seem to emit more PGEs during urban cycles. Emission of PGEs has been also observed during the cold start of the majority of vehicles which seems to be the result of incomplete combustion during the rise of temperature in the engine. Higher PGEs emissions were also observed during motorway cycles in newer (Euro 4 and 5) petrol and diesel vehicles, conceivably due to the greater combustion as the engine speeds up during this cycle.
Afficher plus [+] Moins [-]Occurrence of carbapenemase-producing Enterobacteriaceae in a Portuguese river: blaNDM, blaKPC and blaGES among the detected genes Texte intégral
2020
Teixeira, Pedro | Tacão, Marta | Pureza, Leide | Gonçalves, Joana | Silva, Artur | Cruz-Schneider, Maria Paula | Henriques, Isabel
Occurrence of carbapenemase-producing Enterobacteriaceae in a Portuguese river: blaNDM, blaKPC and blaGES among the detected genes Texte intégral
2020
Teixeira, Pedro | Tacão, Marta | Pureza, Leide | Gonçalves, Joana | Silva, Artur | Cruz-Schneider, Maria Paula | Henriques, Isabel
Carbapenems are used as last-resort drugs to treat infections caused by multidrug-resistant bacteria. Despite the increasing number of reports of carbapenem-resistant Enterobacteriaceae (CRE), there is still limited information on their distribution or prevalence in the environment. Our aim was to assess the occurrence of CRE in the Lis river (Portugal) and to characterize the genetic platforms linked to carbapenemase genes. We collected six water samples from sites near a wastewater treatment plant (n = 4 samples) and livestock farms (n = 2). Twenty-four CRE were characterized by BOX element-polymerase chain reaction (BOX-PCR), and thirteen representative isolates were analysed by Pulsed-Field Gel Electrophoresis (PFGE) and by sequencing the 16S rRNA gene. Antimicrobial susceptibility testing, PCR screening for carbapenemase-encoding genes, conjugation experiments and plasmid analysis were performed. Four isolates were chosen for whole-genome sequencing. All water samples contained CRE (4.0 CFU/mL on average). Representative isolates were multidrug-resistant (resistant to ciprofloxacin, trimethoprim-sulfamethoxazole and to all β-lactams tested) and were identified as K. pneumoniae, Enterobacter and Citrobacter. Isolates carried plasmids and harboured carbapenemase-encoding genes: blaKPC₋₃ in K. pneumoniae (n = 9), blaNDM₋₁ in Enterobacter (n = 3) and blaGES₋₅ in Citrobacter (n = 1). Conjugation experiments were successful in two Klebsiella isolates. Enterobacter PFGE profiles grouped in one cluster while Klebsiella were divided in three clusters and a singleton. Whole-genome sequencing analysis revealed blaGES₋₅ within a novel class 3 integron (In3-16) located on an IncQ/pQ7-like plasmid in Citrobacter freundii CR16. blaKPC₋₃ was present on IncFIA-FII pBK30683-like plasmids, which were subsequently confirmed in all K. pneumoniae (n = 9). Furthermore, blaKPC₋₃ was part of a genomic island in K. pneumoniae CR12. In E. roggenkampii CR11, blaNDM₋₁ was on an IncA/C₂ plasmid. The carbapenemase-encoding plasmids harboured other resistance determinants and mobile genetic elements. Our results demonstrate that Lis river is contaminated with CRE, highlighting the need for monitoring antibiotic resistance in aquatic environments, especially to last-resort drugs.
Afficher plus [+] Moins [-]Occurrence of carbapenemase-producing Enterobacteriaceae in a Portuguese river: blaNDM, blaKPC and blaGES among the detected genes Texte intégral
2020
Teixeira, Pedro | Tacão, Marta | Pureza, Leide | Gonçalves, Joana | Silva, Artur | Cruz-Schneider, Maria Paula | Henriques, Isabel
Carbapenems are used as last-resort drugs to treat infections caused by multidrug-resistant bacteria. Despite the increasing number of reports of carbapenem-resistant Enterobacteriaceae (CRE), there is still limited information on their distribution or prevalence in the environment. Our aim was to assess the occurrence of CRE in the Lis river (Portugal) and to characterize the genetic platforms linked to carbapenemase genes. We collected six water samples from sites near a wastewater treatment plant (n = 4 samples) and livestock farms (n = 2). Twenty-four CRE were characterized by BOX element-polymerase chain reaction (BOX-PCR), and thirteen representative isolates were analysed by Pulsed-Field Gel Electrophoresis (PFGE) and by sequencing the 16S rRNA gene. Antimicrobial susceptibility testing, PCR screening for carbapenemase-encoding genes, conjugation experiments and plasmid analysis were performed. Four isolates were chosen for whole-genome sequencing. All water samples contained CRE (4.0 CFU/mL on average). Representative isolates were multidrug-resistant (resistant to ciprofloxacin, trimethoprim-sulfamethoxazole and to all β-lactams tested) and were identified as K. pneumoniae, Enterobacter and Citrobacter. Isolates carried plasmids and harboured carbapenemase-encoding genes: blaKPC-3 in K. pneumoniae (n = 9), blaNDM-1 in Enterobacter (n = 3) and blaGES-5 in Citrobacter (n = 1). Conjugation experiments were successful in two Klebsiella isolates. Enterobacter PFGE profiles grouped in one cluster while Klebsiella were divided in three clusters and a singleton. Whole-genome sequencing analysis revealed blaGES-5 within a novel class 3 integron (In3-16) located on an IncQ/pQ7-like plasmid in Citrobacter freundii CR16. blaKPC-3 was present on IncFIA-FII pBK30683-like plasmids, which were subsequently confirmed in all K. pneumoniae (n = 9). Furthermore, blaKPC-3 was part of a genomic island in K. pneumoniae CR12. In E. roggenkampii CR11, blaNDM-1 was on an IncA/C2 plasmid. The carbapenemase-encoding plasmids harboured other resistance determinants and mobile genetic elements. Our results demonstrate that Lis river is contaminated with CRE, highlighting the need for monitoring antibiotic resistance in aquatic environments, especially to last-resort drugs. | published
Afficher plus [+] Moins [-]Estimating inorganic arsenic exposure from rice intake in Chinese Urban Population Texte intégral
2020
Zhou, Zheng | Kang, Yijin | Li, Huanhong | Cao, Suzhen | Xu, Jianhua | Duan, Xiaoli | Yang, Guiling | Shao, Kan
Rice intake is a major route of oral exposure to inorganic arsenic (iAs), a known human carcinogen. The recent risk assessment on iAs in rice conducted by the US Food & Drug Administration (FDA) didn’t propose an action level for iAs in rice mainly because of the relatively low consumption rate in the general US population. However, this decision may not be applicable to high rice-intake populations, such as the Chinese population.The objective of this study was to probabilistically characterize the exposure of iAs via rice intake in Chinese population with a focus on the urban population.With the consideration of bioaccessibility of iAs in rice, iAs exposure is mainly determined by rice intake rate and iAs concentration in rice. To estimate the daily rice consumption, a dietary survey consisting of 1873 subjects was conducted in three major Chinese cities (Beijing, Guangzhou, and Hangzhou). Speciated As concentration in rice was measured using 480 rice samples collected from markets in these three cities. Monte Carlo simulation approach was applied to distributionally estimate the average daily dose (ADD) of iAs through rice intake.The estimated distribution of daily iAs exposure of the study population has a mean of 10.5 μg/day with a 95th percentile interval from 0.1 to 75.3 μg/day. The estimated distribution of ADD has a mean of 0.179 μg/kg/day with a 95th percentile interval from 0.001 to 1.224 μg/kg/day. Greater level of iAs exposure (due to higher rice intake) was observed in males than females, and in summer than other seasons with lower temperature. Geographically, the ADD of iAs exposure from rice intake reduces from south to north.About 13% of the Chinese urban population are exposed to iAs via rice intake higher than the Reference Dose (RfD) level.
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