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Functional metagenomic and enrichment metatranscriptomic analysis of marine microbial activities within a marine oil spill area
2021
Song, Bingkui | Li, Zhihao | Li, Si | Zhang, Zhongzhen | Fu, Qitong | Wang, Shijie | Li, Liang | Qi, Shuting
Microorganisms can degrade petroleum hydrocarbons, providing the advantages of low cost and few side effects towards ecosystems. Here, we evaluated the mechanisms of microbial degradation of marine petroleum hydrocarbon using metagenomics and metatranscriptomics approaches in order to provide new insight into microbial degradation of petroleum hydrocarbon. Seawater samples were collected at a depth of ∼8 m from an area near a drilling platform in the Bohai Bay and metagenomic sequencing was used to evaluate the functional potential of these marine microbial communities. Metatranscriptomic sequencing, fluorescence in-situ hybridization experiments, and flow cytometry were also performed on the microbial communities of samples subjected to 12 different culture conditions. The data were also subjected to Weighted Gene Co-expression Network Analysis (WGCNA) and co-transcription data visualization to evaluate co-transcription of gene functions. Metagenomic sequencing indicated the presence of numerous genes that were related to petroleum hydrocarbon metabolism. Further, the high co-transcription of genes in multiple pathways, indicated that groups of genes were synergistically transcribed to metabolize petroleum hydrocarbons. Metatranscriptomics also showed that microbial metabolism was highly active in the enrichments and that the transcription of a large number of prokaryotic replication and repair genes were significantly up-regulated including those encoding for the type VI secretion system (T6SS) protein, DNA polymerase I, thymidine phosphorylase, mevalonate kinase, and two-component systems. Concomitantly, the transcription of ribosomal genes involved in translation and photosynthetic genes involved in energy metabolism were down-regulated. Overall, oil and oxygen presence can increase the oil-degradation rates and related genes’ transcription. Lot different metabolisms are co-regulated to exploit nutrients derived from the metabolism of petroleum hydrocarbons. Our analysis of metagenomic, metatranscriptomic and degradation data in this study show that a widespread gene spectrum involved in oil-degradation and the cooperation among genes is of great importance.
Afficher plus [+] Moins [-]Environmentally relevant concentration of sulfamethoxazole-induced oxidative stress-cascaded damages in the intestine of grass carp and the therapeutic application of exogenous lycopene
2021
Wang, Yu | Zhao, Hongjing | Liu, Yachen | Li, Jingyan | Nie, Xiaopan | Huang, Puyi | Xing, Mingwei
Due to the unreasonable use and discharge of the aquaculture industry, over standard of the antibiotics has been frequent in different types of water environments, causing adverse effects on aquatic organisms. Lycopene (LYC) is an esculent carotenoid, which is considered to be a strong antioxidant. This study was designed to explore the therapeutic effect of LYC on antibiotic (sulfamethoxazole (SMZ)) induced intestinal injury in grass carp Ctenopharyngodon idella. The 120 carps (the control, LYC, SMZ, and co-administration groups) were treated for 30 days. We found that treatment with LYC significantly suppressed SMZ-induced intestinal epithelial cell damage and tight junction protein destruction through histopathological observation, transmission electron microscopy and detection of related genes (Claudin-1/3/4, Occludin and zonula occludens (ZO)-1/2). Furthermore, LYC mitigated SMZ-induced dysregulation of oxidative stress markers, including elevated malondialdehyde (MDA) levels, and consumed super oxide dimutese (SOD), catalase (CAT) activities and glutathione (GSH) content. In the same treatment, LYC reduced inflammation and apoptosis by a detectable change in pro-inflammatory factors (tumor necrosis factor-alpha (TNF-β), interleukin (IL)-1β, IL-6 and IL-8), anti-inflammatory factors (transforming growth factor-beta (TGF-β) and IL-10) and pro-apoptosis related genes (p53, p53 upregulated modulator of apoptosis (PUMA), Bax/Bcl-2 ratio, caspase-3/9). In addition, activation of autophagy (as indicated by increased autophagy-related genes through AMPK/ATK/MTOR signaling pathway) under the stress of SMZ was also dropped back to the original levels by LYC co-administration. Collectively, our findings identified that LYC can serve as a protectant agent against SMZ-induced intestinal injury.
Afficher plus [+] Moins [-]Antibiotics in wastewater: From its occurrence to the biological removal by environmentally conscious technologies
2021
Langbehn, Rayane Kunert | Michels, Camila | Soares, Hugo Moreira
In this critical review, we explored the most recent advances about the fate of antibiotics on biological wastewater treatment plants (WWTP). Although the occurrence of these pollutants in wastewater and natural streams has been investigated previously, some recent publications still expose the need to improve the detection strategies and the lack of information about their transformation products. The role of the antibiotic properties and the process operating conditions were also analyzed. The pieces of evidence in the literature associate several molecular properties to the antibiotic removal pathway, like hydrophobicity, chemical structure, and electrostatic interactions. Nonetheless, the influence of operating conditions is still unclear, and solid retention time stands out as a key factor. Additionally, the efficiencies and pathways of antibiotic removals on conventional (activated sludge, membrane bioreactor, anaerobic digestion, and nitrogen removal) and emerging bioprocesses (bioelectrochemical systems, fungi, and enzymes) were assessed, and our concern about potential research gaps was raised. The combination of different bioprocess can efficiently mitigate the impacts generated by these pollutants. Thus, to plan and design a process to remove and mineralize antibiotics from wastewater, all aspects must be addressed, the pollutant and process characteristics and how it is the best way to operate it to reduce the impact of antibiotics in the environment.
Afficher plus [+] Moins [-]Comparison of 6:2 chlorinated polyfluorinated ether sulfonate (6:2 Cl-PFESA) and perfluorooctane sulfonate (PFOS) accumulation and toxicity in mung bean
2021
Pan, Ying | Wen, Bei | Zhang, Hongna | Zhang, Shuzhen
With the regulation of perfluorooctanesulfonate (PFOS), 6:2 chlorinated polyfluoroalkyl ether sulfonate (6:2 Cl-PFESA) has been used as a potential PFOS alternative in electroplating. In this study, the uptake, translocation and phytotoxicity of PFOS and 6:2 Cl-PFESA in mung bean (Vigna radiata (Linn.) Wilczek.) were investigated. The uptake kinetics of PFOS and 6:2 Cl-PFESA fit the Michaelis-Menten equation well, suggesting that the uptake is a carrier-mediated process. The root concentration factor (RCF) of 6:2 Cl-PFESA (34.55 mL g⁻¹ dw) was 1.27 times that of PFOS (27.11 mL g⁻¹ dw), and the translocation factor (TF) of 6:2 Cl-PFESA (0.177) was 1.07 times that of PFOS (0.165). Exposure to 6:2 Cl-PFESA and PFOS both resulted in the inhibition of mung bean seedling development. Treatment with 6:2 Cl-PFESA and PFOS led to the concentration-dependent elevation of malondialdehyde (MDA), carbonyl groups, and phosphorylated histone H2AX (γ-H2AX) levels in mung bean roots. The MDA and carbonyl group contents induced by 6:2 Cl-PFESA were 1.10–1.35 and 1.03–1.14 times, respectively, those of PFOS. The hydroxyl free radical (·OH) levels in mung bean roots after exposure to PFOS and 6:2 Cl-PFESA were elevated significantly, and the ·OH levels induced by 6:2 Cl-PFESA were higher than those induced by PFOS. Hydroxyl free radical levels were positively correlated with the MDA and carbonyl group contents in mung bean roots (p < 0.05). The dynamic changes in some antioxidative enzyme activities in mung bean seedlings were determined, including peroxidase (POD), superoxide dismutase (SOD), and catalase (CAT). The results demonstrated the phytotoxicities of 6:2 Cl-PFESA and PFOS to mung bean in the early developmental stage. 6:2 Cl-PFESA is more harmful to mung beans than PFOS. The production of hydroxyl radical is the mechanism that causes the toxicity of PFOS and 6:2 Cl-PFESA toward plants.
Afficher plus [+] Moins [-]Spatial distribution of particulate matter 2.5 released from surface fuel combustion of Pinus koraiensis – A laboratory simulation study
2021
Ning, Jibin | Di, Xueying | Yu, Hongzhou | Yuan, Sibo | Yang, Guang
High concentration particulate matter 2.5 released from forest fires, in addition to direct burns and asphyxia, PM₂.₅ is one of the main pollutants which threaten the safety of forest fire fighter. Therefore, to assess spatial distribution of PM₂.₅, a simulation study was conducted. Fuel beds with different moisture contents and loads were constructed. 144 times burning experiments were carried out under different wind speeds by using wind tunnel device. PM₂.₅ particles at different spatial points were collected and calculated. The results show that, in the two of three variables interaction between wind speed, fuel load, and, except fuel moisture content, wind speed and fuel load are positively correlated with the PM₂.₅ concentrations. From PM₂.₅ concentration which collected at each point in the horizontal and vertical directions, the overall trend is that PM₂.₅ concentration increases along the horizontal downwind direction (C and D higer than A and B) and the vertical upward direction (A and C higer than B and D) Based on BP neural network, the spatial distribution model of PM₂.₅ concentration with single hidden layer was established. The prediction accuracy of modeling samples and validation samples is balanced when hidden layer node is 5. This study will help to make reference for PM₂.₅ occupational exposure standards, forest fire smoke management and forest fire management in China.
Afficher plus [+] Moins [-]Centrality of cattle solid wastes in vermicomposting technology – A cleaner resource recovery and biowaste recycling option for agricultural and environmental sustainability
2021
Yuvaraj, Ananthanarayanan | Thangaraj, Ramasundaram | Ravindran, Balasubramani | Chang, Soon Woong | Karmegam, Natchimuthu
The current review reports the importance and significance of cattle solid waste in vermicomposting technology concerning biowaste pollution in the environment. Needy increasing population evokes livestock production resulting in the massive generation of livestock wastes, especially cattle dung. Improper disposal and handling of biowastes originating from agriculture, industries, forests, rural and urban areas lead to nutrient loss, environmental pollution and health risks. Among the organic waste disposal methods available, vermicomposting is regarded as an environmentally friendly technology for bioconversion of agricultural, industrial, rural and urban generated organic solid wastes which are serving as reservoirs of environmental pollution. In vermicomposting of organic wastes, cattle dung plays a central role in mineralization, nutrient recovery, earthworm and microbial activity leading to vermifertilizer production. Even though the vermicomposting studies use cattle dung invariably as an amendment material, its importance has not been reviewed to highlight its central role. Hence, the present review mainly emphasizes the key role played by cattle dung in vermicomposting. Vermiconversion of cattle dung alone and in combination with other biowaste materials of environmental concern, mechanisms involved and benefits of vermicompost in sustainable agriculture are the major objectives addressed in the present review. The analysis reveals that cattle dung is indispensable amendment material for vermicomposting technology to ensure agricultural and environmental sustainability by reducing pollution risks associated with biowastes on one hand, and nutrient-rich benign vermifertilizer production on the other hand.
Afficher plus [+] Moins [-]Ecological network analysis reveals distinctive microbial modules associated with heavy metal contamination of abandoned mine soils in Korea
2021
Chun, Seong-Jun | Kim, Young-Joong | Cui, Yingshun | Nam, Kyong-Hee
Heavy metal pollution in soil around abandoned mine sites is one of the most critical environmental issues worldwide. Soil microbes form complex communities and perform ecological functions individually or in cooperation with other organisms to adapt to harsh environments. In this study, we investigated the distribution patterns of bacterial and fungal communities in non-contaminated and heavy metal-contaminated soil of the abandoned Samkwang mine in Korea to explore microbial interaction mechanisms and their modular structures. As expected, the bacterial and fungal community structures showed large differences depending on the degree of heavy metal contamination. The microbial network was divided into three modules based on the levels of heavy metal pollution: heavy metal-tolerant (HM-Tol), heavy metal-mid-tolerant (HM-mTol), and heavy metal-sensitive (HM-Sens) modules. Taxonomically, microbes assigned to Vicinamibacterales, Pedosphaeraceae, Nitrosomonadaceae, and Gemmatimonadales were the major groups constituting the HM-Tol module. Among the detected heavy metals (As, Pb, Cd, Cu, and Zn), copper concentrations played a key role in the formation of the HM-Tol module. In addition, filamentous fungi (Fusarium and Mortierella) showed potential interactions with bacteria (Nitrosomonadaceae) that could contribute to module stability in heavy metal-contaminated areas. Overall, heavy metal contamination was accompanied by distinct microbial communities, which could participate in the bioremediation of heavy metals. Analysis of the microbial interactions among bacteria and fungi in the presence of heavy metals could provide fundamental information for developing bioremediation mechanisms for the recovery of heavy metal-contaminated soil.
Afficher plus [+] Moins [-]Estimation of hourly PM1 concentration in China and its application in population exposure analysis
2021
Huang, Li | Mao, Feiyue | Zang, Julin | Zhang, Yunquan | Zhang, Yi | Zhang, Taixin
Particulate pollution is closely related to public health. PM₁ (particles with an aerodynamic size not larger than 1 μm) is much more harmful than particles with larger sizes because it goes deeper into the body and hence arouses social concern. However, the sparse and unevenly distributed ground-based observations limit the understanding of spatio-temporal distributions of PM₁ in China. In this study, hourly PM₁ concentrations in central and eastern China were retrieved based on a random forest model using hourly aerosol optical depth (AOD) from Himawari-8, meteorological and geographic information as inputs. Here the spatiotemporal autocorrelation of PM₁ was also considered in the model. Experimental results indicate that although the performance of the proposed model shows diurnal, seasonal and spatial variations, it is relatively better than others, with a determination coefficient (R²) of 0.83 calculated based on the 10-fold cross validation method. Geographical map implies that PM₁ pollution level in Beijing-Tianjin-Hebei is much higher than in other regions, with the mean value of ∼55 μg/m³. Based on the exposure analysis, we found about 75% of the population lives in an environment with PM₁ higher than 35 μg/m³ in the whole study area. The retrieval dataset in this study is of great significance for further exploring the impact of PM₁ on public health.
Afficher plus [+] Moins [-]Bone-derived biochar improved soil quality and reduced Cd and Zn phytoavailability in a multi-metal contaminated mining soil
2021
Azeem, Muhammad | Ali, Amjad | Arockiam Jeyasundar, Parimala Gnana Soundari | Li, Yiman | Abdelrahman, Hamada | Latif, Abdul | Li, Ronghua | Basta, Nicholas | Li, Gang | Shaheen, Sabry M. | Rinklebe, Jörg | Zhang, Zenqqiang
Reusing by-products such as cow bones in agriculture can be achieved thorough pyrolysis. The potential of bone-derived biochar as a promising material for metals immobilization in contaminated mining soils has not yet been sufficiently explored. Therefore, cow bones were used as biochar feedstock were pyrolyzed at 500 °C (CBL) and 800 °C (CBH) and. The two biochars were applied to a mine contaminated soil at 0 (control), 2.5, 5 and 10%, w/w, dosages; then, the soils were incubated and cultivated by maize in the greenhouse. Cadmium (Cd) and zinc (Zn) bioavailability and their sequentially extracted fractions (acid soluble, reducible, oxidizable, and residual fraction), soil microbial function, and plant health attributes were analyzed after maize harvesting. Bone-derived biochar enhanced the content of dissolved organic carbon (up to 74%), total nitrogen (up to 26%), and total phosphorus (up to 27%) in the soil and improved the plant growth up to 55%, as compared to the control. The addition of CBL altered the acid soluble fraction of both metals to the residual fraction and, thus, reduced the content of Zn (55 and 40%) and Cd (57 and 67%) in the maize roots and shoots, respectively as compared to the control. The CBL enhanced the β-glucosidase (51%) and alkaline phosphatase activities (71%) at the lower doses (2.5–5%) as compared to control, while the activities of these enzymes decreased with the higher application doses. Also, CBL improved the antioxidants activity and maize growth at the 2.5–5% application rate. However, the activity of the dehydrogenase significantly decreased (77%), particularly with CBH. We conclude that CBL, applied at 2.5–5% dose, can be utilized as a potential low cost and environmental friendly amendment for stabilization of toxic metals in contaminated mining soils and producing food/feed/biofuel crops with lower metal content.
Afficher plus [+] Moins [-]Spatial and seasonal variation of microplastics and possible sources in the estuarine system from central west coast of India
2021
Gupta, Priyansha | Saha, Mahua | Rathore, Chayanika | Suneel, V. | Ray, Durbar | Naik, Akshata | K, Unnikrishnan | M, Dhivya | Daga, Krushi
The versatile use of various synthetic polymers, including plastics, generates a large volume of non-degradable waste, which is eventually responsible for forming microplastics (MPs) in aquatic environments. The present study describes the significant spatial and seasonal variation on the abundance of MPs and their physiochemical nature along the Mandovi-Zuari estuarine system of Goa, west coast of India. During the wet season (September), the average abundance of MPs was found relatively higher in water (0.107 particles/m³) and sediment (7314 particles/kg) than those found in the dry season (April) (0.099 particles/m³ in water and 4873 particles/kg in sediment). During the wet season, heavy rain and excessive riverine freshwater influx carry more terrestrial plastic debris in the estuarine system which causes higher averages MPs density in surface water and sediment. <300 μm sized particles and black colored MPs were predominant equally in water and sediment during both seasons. MPs of different shapes like fragments, fibres, films and beads accounted for most collected samples. The Micro-Fourier Transform Infrared Spectroscopy (μ-FTIR) based compositional analysis identified approximately 33 types of polymers, of which polyacrylamide (PAM), polyacetylene, polyamide (PA), polyvinyl pyrrolidone (PVP), polyvinyl chloride (PVC), and polyimide (PI) were abundant. Fragmentation of larger plastic particles due to mismanaged treated and untreated STPs and washing machine effluents are the primary sources of these MPs in the estuarine system. Moreover, these estuaries also receive a variety of domestic, industrial and other wastes from local cities, ports, and fishing jetties. Thus the present study enlightens the current distribution of MPs and their sources in the Mandovi-Zuari estuarine system and thus provides very useful information to the stakeholder and concerned departments for initiating the mitigation measures.
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