Biochemical indicators are potent tools to assess ecosystem functioning under anthropic and global pressures. Nevertheless, additional work is needed to improve the methods used for the measurement of these indicators, and for a more relevant interpretation of the obtained results. To face these challenges, the platform Biochem-Env aims at providing innovative and standardized measurement protocols, as well as database and information system favoring result interpretation and opening. Its skills and tools are also offered for expertise, consulting, training, and standardization. In addition, the platform is a service of a French Research Infrastructure for Analysis and Experimentation on Ecosystems, for research in environmental and agricultural sciences.

International audience | The antifungal activity of seven essential oils (eucalyptus, clove, mint, oregano, savory, tea tree, and thyme) was studied on Venturia inaequalis, the fungus responsible for apple scab. The composition of the essential oils was checked by gas chromatography-mass spectrometry. Each essential oil had its main compound. Liquid tests were performed to calculate the IC50 of essential oils as well as their majority compounds. The tests were made on two strains with different sensitivities to tebuconazole: S755, the sensitive strain, and rs552, the strain with reduced sensitivity. Copper sulfate was selected as the reference mineral fungicidal substance. IC50 with confidence intervals were calculated after three independent experiments. The results showed that all essential oils and all major compounds had in vitro antifungal activities. Moreover, it was highlighted that the effectiveness of four essential oils (clove, eucalyptus, mint, and savory) was higher than copper sulfate on both strains. For each strain, the best activity was obtained using clove and eucalyptus essential oils. For clove, the IC50 obtained on the sensitive strain (5.2 mg/L [4.0–6.7 mg/L]) was statistically lower than the IC50 of reduced sensitivity strain (14 mg/L [11.1–17.5 mg/L]). In contrast, for eucalyptus essential oil, the IC50 were not different with respectively 9.4–13.0 and 12.2–17.9 mg/L for S755 and rs552 strains. For mint, origano, savory, tea tree, and thyme, IC50 were always the best on rs552 strain. The majority compounds were not necessarily more efficient than their corresponding oils; only eugenol (for clove) and carvacrol (for oregano and savory) seemed to be more effective on S755 strain. On the other hand, rs552 strain seemed to be more sensitive to essential oils than S755 strain. In overall, it was shown that essential oils have different antifungal activities but do not have the same antifungal activities depending on the fungus strain used.

[Departement_IRSTEA]Eaux [TR1_IRSTEA]QUASARE [ADD1_IRSTEA]Systèmes aquatiques soumis à des pressions multiples | International audience | We used historical sources from the end of the nineteenth to the mid-twentieth century and current data to retrace fish assemblage trajectories for the past 150 years on 29 river stretches distributed throughout the Seine River basin. We based our analyses on species presence/absence, occurrence of amphidromous and non-native species, and species ecological traits related to habitat preference, oxygen and temperature requirements, and diet. In accordance with general trends observed for Western Europe, we detected a general decline of amphidromous species and an increase in nonnative species, even if, at some sites, several non-native species were extirpated. These changes affecting amphidromous and non-native species led to a weak increase in beta-diversity in fish assemblages. Independently of amphidromous and non-native species, for a reduced set of sites, we noted that changes in the balance of ecological traits over time, trace, in a consistent way, the major steps that affected watercourses like waterway development, increasing pollution, dam construction, or, locally, the recent wastewater treatment improvement. Despite local variations, we found contrasted trends between, on one hand, large rivers and/or catchments which had experienced strong expansion in human population, where fish assemblages had deteriorated, and, on the other hand, upstream catchments, with a declining human population, where fish assemblages showed signs of improvement. Because our results suggested that long-term changes affecting fish assemblages cannot be summarized as an unequivocal gradual degradation, we questioned the use of historical data to define ecological reference conditions for river assessment and management purposes.

International audience | Chlordecone is an organochlorine insecticide that was intensively used in the French West Indies to control the black weevil Cosmopolites sordidus in bananas. Its usage, however, resulted in the widespread pollution of the environment with heavy sanitary and social consequences, leading to population exposure mainly through food. Time-consuming and costly programs have been used to tackle this problem, and this study proposes to use the emerging sewage epidemiology approach to evaluate the current situation and the effect of such programs. The results determine the maximal value of chlordecone consumption, and considering the detection limit of the analytical protocol, the wastewater was found to have undetectable amounts of chlordecone. This value confirms the efficiency of the population protection strategy provided by French sanitary and environmental authorities. It also bolsters the usage of sewage epidemiology in pesticide assessment and relativizes the chlordecone risk compared to other chemicals of lesser concern.

Nitrogen runoff from fertiliser intensive land uses has become an issue worldwide, contributing to algal blooms, hypoxic waters and aquatic biodiversity losses. This study assessed potential nutrient pollution from blueberry farms in subtropical Australia and examines whether nutrient loads were driven by groundwater discharge and/or surface water runoff. Streams downstream of eight blueberry farms were compared to eight nearby control sites without any blueberry activity. In the 90 day sample period, there were three rain events >90 mm day⁻¹ that produced runoff sufficient to create flooding. Overall, the results revealed a clear link between blueberry farming and nitrogen runoff in headwater streams. While NOX (nitrate + nitrite) was the dominant nitrogen species downstream of blueberry farms, dissolved organic nitrogen (DON) was the dominant species in control sites. The concentrations and loads of NOₓ were one order of magnitude lower in the eight non-blueberry (6.3 ± 2.0 μmol L⁻¹; 1.6 ± 1.2 kg N-NOX ha⁻¹ yr⁻¹) than the eight blueberry (56.9 ± 14.2 μmol L⁻¹; 21.8 ± 8.0 kg N-NOX ha⁻¹ yr⁻¹) sites. NOX concentrations and loads were highest following rain events. Radon (²²²Rn, a natural groundwater tracer) observations and low nitrogen concentration in groundwater samples further suggest that surface runoff dominates the delivery of nitrogen to the creeks investigated. NOX concentrations and loads in creeks correlated with blueberry farm density. At >15% of blueberry land use in a catchment, there was a detectable influence in NOX concentrations and loads in the headwater streams. Assuming that our load estimates can be up-scaled to annual nitrogen creek exports, and that local farmers use the recommended amount of fertiliser (121 kg N ha⁻¹ yr⁻¹), between 18 and 25% of the used fertiliser was lost to the creeks. This implies that there are opportunities for decreasing the use of fertilisers in this catchment and managing any nitrogen that escapes to the creeks.

Trace metal risk assessment and environmental quality standard definition require realistic models that quantify metal exposure and accumulation by biota. In the present study we propose a novel trait-based approach to predict whole body concentrations of metals in aquatic invertebrates from concentrations measured in different environmental compartments. Field data from a large riverine floodplain was used to calibrate and test the model. The prediction performance of the trait-based model was unbiased and uncertainty was below the twofold of measured concentrations for the four studied metals (Ni, Cu, Cd, Pb). The relative contribution of feeding, respiration and locomotion patterns as well as metal concentrations in three environmental compartments provided insights into the importance of different uptake pathways. The relation with the sediment (i.e., to what degree taxa live in or directly on the sediment) was shown to be the most important trait to predict metal accumulation. Overall, this study demonstrated the potential use of bioecological traits for the modeling of whole body metal concentrations of entire aquatic invertebrate communities.

Soil organic matter (SOM) is the principal aggregating agent for soil aggregation and also the main adsorbent for organochlorine pesticides (OCPs) such as dichlorodiphenyltrichloroethane (DDT) and hexachlorocyclohexane (HCH), which may thereby affect OCP distribution in soils subjected to different land use types. However, the potential effects of land use on SOM and OCP distribution patterns in soil aggregates are not well understood. In this study, soils from farmlands and barelands in the Danjiangkou Reservoir area were analyzed to determine the influence of land use on OCP distribution and composition in different aggregate fractions (>3, 1–3, 0.25–1, and <0.25 mm). The results showed that the levels of ∑DDTs ranged from 9.01 to 27.48 with a mean of 14.40 ng g⁻¹, and ∑HCHs ranged from 2.06 to 4.66 with a mean of 3.19 ng g⁻¹ in farmland soils. In comparison, bareland soils were less contaminated, with total DDTs and HCHs fell in the range of 0.75–5.01 ng g⁻¹ and not detected (n.d.)-1.40 ng g⁻¹ respectively. In regard to the distribution patterns in soil aggregates, the residual levels of ∑DDTs and ∑HCHs tended to a certain degree to enrich in microaggregates (<0.25 mm) relative to bulk soils. A further analysis revealed that the enrichment of ∑DDTs and ∑HCHs in microaggregates were mainly attributed to the accumulation of p,p'-DDE and β-HCH. Moreover, SOM was found also enriched in microaggregates. The enrichment of SOM was significantly and positively correlated with these of ∑DDTs, ∑HCHs, and the dominant metabolites (i.e., DDE and β-HCH) in both land use types. Such results indicated that the variations in behavior of OCPs could be linked to the processes of soil aggregate turnover. These findings may help to enrich the theory of soil OCPs sequestration and establish targeted strategies to mitigate their health risks in the environment.

Among Southeast Asian countries, Thailand has gradually accustomed to extremely prompt urbanization, motorization, and industrialization. Chonburi and Rayong provinces are two provinces involved in “eastern seaboard” industrial zones, which is an emerging economic region that plays a key role in Thailand's economy. The 2013 Rayong oil spill did not only cause damages to the coastal and maritime environment, but also undermine trust in the overall safety system and negatively affect the investor confidence. In this study, 69 coastal soils collected around Koh Samed Island were chemically extracted and analyzed for 15 PAHs by using a Shimadzu GCMS-QP2010 Ultra system comprising a high-speed performance system with ASSP function. In this study, numerous diagnostic binary ratios were applied to identify potential sources of PAHs. Advanced statistical techniques such as hierarchical cluster analysis coupled with principal component analysis were also conducted for further investigations of source identifications.