Coral reef science has grown exponentially in recent decades in the Gulf. Analysis of literature from 1950 to 2012 identified 270 publications on coral reefs in the Gulf, half of which were published in just the past decade. This paper summarizes the growth and evolution of coral reef science in the Gulf by examining when, where and how research has been conducted on Gulf reefs, who conducted that research, and what themes and taxa have dominated scientific interest. The results demonstrate that there has been significant growth in our understanding of the valuable coral reefs of the Gulf, but also highlight the fact that we are documenting an increasingly degraded ecosystem. Reef scientists must make a concerted effort to improve dialogue with regional reef management and decision-makers if we are to stem the tide of decline in coral reefs in the Gulf.

A fungus, Aureobasidium pullulans, was isolated from marine biofilm and identified. A bioassay-guided fractionation procedure was developed to isolate and purify antifouling compounds from A. pullulans HN. The procedure was: fermentation broth—aeration and addition of sodium thiosulfate–graduated pH and liquid–liquid extraction—SPE purification—GC–MS analysis. Firstly, the fermentation broth was tested for its toxicity. Then it was treated with aeration and addition of sodium thiosulfate, and its toxicity was almost not changed. Lastly, antifouling compounds were extracted at different pH, the extract had high toxicity at pH 2 but almost no toxicity at pH 10, which suggested the toxicants should be fatty acids. The EC50 of the extract against Skeletonema costatum was 90.9μgml−1, and its LC50 against Balanus amphitrete larvae was 22.2μgml−1. After purified by HLB SPE column, the EC50 of the extract against S. costatum was 49.4μgml−1. The myristic and palmitic acids were found as the main toxicants by GC–MS.

Deposition of tar balls along the coast of Goa, India is a common phenomenon during the southwest monsoon. Representative tar ball samples collected from various beaches of Goa and one Bombay High (BH) crude oil sample were subjected to fingerprint analysis based on diagnostic ratios of n-alkane, biomarkers of pentacyclic tri-terpanes and compound specific stable carbon isotope (δ13C) analysis to confirm the source. The results were compared with the published data of Middle East Crude Oil (MECO) and South East Asian Crude Oil (SEACO). The results revealed that the tar balls were from tanker-wash derived spills. The study also confirmed that the source is not the BH, but SEACO. The present study suggests that the biomarkers of alkanes and hopanes coupled with stable carbon isotope analysis act as a powerful tool for tracing the source of tar balls, particularly when the source specific biomarkers fail to distinguish the source.

In order to understand changes in the functioning and the community structure of intertidal ecosystem in sewage-impacted sites, a long-term monitoring coverage study (2004–2011) was carried out on abrasion platforms of the SW Atlantic. The intertidal zone is characterized by the mytilid Brachidontes rodriguezii, an ecosystem engineer. Since the austral spring of 2008, a demographic explosion of an invader polychaetes, Boccardia proboscidea, has produced massive biogenic structures around the sewage discharge outfall. Cover percentage of this polychaete reached almost 100% in sewage-impacted sites but low or no coverage at all in Reference Sites. The density of B. rodriguezii declined due to the biogenic reefs stifles these mytilids. The massive settlement of B. proboscidea among mussels, the rapid growth and the tube construction smothers the mussels in sewage-impacted sites.

The Atlantic bluefin tuna Thunnus thynnus (ABFT) is intensely fished in the Mediterranean Sea to supply a prosperous capture-based mariculture industry. Liver apoptotic structures and tumor necrosis factor (TNF) gene expression were determined in: wild ABFT caught in the eastern Atlantic; juvenile ABFT reared in the central Adriatic Sea; juvenile ABFT reared in the northern Adriatic Sea; adult ABFT reared in the western Mediterranean. The highest density of liver apoptotic structures was found in the juveniles from the northern Adriatic. Two partial TNF cDNAs (TNF1 and TNF2) were cloned and sequenced. TNF1 gene expression was higher in juveniles than in adults. The highest expression of TNF2 was found in the juveniles from the northern Adriatic. These findings might be related to the juvenile exposure to environmental pollutants.

Corals in the Gulf 1Although virtually all standard maps use the term “Persian Gulf”, the term “Arabian Gulf” has become commonly used in publications of studies conducted in the waters of Arabian Peninsula countries. The nonpolitical generic term “Gulf” is therefore used here for this marine area.1 withstand summer temperatures up to 10°C higher than corals elsewhere and have recovered from extreme temperature events in 10years or less. This heat-tolerance of Gulf corals has positive implications for the world’s coral populations to adapt to increasing water temperatures. However, survival of Gulf corals has been severely tested by 35–37°C temperatures five times in the last 15years, each time causing extensive coral bleaching and mortality. Anticipated future temperature increases may therefore challenge survival of already highly stressed Gulf corals. Previously proposed translocation of Gulf corals to introduce temperature-adapted corals outside of the Gulf is assessed and determined to be problematical, and to be considered a tool of last resort. Coral culture and transplantation within the Gulf is feasible for helping maintain coral species populations and preserving genomes and adaptive capacities of Gulf corals that are endangered by future thermal stress events.

Historically coral reefs of Bahrain were among the most extensive in the southern basin of the Arabian Gulf. However, Bahrain’s reefs have undergone significant decline in the last four decades as a result of large-scale coastal development and elevated sea surface temperature events. Here we quantitatively surveyed six sites including most major coral reef habitats around Bahrain and a reef located 72km offshore. Fleshy and turf algae now dominate Bahrain’s reefs (mean: 72% cover), and live coral cover is low (mean: 5.1%). Formerly dominant Acropora were not observed at any site. The offshore Bulthama reef had the highest coral cover (16.3%) and species richness (22 of the 23 species observed, 13 of which were exclusive to this site). All reefs for which recent and historical data are available show continued degradation, and it is unlikely that they will recover under continuing coastal development and projected climate change impacts.

We investigated the effects of the burrowing cirratulid polychaete Cirriformia filigera (Delle Chiaje, 1828) on benthic respiration and nitrogen regeneration in metal-contaminated estuarine sediments using laboratory mesocosms. C. filigera is a dominant component of assemblages in the most severely contaminated sediments within the Derwent estuary, southern Australia. In the presence of C. filigera sediment O2 consumption doubled, with approximately 55% of this increase due to their respiration and the remaining 45% attributable to oxidation reactions and increased microbial respiration associated with burrow walls. Combined NO3 and NO2 fluxes were unaffected. The addition of labile organic matter did not affect benthic fluxes, in the presence or absence of C. filigera, presumably due to the short timeframe of the experiment and naturally enriched test sediments. The results suggest that a combination of tolerance and burrowing activity enables this species to provide an ecosystem service in the removal of N from contaminated sites.

Birds are often the most numerous vertebrates damaged and rehabilitated in marine oil spills; however, the efficacy of avian rehabilitation is frequently debated and rarely examined experimentally. We compared survival of three radio-marked treatment groups, oiled, rehabilitated (ORHB), un-oiled, rehabilitated (RHB), and un-oiled, non-rehabilitated (CON), in an experimental approach to examine post-release survival of surf scoters (Melanitta perspicillata) following the 2007 M/V Cosco Busan spill in San Francisco Bay. Live encounter-dead recovery modeling indicated that survival differed among treatment groups and over time since release. The survival estimate (±SE) for ORHB was 0.143±0.107 compared to CON (0.498±0.168) and RHB groups (0.772±0.229), suggesting scoters tolerated the rehabilitation process itself well, but oiling resulted in markedly lower survival. Future efforts to understand the physiological effects of oil type and severity on scoters are needed to improve post-release survival of this species.

The first phase of the Taparura Project aimed at restoring the north coast of Sfax (Tunisia), highly polluted by phosphate industry and uncontrolled phosphogypsum dumping. Before restoration of the north coast of Sfax, we investigated the state of the ecosystem in related coastal waters. To establish the impact of the Taparura Project, we conducted a similar study both after restoration. To discriminate natural changes over time, we extended the study to the south coast of Sfax, submitted to the same industrial pressure but not yet restored. The present study, conducted in May 2010 at 36 stations (18 on each coast, north and south), covered the spatial distribution of the microbial assemblage, nutrients, and abiotic parameters by collecting seawater samples at the surface and the water–sediment interface. Results revealed a striking difference between the two coasts regarding pH, with strong acidification of seawater in the south, likely generated by industrial activity. Suspended matter was higher in the north than in the south. Flow cytometry analysis of ultraphytoplankton (<10μm) resolved six groups (Prochlorococcus, Synechococcus, nanoeukaryotes and three distinct subgroups within picoeukaryotes). In addition to these autotrophic groups, two unknown groups were characterised on the south coast. Heterotrophic prokaryotes were resolved into three groups, labelled LNA (low nucleic acid content), HNA1 and HNA2 (high nucleic acid content). Prochloroccocus, pico-nano-microphytoplankton, heterotrophic prokaryotes and ciliates were more abundant in the north, whereas Synechococcus and unknown species were more abundant in the south where chl a concentration was also higher. The results show that restoration had positive effects on the microbial assemblage of the north coast; they also highlight the strong acidification still prevalent in the south that may be responsible for the lower development of most phytoplankton groups and the occurrence of unknown species. The case for restoration of the city’s south coast is also reinforced.