Considering that pesticides have been used in Europe for over 70 years, a system for monitoring pesticide residues in EU soils and their effects on soil health is long overdue. In an attempt to address this problem, we tested 340 EU agricultural topsoil samples for multiple pesticide residues. These samples originated from 4 representative EU case study sites (CSS), which covered 3 countries and four of the main EU crops: vegetable and orange production in Spain (S–V and S–O, respectively), grape production in Portugal (P-G), and potato production in the Netherlands (N–P). Soil samples were collected between 2015 and 2018 after harvest or before the start of the growing season, depending on the CSS. Conventional and organic farming results were compared in S–V, S–O and N–P. Soils from conventional farms presented mostly mixtures of pesticide residues, with a maximum of 16 residues/sample. Soils from organic farms had significantly fewer residues, with a maximum of 5 residues/sample. The residues with the highest frequency of detection and the highest content in soil were herbicides: glyphosate and its main metabolite AMPA (P-G, N–P, S–O), and pendimethalin (S–V). Total residue content in soil reached values of 0.8 mg kg⁻¹ for S–V, 2 mg kg⁻¹ for S–O and N–P, and 12 mg kg⁻¹ for P-G. Organic soils presented 70–90% lower residue concentrations than the corresponding conventional soils. There is a severe knowledge gap concerning the effects of the accumulated and complex mixtures of pesticide residues found in soil on soil biota and soil health. Safety benchmarks should be defined and introduced into (soil) legislation as soon as possible. Furthermore, the process of transitioning to organic farming should take into consideration the residue mixtures at the conversion time and their residence time in soil.

Marine plastic pollution is a global issue, from the shores to the open ocean. Understanding the pathway and fate of plastic debris is fundamental to manage and reduce plastic pollution. Here, the fate of floating plastic pollution discharged along the coasts is studied by comparing two sources, one based on river discharges and the other on mismanaged waste from coastal populations, using a Lagrangian numerical analysis in a global ocean circulation model. About 1/3 of the particles end up in the open ocean and 2/3 on beaches. The input scenario largely influences the accumulation of particles toward the main subtropical convergence zones, with the South Pacific and North Atlantic being mostly fed by the coastal population inputs. The input scenario influences the number of beached particles that end up in several coastal areas. Beaching occurs mainly locally, although a significant number of particles travel long distances, allowing for global connectivity.

A biogeochemical model (ECO3M-Atoll) was configured to simulate the lower food web in Ahe Atoll lagoon where phytoplankton is mostly nitrogen limited. Understanding the dynamics of phytoplankton – the main food source for oysters – is crucial for the management and the allocation of new pearl farming sites. After parametrizing the model with in situ observations, we tested different hypotheses about nitrogen cycling (benthic remineralization, atmospheric N fixation, etc.) and compared the results to a large observational dataset. Model results show that simulated (pico- and nano-) phytoplankton biomass and nitrogen concentrations are close to in situ data. The simulated biogeochemical processes (uptake and primary production) are also very similar to the observed values. In the model, primary production ranged from 1.00 to 2.00 mg C m−3 h−1 for pico- and 0.40 to 1.00 mg C m−3 h−1 for nanophytoplankton; mean N uptake was 2.02 μmol N m−3 h−1 for pico- and 1.25 μmol N m−3 h−1 for nanophytoplankton.

Systematic Conservation Planning (SCP) offers concepts and toolboxes to make spatial decisions on where to focus conservation actions while minimizing a variety of costs to stakeholders. Thirty-four studies of Pacific Ocean Tropical Islands were scrutinized to categorize past and current types of applications. It appeared that scenarios were often built on a biodiversity representation objective, opportunity costs for fishers was the most frequent cost factor, and an evolution from simple to sophisticated scenarios followed the need to maximize resilience and connectivity while mitigating climate change impacts. However, proxies and models were often not validated, pointing to data quality issues. Customary management by local communities motivated applications specific to the Pacific region, but several island features remained ignored, including invertebrate fishing, ciguatera poisoning and mariculture. Fourteen recommendations are provided to enhance scenarios' robustness, island specificities integration, complex modelling accuracy, and better use of SCP for island management. Previous article

Mercury (Hg) is a contaminant of global concern in marine ecosystems, notably due to its ability to accumulate and concentrate in food webs. Concentrations of total mercury (THg), methylmercury (MeHg) and inorganic mercury (IHg) were assessed and compared in different tissues (liver, muscle, and gonads) of three common fish species (hake Merluccius merluccius, red mullet Mullus surmuletus, and sole Solea solea) from the continental shelf from the southern part of the Bay of Biscay. Several studies investigated Hg concentration in fish muscle, but few assessed concentrations in other organs, despite the importance of such data to understand contaminant organotropism and metabolization. Results showed that trophic position and feeding habitat are required to understand the variability of Hg concentration in muscle between fish species. In addition, high MeHg/THg ratio in muscle could be explained by the predatory behavior of the studied fish species and the biomagnification of this Hg species within the food web, MeHg. Despite differences between species, Hg concentration was always higher in muscle (from 118 ± 64 to 338 ± 101 ng g−1 w.w.) and liver (from 122 ± 108 to 271 ± 95 ng g−1 w.w.). These results can be related to physiological processes especially the MeHg detoxification strategies.

Connectivity affects species demography, (meta)population dynamics, evolution, phylogeny and biogeography. Various methodological approaches are applied to measure connectivity. Biophysical modelling can explore systematically the influence of atmospheric, oceanic and ecological forcing, while genetics measures connectivity patterns within the sampling strategy limit. In the Pacific Ocean pearl farming lagoons, the activity relies on spat collecting of the black lipped pearl oyster Pinctada margaritifera occurring after the larval dispersal phase, which follows spawning from wild or farmed populations. Biophysical 3D modelling and genomic studies have both separately brought insights on within-lagoon connectivity and on the origin of spats. Here, we combined previous genetics results with new realistic biophysical modelling scenarios to elucidate connectivity in Ahe Atoll lagoon. When combined, we identified the weather sequence likely explaining the realized connectivity observations. We discuss the strengths, weaknesses, opportunities and threats of combining these two approaches considering specific pearl farming demographic connectivity questions.

Mass-mortality events of marine species can disturb the structure of communities. While identifying the causes of mass-mortality events is crucial for implementing recovery strategies, monitoring is challenging in remote locations. Black-lip pearl oysters (Pinctada margaritifera) are farmed for producing black pearls within remote atolls of French Polynesia. Previous mass-mortality events have resulted in the collapse of oysters and other species; however, the causes and conditions that favour recovery are unclear. We investigated the potential for oyster population recovery 5 years after a mortality event at Takaroa Atoll (Tuamotu Archipelago). Temperature, food availability (total chlorophyll-a), growth and reproduction were monitored. Growth was also simulated using a Dynamic Energy Budget model. Despite favourable conditions, reduced growth and reproduction signalled an energetic deficit. The model overpredicted growth, and supported the hypotheses that individuals are unable to profit from the phytoplankton available and maintenance costs are high in Takaroa, ultimately explaining their poor physiological condition

The role of ecophysiology in mediating marine biological pollution is poorly known. Here we explore how physiological plasticity to environmental stress can explain and predict the context-dependencies of invasive species impacts. We use the case of two sympatric skeleton shrimps, the invader Caprella scaura and its congener C. equilibra, which is currently replaced by the former on the South European coast. We compare their physiological responses to hyposalinity stress under suboptimal low and high temperature, while inferring on hypoxia tolerance. We use an energy-redox approach, analyzing mortality rate, the energetic balance and the consequent effects on the oxidative homeostasis. We found that decreased seawater salinity and/or oxygen levels can weaken biotic resistance, especially in females of C. equilibra, leading to periods of heightened vulnerability to invasion. Our approach provides mechanistic insights towards understanding the factors promoting invader impacts, highlighting the potential of ecophysiology for improving invasive species management.

Coral reefs are declining at an unprecedented rate as a consequence of local and global stressors. Using a 26-year monitoring database, we analyzed the loss and recovery dynamics of coral communities across seven islands and three archipelagos in French Polynesia. Reefs in the Society Islands recovered relatively quickly after disturbances, which was driven by the recovery of corals in the genus Pocillopora (84% of the total recovery). In contrast, reefs in the Tuamotu and Austral archipelagos recovered poorly or not at all. Across archipelagos, predation by crown-of-thorns starfish and destruction by cyclones outweighed the effects of heat stress events on coral mortality. Despite the apparently limited effect of temperature-mediated stressors, the homogenization of coral communities towards dominance of Pocillopora in the Society Archipelago and the failure to fully recover from disturbances in the other two archipelagos concern the resilience of Polynesian coral communities in the face of intensifying climate-driven stressors.

A traditional taxonomic approach coupled to a biological traits analysis was conducted in order to provide a new insight into macrobenthic communities associated with subtidal sandy environments. Results suggest that the macro-scale distribution of benthic communities is mainly driven by the migration rate of bedforms (sandbank, barchan dune and transversal dune) which changes the sediment grain size and reduces macrobenthic diversity. A classic scheme of species/traits succession was also observed from less to more physically disturbed areas. Finally, the high frequency of migration events homogenized macrobenthic communities between the troughs to the crest of bedforms. As bedforms areas are targeted for the commissioning of offshore windfarms the information provided by the present paper will be particularly useful to implement the environmental impact assessment required for such activities at sea.