Connectivity analysis of metabolites in synthetic metabolic pathways
2013
Meitalovs, J., Latvia Univ. of Agriculture, Jelgava (Latvia) | Stalidzans, E., Latvia Univ. of Agriculture, Jelgava (Latvia)
The size and number of available genome scale metabolic models and reconstructions is growing rapidly. Various computational methods and tools are developed in the last decades for metabolic network construction, analysis and optimization. A software tool SpaceAnalyzer (SAnalyzer) is developed in Matlab environment for automatic generation of biochemical pathways to new metabolites. The computational experiments were performed to build automatically the connectivity tree for 2,3-Butanediol, n-Butanol, caprolactam, lactose, penicillin and cellulose as substrates. The software tool is freely available online at: http://www.biosystems.lv/sanalyzer.
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