Mapping of EST-derived CAPS markers in Italian ryegrass (Lolium multiflorum Lam.)

Miura, Y.; Hirata, M.; Fujimori, M.

Mapping of EST-derived CAPS markers in Italian ryegrass (Lolium multiflorum Lam.)

2007

Miura, Y. | Hirata, M. | Fujimori, M.

New molecular markers derived from expressed sequence tag (EST) sequences were mapped on linkage maps of Italian ryegrass by a two-way pseudo-testcross strategy. cDNA sequences were obtained from various tissues of Italian ryegrass (Lolium multiflorum) and converted into cleaved amplified polymorphic sequence (CAPS) markers. Of 260 EST primer pairs that amplified a single band, 74 generated bands that showed clear polymorphisms among individuals of an F₁ mapping family. Of the 74 polymorphic marker loci, 69 were mapped on an Italian ryegrass linkage map previously constructed using amplified fragment length polymorphism (AFLP), restriction fragment length polymorphism (RFLP), and simple sequence repeat (SSR) markers. The newly-developed EST-CAPS markers would be useful as an efficient tool to identify genetic markers and to identify candidate genes for quantitative trait loci (QTLs) associated with important traits in Italian ryegrass.

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