SimCT: a generic tool to visualize ontology-based relationships for biological objects.
2009
Herrmann, Carl | Bérard, Sèverine | Tichit, Laurent | Technologies avancées pour le génôme et la clinique (TAGC) ; Aix Marseille Université (AMU)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS) | Botanique et Modélisation de l'Architecture des Plantes et des Végétations (UMR AMAP) ; Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-Institut National de la Recherche Agronomique (INRA)-Université de Montpellier (UM)-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD [Occitanie]) | Université de la Méditerranée - Aix-Marseille 2
A-09-52
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Показать больше [+] Меньше [-]Английский. We present a web-based service, SimCT, which allows to graphically display the relationships between biological objects (e.g. genes or proteins) based on their annotations to a biomedical ontology. The result is presented as a tree of these objects, which can be viewed and explored through a specific java applet designed to highlight relevant features. Unlike the numerous tools that search for overrepresented terms, SimCT draws a simplified representation of biological terms present in the set of objects, and can be applied to any ontology for which annotation data is available. Being web-based, it does not require prior installation, and provides an intuitive, easy-to-use service. AVAILABILITY: http://tagc.univ-mrs.fr/SimCT. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.
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Библиографическая информация
Эту запись предоставил Institut national de la recherche agronomique