Unraveling Genomic and Pathogenic Features of <i>Aeromonas ichthyocola</i> sp. nov., <i>Aeromonas mytilicola</i> sp. nov., and <i>Aeromonas mytilicola</i> subsp. <i>aquatica</i> subsp. nov.

The Gram-negative genus <i>Aeromonas</i> contains diverse bacterial species that are prevalent in aquatic environments. This present study describes three novel <i>Aeromonas</i> strains: <i>A. ichthyocola</i> sp. nov. A-5^T and <i>A. mytilicola</i> subsp. <i>aquatica</i> subsp. nov. A-8^T isolated from rainbow trout (<i>Oncorhynchus mykiss</i>), and <i>A. mytilicola</i> sp. nov. A-7^T isolated from mussels (<i>Mytilus galloprovincialis</i>), respectively. Genomic analyses revealed that strains A-5^T and A-7^T shared the highest <i>16S rRNA</i> gene sequence similarity with <i>A. rivipollensis</i> P2G1^T (99.7% and 99.8%, respectively), while strain A-8^T exhibited 99.7% identity with <i>A. media</i> RM^T. Together with morphological, physiological, and biochemical data, genome-based analyses provided additional evidence for species differentiation. Digital DNA–DNA hybridization (dDDH; 56.8−65.9%) and average nucleotide identity (ANI; 94.2–95.7%) values fell below the species delineation thresholds, confirming that these isolates represent distinct taxa. Pathogenicity assays using greater wax moth (<i>Galleria mellonella</i>) larvae demonstrated strain-specific virulence profiles. Further genomic analyses identified biosynthetic gene clusters for nonribosomal peptides (NRPs) and ribosomally synthesized and post-translationally modified peptides (RiPPs), which often have roles in secondary metabolite production. Ecological analyses, based on genomic comparisons and metagenomic database searches, revealed the adaptability of the strains to diverse habitats, including freshwater, wastewater, and activated sludge. Based on the genetic and phenotypic data, the novel taxa <i>Aeromonas ichthyocola</i> sp. nov. A-5ᵀ (LMG 33534ᵀ = DSM 117488ᵀ), <i>Aeromonas mytilicola</i> sp. nov. A-7ᵀ (LMG 33536ᵀ = DSM 117490ᵀ), and <i>Aeromonas mytilicola</i> subsp. <i>aquatica</i> subsp. nov. A-8ᵀ (LMG 33537ᵀ = DSM 117493ᵀ) are proposed.