The scarcity of the most widely used species for assessing marine pollution (mussels) in some areas brings out the need to test the use of a different organism. In this study, 11 sampling sites along the Atlantic Spanish coast were selected and both mussels (Mytilus galloprovincialis) and limpets (Patella sp.) were analysed for PAHs, PBDEs and PCBs. The concentrations of the different pollutants in both species followed the same general distribution allowing us to differentiate polluted and unpolluted sites using any of them. Although the concentrations found in limpets were generally lower than those measured in mussels, a good correlation was observed for most of the groups of pollutants and also for every individual congener. A conversion factor was proposed for most of the individual PAH and PCB congeners, allowing the conversion of limpet concentration into mussel concentration that can be directly applied in assessments using environmental criteria derived for mussels.

Fourteen polybrominated diphenyl ether (PBDE) congeners were measured in water, suspended particulate matter (SPM), and sediment samples collected from the entire expanse of the Yellow River in dry and wet seasons. Higher concentrations of PBDEs were found in the middle and lower reaches of the river compared with those in the upper reaches, ascribed to the relatively developed and urbanized cities located in the areas near the middle and lower reaches. The PBDE concentrations in the samples collected during the dry season were lower than those in the samples collected during the wet season because of thaw and rainfall. The dominant congener, with a contribution of 44.6–90.3%, was BDE-209, which originated from the residual of commercial deca-BDE. Three groups of congeners in all the samples showed good correlations with the coefficient ranging from 0.662 to 0.999 (p < 0.01), indicating common sources and similar environmental behaviors. Regression analysis suggested that the local industrial product (IP) and population density (PD) were good indicators of PBDEs in the water and sediment of the Yellow River.

Oil biodegradation as a weathering process has been extensively investigated over the years, especially after the Deepwater Horizon blowout. In this study, we performed microcosm experiments at 5 °C with chemically dispersed oil in non-amended seawater. We link biodegradation processes with microbial community and metagenome dynamics and explain the succession based on substrate specialization. Reconstructed genomes and 16S rRNA gene analysis revealed that Bermanella and Zhongshania were the main contributors to initial n-alkane breakdown, while subsequent abundances of Colwellia and microorganisms closely related to Porticoccaceae were involved in secondary n‑alkane breakdown and beta‑oxidation. Cycloclasticus, Porticoccaceae and Spongiiabcteraceae were associated with degradation of mono- and poly-cyclic aromatics. Successional pattern of genes coding for hydrocarbon degrading enzymes at metagenome level, and reconstructed genomic content, revealed a high differentiation of bacteria involved in hydrocarbon biodegradation. A cooperation among oil degrading microorganisms is thus needed for the complete substrate transformation.

Abundance and spatial distribution of benthic foraminifera were used to evaluate the impacts of anthropogenic activities on sediment quality in a coastal lagoon in the Gulf of California. In 1985 and 2013, 27 samples of superficial sediments were collected. The foraminifera genera Ammonia, Cribroelphidium, Quinqueloculina and Peneroplis were dominant in both years. The abundance of Ammonia increased from 41% to 60%, while Peneroplis abundance decreased from a maximum of 50% in 1985 to 7% in 2013. The greater abundance of Ammonia and the greater spatial coverage of Ammonia and Cribroelphidium suggest a marked environmental deterioration in the quality of the sedimentary environment, which contrasts with studies of trace elements in the sediment of this lagoon. The Foram Stress Index indicates that sediment quality has deteriorated over time, likely due to the effects of anthropogenic activities around the lagoon.

Entanglement of marine fauna is one of the principal impacts of marine litter, with an incidence that can vary strongly according to regions, the type and the quantity of marine litter. On the seafloor, areas dominated by sessile suspension feeders, such as tropical coral reefs or deep-sea coral and sponge aggregations, have been termed “animal forests” and have a strong potential to monitor the temporal and spatial trends of entanglement by marine litter, especially fishing gears. Several characteristics of these organisms represent advantages while avoiding constraints and bias. Biological constraints and logistical aspects, including tools, are discussed to better define a strategy for supporting long-term evaluation of accumulation and entanglement of marine litter.

High abundances of juvenile fish in certain ports suggest they might provide alternative nursery habitats for several species. To further investigate this possibility, post-settlement growth, metal uptake and body condition were estimated in 127 juveniles of two seabream species, collected in 2014–15, inside and outside the highly polluted ports of the Bay of Toulon. This showed that differences in local pollution levels (here in Hg, Cu, Pb and Zn) are not consistently mirrored within fish flesh. Muscle metal concentrations, below sanitary thresholds for both species, were higher in ports for Cu, Pb and V only. Otherwise, fish muscle composition principally differed by species or by year. Juvenile growth and condition were equivalent at all sites. Higher prey abundance in certain ports might therefore compensate the deleterious effects of pollution, resulting in similar sizes and body conditions for departing juvenile fish than in nearby natural habitats.

In-situ burning (ISB) is a remediation strategy that is used for managing oil spills. ISB generates heavy residues that can submerge and negatively impact benthic environments. To track the fate of toxic contaminants in ISB residues, a conservative hopane biomarker, such as C₃₀-αβ hopane, is often used. Furthermore, diagnostic ratios of various hopanes are used for source oil identification. Use of these biomarkers assume that during ISB the quantity of C₃₀-αβ hopane will be conserved, and the diagnostic ratios of various hopanes will be stable. The objective of this study is to test the validity of these two assumptions. We conducted laboratory-scale ISB experiments using a model oil prepared from commercial C₃₀-αβ hopane standard, and a reference crude oil. Laboratory data collected under controlled burning conditions show that C₃₀-αβ hopane will not be conserved; however, the diagnostic ratios of hopanes will still remain fairly stable.

Microbial communities of coastal marine sediment play a key role in degradation of petroleum contaminants. Here the bacterial and archaeal communities of sub-surface sediments (5–10 cm) of the chronically polluted Priolo Bay (eastern coast of Sicily, Italy), contaminated mainly by n-alkanes and biodegraded/weathered oils, were characterized by cultural and molecular approaches. 16S-PCR-DGGE analysis at six stations, revealed that bacterial communities are highly divergent and display lower phylogenetic diversity than the surface sediment; sub-surface communities respond to oil supplementation in microcosms with a significant reduction in biodiversity and a shift in composition; they retain high biodegradation capacities and host hydrocarbon (HC) degraders that were isolated and identified. HC-degrading Alfa, Gamma and Epsilon proteobacteria together with Clostridia and Archaea are a common feature of sub-surface communities. These assemblages show similarities with that of subsurface petroleum reservoirs also characterized by the presence of biodegraded and weathered oils where anaerobic or microaerophilic syntrophic HC metabolism has been proposed.

Phytoplankton alter their macromolecule composition in response to changing environmental conditions. Often these changes are consistent and can be used as indicators to predict their exposure to a given condition. FTIR-spectroscopy is a powerful tool that provides rapid snapshot of microbial samples. We used FTIR to develop signature macromolecular composition profiles of three cultures: Skeletonema costatum, Emiliania huxleyi, and Navicula sp., exposed to chemically enhanced water accommodated oil fraction (CEWAF) in artificial seawater and control. Using a multivariate model created with a Partial Least Square Discriminant Analysis of the FTIR-spectra, classification of CEWAF exposed versus control samples was possible. This model was validated using aggregate samples from a mesocosm study. Analysis of spectra and PCA-loadings plot showed changes to carbohydrates and proteins in response to CEWAF. Overall we developed a robust multivariate model that can be used to identify if a phytoplankton sample has been exposed to oil with dispersant.

The effects of dissolved oxygen and nutrient loading on the concentrations and species of phosphorus at the sediment–water interface were evaluated under laboratory conditions. The results showed that the redox potential was significantly correlated with the total phosphorus, total dissolved phosphorus, total nitrogen, ammonium and nitrate nitrogen levels in an aerobic setting, but no significant correlations were observed under anaerobic conditions. The dynamic equilibrium between the overlying water and sediment tended to balance out over time, and the concentration gradient reduced, when the nutrient loading was changed. The greatest variation was observed in the level of iron/aluminum-bound phosphorus, while the calcium-bound phosphorus and organic phosphorus contents showed relatively minor changes. This study not only illustrates the phosphorus transfer mechanism between sediment and water, but can also contribute to the management and protection of Bohai Bay.