The prevalence of antibiotic resistant bacteria (ARB) and antibiotic resistance genes (ARGs) in the microbiome is a major public health concern globally. Many habitats in the environment are under threat due to excessive use of antibiotics and evolutionary changes occurring in the resistome. ARB and ARGs from farms, cities and hospitals, wastewater treatment plants (WWTPs) or as water runoffs, may accumulate in water, soil, and air. We present a global picture of the resistome by examining ARG-related papers retrieved from PubMed and published in the last 30 years (1990–2020). Natural Language Processing (NLP) was used to retrieve 496,640 papers, out of which 9374 passed the filtering test and were further analyzed to determine the distribution and diversity of ARG subtypes. The papers revealed seven major antibiotic families together with their respective ARG subtypes in different habitats on six continents. Asia, especially China, had the highest number of ARGs related papers compared to other countries/regions/continents. ARGs belonging to multidrug, glycopeptide, and β-lactam families were the most common in reports from hospitals and sulfonamide and tetracycline families were common in reports from farms, WWTPs, water and soil. We also highlight the ‘omics’ tools used in resistome research, describe some factors that shape the development of resistome, and suggest future work needed to better understand the resistome. The goal was to show the global nature of ARB and ARGs in order to encourage collaborate research efforts aimed at reducing the negative impacts of antibiotic resistance on the One Health concept.

River ecosystems are under increasing stress in the background of global change and ever-growing anthropogenic impacts in Central Asia. However, available water quality data in this region are insufficient for a reliable assessment of the current status, which come as no surprise that the limited knowledge of regulating processes for further prediction of solute variations hinders the development of sustainable management strategies. Here, we analyzed a dataset of various water quality variables from two sampling campaigns in 2019 in the catchments of two major rivers in Central Asia—the Amu Darya and Syr Darya Rivers. Our results suggested high spatial heterogeneity of salinity and major ion components along the longitudinal directions in both river catchments, pointing to an increasing influence of human activities toward downstream areas. We linked the modeling outputs from the global nutrient model (IMAGE-GNM) to riverine nutrients to elucidate the effect of different natural and anthropogenic sources in dictating the longitudinal variations of the riverine nutrient concentrations (N and P). Diffuse nutrient loadings dominated the export flux into the rivers, whereas leaching and surface runoff constituted the major fractions for N and P, respectively. Discharge of agricultural irrigation water into the rivers was the major cause of the increases in nutrients and salinity. Given that the conditions in Central Asia are highly susceptible to climate change, our findings call for more efforts to establish holistic management of water quality.

Plastic mulching and straw incorporation are common agricultural practices in China. Plastic mulching is suspected to be a significant source of microplastics in terrestrial environments. Straw incorporation has many effects on the storage of soil organic carbon (SOC) and greenhouse gas emissions, but these effects have not been studied in the presence of microplastic pollution. In this study, 365-day soil incubation experiments were conducted to assess the effects of maize straw and polyethylene microplastics on SOC fractions and carbon dioxide (CO₂) and nitrous oxide (N₂O) emissions in two different soils (fluvo-aquic and latosol). Against the background of straw incorporation, microplastics reduced the mineralization and decomposition of SOC, resulting in a microbially available SOC content decrease by 18.9%. In addition, microplastics were carbon-rich, but relatively stable and difficult to be used by microorganisms, thus increasing the mineral-associated SOC content by 52.5%. This indicated that microplastics had adverse effects on microbially available SOC and positive effects on mineral-associated SOC. Microplastics also decreased coarse particulate SOC (>250 μm), and increased non-aggregated silt and clay aggregated SOC (<53 μm). Furthermore, microplastics changed microbial community compositions, thereby reducing the CO₂ and N₂O emissions of straw incorporation by 26.5%–33.9% and 35.4%–39.7%, respectively. These results showed that microplastics partially offset the increase of CO₂ and N₂O emissions induced by straw incorporation. Additionally, the inhibitory effect of microplastics on CO₂ emissions in fluvo-aquic soil was lower than that in latosol soil, whereas the inhibitory effect on N₂O emissions had the opposite trend.

The methylcytosine dioxygenase Ten-eleven translocation 1 (TET1) is an important regulator for the balance of DNA methylation and hydroxymethylation through various pathways. Increasing evidence has suggested that TET1 probably involved in DNA methylation and demethylation dysregulation during chemical carcinogenesis. However, the role and mechanism of TET1 during lung cancer remains unclear. In this study, we found that TET1 expression was significantly down-regulated and the methylation level was significantly up-regulated in 3-methylcholanthrene (3-MCA) induced cell malignant transformation model, rat chemical carcinogenesis model, and human lung cancer tissues. Demethylation experiment further confirmed that DNA methylation negatively regulated TET1 gene expression. TET1 overexpression inhibited cell proliferation, migration and invasion in vitro and in vivo, while knockdown of TET1 resulted in an opposite phenotype. DNA hydroxymethylation level in the promoter region of base excision repair (BER) pathway key genes XRCC1, OGG1, APEX1 significantly decreased and the degree of methylation gradually increased in malignant transformed cells. After differential expression of TET1, the level of hydroxymethylation, methylation and expression of these genes also changed significantly. Furthermore, TET1 binds to XRCC1, OGG1, and APEX1 to maintain them hydroxymethylated. Blockade of BER pathway key gene alone or in combination significantly diminished the effect of TET1. Our study demonstrated for the first time that TET1 expression is regulated by DNA methylation and TET1-mediated hydroxymethylation regulates BER pathway to inhibit the proliferation, migration and invasion during 3-MCA-induced lung carcinogenesis. These results suggested that TET1 gene can be a potential biomarker and therapy target for lung cancer.

Environmental pollution is a widespread problem, which has seriously threatened human health and led to an increase of human diseases. Therefore, it is critical to evaluate environmental pollutants quickly and efficiently. Because of obvious inter-species differences between animals and humans, and lack of physiologically-relevant microenvironment, animal models and in vitro two-dimensional (2D) models can not accurately describe toxicological effects and predicting actual in vivo responses. To make up the limitations of conventional environmental toxicology screening, organ-on-a-chip (OOC) systems are increasingly developing. OOC systems can provide a well-organized architecture with comparable to the complex microenvironment in vivo and generate realistic responses to environmental pollutants. The feasibility, adjustability and reliability of OCC systems make it possible to offer new opportunities for environmental pollutants screening, which can study their metabolism, collective response, and fate in vivo. Further progress can address the challenges to make OCC systems better investigate and evaluate environmental pollutants with high predictive power.

Although many researchers have identified the potential psychological benefits offered by greenness, the association between green space structures and mental disorders is not well understood. The purpose of this study was to identify associations between green space structures and the incidence of bipolar disorder. To this end, we investigated 1,907,776 individuals collected from Taiwan’s National Health Insurance Research Database. After a follow-up investigation from 2005 to 2016, among those with no history of bipolar disorder, 20,548 individuals were further found to be diagnosed with bipolar disorder. A geographic information system and landscape index were used to quantify three indices of green space structures: mean patch area (area and edge), mean fractal dimension index (shape), and mean proximity index (proximity). Additionally, greenness indices, the normalized difference vegetation index, and the enhanced vegetation index were used to confirm the association between greenness and incidence of bipolar disorder. These five indices were used to represent the individual’s exposure according to the township of the hospital that they most frequently visited with symptoms of the common cold. Spearman’s correlation analysis was performed to select variables by considering their collinearity. Subsequently, the frailty model for each index was used to examine the specific associations between those respective indices and the incidence of bipolar disorder by adjusting for related risk factors, such as socioeconomic status, metabolic syndrome, and air pollution. A negative association was identified between the mean patch area and the mean proximity index, and the incidence of bipolar disorder. In contrast, a positive association was found between the mean fractal dimension index and the incidence of bipolar disorder. We observed similar results in sensitivity testing and subgroup analysis. Exposure to green spaces with a larger area, greater proximity, lower complexity, and greener area may reduce the risk of bipolar disorder.

Despite the global occurrence of microplastic contamination on sandy beaches, evidence of microplastic distribution within beaches remains contradictory. When conflicting evidence is used to inform sampling surveys, it increases uncertainty in resulting data. Moreover, it hampers spatially explicit risk characterization of microplastic pollution to intertidal fauna. We aimed to guide sampling designs for microplastic monitoring on beaches, and to quantify macroinfauna exposure to microplastics. Microplastic abundance, quantified between 5 mm–66 μm, lacked a significant zonation across the top sediment layer of sub-terrestrial, upper and lower midlittoral, and swash zones at two sites with varying anthropogenic influence on a microtidal dissipative beach in Uruguay. Microplastic abundance decreased exponentially with increasing grain size, as revealed by Bayesian Poisson regression, although the decrease was less steep compared to prior knowledge regarding sediment – plastic interactions obtained for large (millimeter-sized) industrial pellets. Significant differences in microplastic contamination between the two sites with varying anthropogenic influence likely related to their proximity to a freshwater canal. Corresponding field measurements of body burdens of fibers and irregular particles were significantly lower for the polychaete Euzonus (Thoracophelia) furcifera, despite its preference for finer sediments with higher microplastic loads, compared to the isopods Excirolana braziliensis and Excirolana armata. Results provide critical insights toward representative sampling of microplastics within beach sites. Specifically, we caution against sampling limited to the drift line, and instead recommend: 1) reporting beach morphodynamic characteristics; 2) using clearly defined, ecologically-informed zonation schemes; and 3) accounting for sediment grain size as a covariate to normalize among reported contamination levels. The results contribute valuable baseline data toward realistic exposure landscapes relative to the sediment grain size preferences of macroinfauna, needed to inform laboratory experiments.

Vast areas of Europe were contaminated by the fallout of ¹³⁷Cs and other radionuclides, as a result of the Chernobyl accident in 1986. The post-fallout redistribution of Chernobyl-derived ¹³⁷Cs was associated with erosion and sediment transport processes within the fluvial system. Bottom sediments from lakes and reservoirs can provide a valuable source of information regarding the post-fallout redistribution and fate of ¹³⁷Cs released by the Chernobyl accident. A detailed investigation of sediment-associated ¹³⁷Cs in the bottom sediments of a reservoir in a Chernobyl-affected area in Central Russia has been undertaken. A new approach, based on the vertical distribution of ¹³⁷Cs activity concentrations in the reservoir bottom sediment makes it possible to separate the initially deposited bottom sediment, where the ¹³⁷Cs activity reflects the direct fallout of Chernobyl-derived ¹³⁷Cs to the reservoir surface and its subsequent incorporation into sediment deposited immediately after the accident, from the sediment mobilized from the catchment deposited subsequently. The deposits representing direct fallout from the atmosphere was termed the “Chernobyl peak”. Its shape can be described by a diffusion equation and it can be distinguished from the remaining catchment-derived ¹³⁷Cs associated with sediment accumulated with sediments during the post-Chernobyl period. The ¹³⁷Cs depth distribution above the "Chernobyl peak" was used to provide a record of changes in the concentration of sediment-associated ¹³⁷Cs transported from the upstream catchment during the post-Chernobyl period. It was found that the ¹³⁷Cs activity concentration in the sediment deposited in the reservoir progressively decreased during the 30-year period after the accident due to a reduction in the contribution of sediment eroded from the arable land in the catchment. This reflects a reduction in both the area of cultivated land area and the reduced incidence of surface runoff from the slopes during spring snowmelt due to climate warming.

This paper reports the chemical and light extinction characteristics of fine aerosol (PM₂.₅) during the winter period (2017–18) at Lumbini, Nepal, a rural site on the Indo Gangetic Plains. A modified IMPROVE algorithm was employed to reconstruct light extinction by chemical constituents of aerosol. The fine aerosol levels impacted visibility adversely during daytime, but during nighttime visibility was controlled by fog droplets rather than by aerosols. The PM₂.₅ chemical constituents showed varying characteristics during clear and polluted days. The average NO₃⁻/SO₄²⁻ concentration ratio was 0.57 during clear and 1.36 and polluted days, signifying a change in secondary inorganics and formation processes mainly due to decreasing photochemical production and due to increased partitioning of nitrate particles at a lower temperature. The increased secondary organics contribution and the higher OM/OC ratio (2.2) during polluted days showed the vital role of aqueous processing and biomass burning emissions in determining the concentration of organics. Total light extinction was 2.3 times higher on polluted days compared to clear days, while the PM₂.₅ mass concentration was 1.5 times higher. This variation in mass and extinction order signifies that various chemical components in fine particles have a more considerable impact on light extinction. On clear days we found that carbonaceous particles (OM and EC) made a major contribution to light extinction. In contrast, the extinction contribution by secondary inorganic (especially NH₄NO₃) increased significantly during polluted days, with hygroscopic growth and enhanced scattering efficiency at higher RH conditions playing a major role. The comparison between clear and polluted days altogether suggests that regulating the nitrate sources can help significantly in improving the visibility levels and restrict fog haze development during wintertime in rural IGP.