Rapid haplotype inference for nuclear families
2010
Williams, Amy L. | Housman, David E. | Rinard, Martin C | Gifford, David K
Hapi is a new dynamic programming algorithm that ignores uninformative states and state transitions in order to efficiently compute minimum-recombinant and maximum likelihood haplotypes. When applied to a dataset containing 103 families, Hapi performs 3.8 and 320 times faster than state-of-the-art algorithms. Because Hapi infers both minimum-recombinant and maximum likelihood haplotypes and applies to related individuals, the haplotypes it infers are highly accurate over extended genomic distances.
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书目信息
Genome biology
ISSN
1474-760X
出版者
Elsevier B.V.
其它主题
Nuclear family
语言
英语
许可
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类型
Text; Journal Article
2024-02-29
MODS