Evolution of genes and genomes on the Drosophila phylogeny
2007
Drosophila 12 Genomes Consortium, . | Clark, Andrew G | Eisen, Michael B | Smith, Douglas R | Bergman, Casey M | Oliver, Brian | Markow, Therese A | Kaufman, Thomas C | Kellis, Manolis | Gelbart, William | Iyer, Venky N | Pollard, Daniel A | Sackton, Timothy B | Larracuente, Amanda M. | Singh, Nadia D | Abad, Jose P | Abt, Dawn N | Adryan, Boris | Aguade, Montserrat | Akashi, Hiroshi | Anderson, Wyatt W | Aquadro, Charles F | Ardell, David H | Arguello, Roman | Artieri, Carlo G | Barbash, Daniel A | Barker, Daniel | Barsanti, Paolo | Batterham, Phil | Batzoglou, Serafim | Begun, Dave | Bhutkar, Arjun | Blanco, Enrico | Bosak, Stephanie A | Bradley, Robert K | Brand, Adrianne D | Brent, Michael R | Brooks, Angela N | Brown, Randall H | Butlin, Roger K | Caggese, Corrado | Calvi, Brian R | Bernardo de Carvalho, A | Caspi, Anat | Castrezana, Sergio | Celniker, Susan E | Chang, Jean L | Chapple, Charles | Chatterji, Sourav | Chinwalla, Asif | Civetta, Alberto | Clifton, Sandra W | Comeron, Josep M | Costello, James C | Coyne, Jerry A | Daub, Jennifer | David, Robert G | Delcher, Arthur L | Delehaunty, Kim | Do, Chuong B | Ebling, Heather | Edwards, Kevin | Eickbush, Thomas | Evans, Jay D | Filipski, Alan | Findeiss, Sven | Freyhult, Eva | Fulton, Lucinda | Fulton, Robert | Garcia, Ana C L | Gardiner, Anastasia | Garfield, David A | Garvin, Barry E | Gibson, Greg | Gilbert, Don | Gnerre, Sante | Godfrey, Jennifer | Good, Robert | Gotea, Valer | Gravely, Brenton | Greenberg, Anthony J | Griffiths-Jones, Sam | Gross, Samuel | Guigo, Roderic | Gustafson, Erik A | Haerty, Wilfried | Hahn, Matthew W | Halligan, Daniel L | Halpern, Aaron L | Halter, Gillian M | Han, Mira V | Heger, Andreas | Hillier, Ladeana | Hinrichs, Angie S | Holmes, Ian | Hoskins, Roger A | Hubisz, Melissa J | Hultmark, Dan | Huntley, Melanie A | Jaffe, David B | Jagadeeshan, Santosh | Jeck, William R | Johnson, Justin | Jones, Corbin D | Jordan, William C | Karpen, Gary H | Kataoka, Eiko | Keightley, Peter D | Kheradpour, Pouya | Kirkness, Ewen F | Koerich, Leonardo B | Kristiansen, Karsten | Kudrna, Dave | Kulathinal, Rob J | Kumar, Sudhir | Kwok, Roberta | Lander, Eric | Langley, Charles H | Lapoint, Richard | Lazzaro, Brian P | Lee, So-Jeong | Levesque, Lisa | Li, Ruiqiang | Lin, Chiao-Feng | Lin, Michael F | Lindblad-Toh, Kerstin | Llopart, Ana | Long, Manyuan | Low, Lloyd | Lozovsky, Elena | Lu, Jian | Luo, Meizhong | Machado, Carlos A | Makalowski, Wojciech | Marzo, Mar | Matsuda, Muneo | Matzkin, Luciano | Mcallister, Bryant | Mcbride, Carolyn S | Mckernan, Brendan | Mckernan, Kevin | Mendez-Lago, Maria | Minx, Patrick | Mollenhauer, Michael U | Montooth, Kristi | Mount, Stephen M | Mu, Xu | Myers, Eugene | Negre, Barbara | Newfeld, Stuart | Nielsen, Rasmus | Noor, Mohamed a F | O'Grady, Patrick | Pachter, Lior | Papaceit, Montserrat | Parisi, Matthew J | Parisi, Michael | Parts, Leopold | Pedersen, Jakob S | Pesole, Graziano | Phillippy, Adam M | Ponting, Chris P | Pop, Mihai | Porcelli, Damiano | Powell, Jeffrey R | Prohaska, Sonja | Pruitt, Kim | Puig, Marta | Quesneville, Hadi | Ram, Kristipati Ravi | Rand, David | Rasmussen, Matthew D | Reed, Laura K | Reenan, Robert | Reily, Amy | Remington, Karin A | Rieger, Tania T | Ritchie, Michael G | Robin, Charles | Rogers, Yu-Hui | Rohde, Claudia | Rozas, Julio | Rubenfield, Marc J | Ruiz, Alfredo | Russo, Susan | Salzberg, Steven L | Sanchez-Gracia, Alejandro | Saranga, David J | Sato, Hajime | Schaeffer, Stephen W | Schatz, Michael C | Schlenke, Todd | Schwartz, Russell | Segarra, Carmen | Singh, Rama S | Sirot, Laura | Sirota, Marina | Sisneros, Nicholas B | Smith, Chris D | Smith, Temple F | Spieth, John | Stage, Deborah E | Stark, Alexander | Stephan, Wolfgang | Strausberg, Robert L | Strempel, Sebastian | Sturgill, David | Sutton, Granger | Sutton, Granger G | Tao, Wei | Teichmann, Sarah | Tobari, Yoshiko N | Tomimura, Yoshihiko | Tsolas, Jason M | Valente, Vera L S | Venter, Eli | Venter, J Craig | Vicario, Saverio | Vieira, Filipe G | Vilella, Albert J | Villasante, Alfredo | Walenz, Brian | Wang, Jun | Wasserman, Marvin | Watts, Thomas | Wilson, Derek | Wilson, Richard K | Wing, Rod A | Wolfner, Mariana F | Wong, Alex | Wong, Gane Ka-Shu | Wu, Chung-I | Wu, Gabriel | Yamamoto, Daisuke | Yang, Hsiao-Pei | Yang, Shiaw-Pyng | Yorke, James A | Yoshida, Kiyohito | Zdobnov, Evgeny | Zhang, Peili | Zhang, Yu | Zimin, Aleksey V | Baldwin, Jennifer | Abdouelleil, Amr | Abdulkadir, Jamal | Abebe, Adal | Abera, Brikti | Abreu, Justin | Acer, St Christophe | Aftuck, Lynne | Alexander, Allen | An, Peter | Anderson, Erica | Anderson, Scott | Arachi, Harindra | Azer, Marc | Bachantsang, Pasang | Barry, Andrew | Bayul, Tashi | Berlin, Aaron | Bessette, Daniel | Bloom, Toby | Blye, Jason | Boguslavskiy, Leonid | Bonnet, Claude | Boukhgalter, Boris | Bourzgui, Imane | Brown, Adam | Cahill, Patrick | Channer, Sheridon | Cheshatsang, Yama | Chuda, Lisa | Citroen, Mieke | Collymore, Alville | Cooke, Patrick | Costello, Maura | d'Aco, Katie | Daza, Riza | de Haan, Georgius | Degray, Stuart | Demaso, Christina | Dhargay, Norbu | Dooley, Kimberly | Dooley, Erin | Doricent, Missole | Dorje, Passang | Dorjee, Kunsang | Dupes, Alan | Elong, Richard | Falk, Jill | Farina, Abderrahim | Faro, Susan | Ferguson, Diallo | Fisher, Sheila | Foley, Chelsea D | Franke, Alicia | Friedrich, Dennis | Gadbois, Loryn | Gearin, Gary | Gearin, Christina R | Giannoukos, Georgia | Goode, Tina | Graham, Joseph | Grandbois, Edward | Grewal, Sharleen | Gyaltsen, Kunsang | Hafez, Nabil | Hagos, Birhane | Hall, Jennifer | Henson, Charlotte | Hollinger, Andrew | Honan, Tracey | Huard, Monika D | Hughes, Leanne | Hurhula, Brian | Husby, M Erii | Kamat, Asha | Kanga, Ben | Kashin, Seva | Khazanovich, Dmitry | Kisner, Peter | Lance, Krista | Lara, Marcia | Lee, William | Lennon, Niall | Letendre, Frances | Levine, Rosie | Lipovsky, Alex | Liu, Xiaohong | Liu, Jinlei | Liu, Shangtao | Lokyitsang, Tashi | Lokyitsang, Yeshi | Lubonja, Rakela | Lui, Annie | Macdonald, Pen | Magnisalis, Vasilia | Maru, Kebede | Matthews, Charles | Mccusker, William | Mcdonough, Susan | Mehta, Teena | Meldrim, James | Meneus, Louis | Mihai, Oana | Mihalev, Atanas | Mihova, Tanya | Mittelman, Rachel | Mlenga, Valentine | Montmayeur, Anna | Mulrain, Leonidas | Navidi, Adam | Naylor, Jerome | Negash, Tamrat | Nguyen, Thu | Nguyen, Nga | Nicol, Robert | Norbu, Choe | Norbu, Nyima | Novod, Nathaniel | O'Neill, Barry | Osman, Sahal | Markiewicz, Eva | Oyono, Otero L | Patti, Christopher | Phunkhang, Pema | Pierre, Fritz | Priest, Margaret | Raghuraman, Sujaa | Rege, Filip | Reyes, Rebecca | Rise, Cecil | Rogov, Peter | Ross, Keenan | Ryan, Elizabeth | Settipalli, Sampath | Shea, Terry | Sherpa, Ngawang | Shi, Lu | Shih, Diana | Sparrow, Todd | Spaulding, Jessica | Stalker, John | Stange-Thomann, Nicole | Stavropoulos, Sharon | Stone, Catherine | Strader, Christopher | Tesfaye, Senait | Thomson, Talene | 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School of Biology ; IE University | Università degli studi di Bari Aldo Moro = University of Bari Aldo Moro (UNIBA) | Department of Genetics ; University of Melbourne | Stanford University | University of California [Davis] (UC Davis) ; University of California (UC) | Boston University [Boston] (BU) | Centro de Regulación Genómica (CRG) ; Universitat Pompeu Fabra [Barcelona] (UPF) | Washington University in Saint Louis (WUSTL) | University of Sheffield | Department of Biology ; Syracuse University | Universidade Federal Rural do Rio de Janeiro (UFRRJ) | Department of Bioengineering ; Beihang University (BUAA) | Tucson Stock Center ; Partenaires INRAE | Genome Center ; University of California [Davis] (UC Davis) ; University of California (UC)-University of California (UC) | Genome Sequencing Center ; Washington University School of Medicine in St. Louis ; Washington University in Saint Louis (WUSTL)-Washington University in Saint Louis (WUSTL) | University of Winnipeg | Iowa State 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Craig Venter Institute [La Jolla, USA] (JCVI) | University of Oxford | Center for Biomolecular Science and Engineering ; University of California (UC) | Unité de Recherche Génomique Info (URGI) ; Institut National de la Recherche Agronomique (INRA)
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显示更多 [+] 显示较少 [-]英语. Comparative analysis of multiple genomes in a phylogenetic framework dramatically improves the precision and sensitivity of evolutionary inference, producing more robust results than single-genome analyses can provide. The genomes of 12 Drosophila species, ten of which are presented here for the first time (sechellia, simulans, yakuba, erecta, ananassae, persimilis, willistoni, mojavensis, virilis and grimshawi), illustrate how rates and patterns of sequence divergence across taxa can illuminate evolutionary processes on a genomic scale. These genome sequences augment the formidable genetic tools that have made Drosophila melanogaster a pre-eminent model for animal genetics, and will further catalyse fundamental research on mechanisms of development, cell biology, genetics, disease, neurobiology, behaviour, physiology and evolution. Despite remarkable similarities among these Drosophila species, we identified many putatively non-neutral changes in protein-coding genes, non-coding RNA genes, and cis-regulatory regions. These may prove to underlie differences in the ecology and behaviour of these diverse species.
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