Beyond Domestic Cats: Environmental Detection of <i>Sporothrix brasiliensis</i> DNA in a Hyperendemic Area of Sporotrichosis in Rio de Janeiro State, Brazil

In Brazil, sporotrichosis has transitioned from a rural to urban disease, driven by a shift in the initiation of infection from the accidental inoculation of organic matter to the traumatic implantation of the fungus by cats. Since the emergence of zoonotic sporotrichosis caused by <i>Sporothrix brasiliensis</i>, investigations have largely ignored the environmental habitat of the pathogen due to its association with domestic cats. Therefore, we investigated 18 environmental samples collected from rural areas of two cities where zoonotic sporotrichosis is endemic, but where domestic cats are scarce. We utilized traditional culture methods, and samples were also examined with two molecular methods used for the clinical diagnosis of sporotrichosis: a nested-PCR targeting the ITS region and a species-specific PCR targeting the calmodulin gene. No <i>Sporothrix</i> colonies were identified by traditional culture methods. However, the nested-PCR and the species-specific PCR for <i>S. brasiliensis</i> were positive for 18 and 5 samples, respectively. Sequencing revealed that positive results with the nested-PCR were due to non-specific amplification of other Ophiostomatales DNA, rather than <i>Sporothrix</i> spp. Three of the five amplicons from the species-specific PCR were suitable for sequencing and confirmed the presence of <i>S. brasiliensis</i> DNA. Hence, we confirmed that <i>S. brasiliensis</i>, as with other <i>Sporothrix</i> species, has an environmental habitat. Our findings underscore the challenges of nested-PCR for <i>Sporothrix</i> environmental studies and highlight that sequencing must follow PCR protocols to definitively identify <i>Sporothrix</i> spp. in environmental samples.