Plastic debris is ubiquitous in the marine environment and the world's shores represent a major sink. However, knowledge about plastic abundance in remote areas is scarce. Therefore, plastic abundance was investigated on a small island of the Maldives. Plastic debris (>1mm) was sampled once in natural long-term accumulation zones at the north shore and at the high tide drift line of the south shore on seven consecutive days to quantify daily plastic accumulation. Reliable identification of plastic debris was ensured by FTIR spectroscopy. Despite the remoteness of the island a considerable amount of plastic debris was present. At both sites a high variability in plastic abundance on a spatial and temporal scale was observed, which may be best explained by environmental factors. In addition, our results show that snapshot sampling may deliver biased results and indicate that future monitoring programs should consider spatial and temporal variation of plastic deposition.

Fifty two surface sediments were collected from the northern part of the Gulf of Mannar biosphere reserve to assess the geospatial risk of sediments. We found that distribution of organic matter and CaCO3 distributions were locally controlled by the mangrove litters and fragmented coral debris. In addition, Fe and Mn concentrations in the marine sediments were probably supplied through the riverine input and natural processes. The Geo-accumulation of elements fall under the uncontaminated category except Pb. Lead show a wide range of contamination from uncontaminated-moderately contaminated to extremely contaminated category. The sediment toxicity level of the elements revealed that the majority of the sediments fall under moderately to highly polluted sediments (23.07–28.84%). The grades of potential ecological risk suggest that predominant sediments fall under low to moderate risk category (55.7–32.7%). The accumulation level of trace elements clearly suggests that the coral reef ecosystem is under low to moderate risk.

Three to six-month-old juveniles of Acropora tenuis, A. millepora and Pocillopora acuta were experimentally co-exposed to nutrient enrichment and suspended sediments (without light attenuation or sediment deposition) for 40days. Suspended sediments reduced survivorship of A. millepora strongly, proportional to the sediment concentration, but not in A. tenuis or P. acuta juveniles. However, juvenile growth of the latter two species was reduced to less than half or to zero, respectively. Additionally, suspended sediments increased effective quantum yields of symbionts associated with A. millepora and A. tenuis, but not those associated with P. acuta. Nutrient enrichment did not significantly affect juvenile survivorship, growth or photophysiology for any of the three species, either as a sole stressor or in combination with suspended sediments. Our results indicate that exposure to suspended sediments can be energetically costly for juveniles of some coral species, implying detrimental longer-term but species-specific repercussions for populations and coral cover.

Coral skeletal growth anomaly (GA) is a common coral disease. Although extensive ecological characterizations of coral GA have been performed, the molecular pathology of this disease remains largely unknown. We compared the meta-transcriptome of normal and GA-affected polyps of Platygyra carnosa using RNA-Seq. Approximately 50 million sequences were generated from four pairs of normal and GA-affected tissue samples. There were 109 differentially expressed genes (DEGs) in P. carnosa and 31 DEGs in the coral symbiont Symbiodinium sp. These differentially expressed host genes were enriched in GO terms related to osteogenesis and oncogenesis. There were several differentially expressed immune genes, indicating the presence of both bacteria and viruses in GA-affected tissues. The differentially expressed Symbiodinium genes were enriched in reproduction, nitrogen metabolism and pigment formation, indicating that GA affects the physiology of the symbiont. Our results have provided new insights into the molecular pathology of coral GA.

We investigated the potential of coral skeleton δ15N (CS-δ15N) records for tracking anthropogenic-N sources in coral reef ecosystems. We produced a 56yr-long CS-δ15N record (1958–2014) from a reef flat in Guam that has been exposed to varying 1) levels of sewage treatment 2) population density, and 3) land use. Increasing population density (from <30 to 300ind·km−2) and land use changes in the watershed resulted in a ~1‰ enrichment of the CS-δ15N record until a sewage treatment plant (STP) started operation in 1975. Then, CS-δ15N stabilized, despite continued population density and land use changes. Based on population and other considerations, a continued increase in the sewage footprint might have been expected over this time. The stability of CS-δ15N, either contradicts this expectation, or indicates that the impacts on the outer reef at the coring site were buffered by the mixing of reef water with the open ocean.

For centuries, Bermuda has been challenged with wastewater management for the protection of human and environmental health. By quantifying the δ15N of the common sea fan Gorgonia ventalina sampled from 30 sites throughout Bermuda we show that sewage-derived nitrogen is detectable on nearshore coral reefs and declines across the lagoon to the outer rim. We also sampled gorgonians from two museum collections representing a 50y time-series (1958–2008). These samples revealed an increase in δ15N of >4.0‰ until the mid-1970s, after which δ15N values slowly declined by ~2.0‰. A δ15N chronology from a gorgonian skeleton exhibited a similar decline over the last 30–40years of approximately 0.6‰. We conclude that policies have been effective in reducing sewage impacts to Bermudian reefs. However, significant sources of sewage pollution persist and are likely have a strong impact on harbor and nearshore coral communities and human health.

Extensive field work was conducted in order to assess the sediment pollution level and potential ecological risk on coral reef ecosystem. Thirty three surface sample was collected using grid sampling technique. The calcium carbonate and organic matter were primarily controlled by the distribution of coral rubbles and seagrass meadows. The concentration of trace elements is higher than the crustal average in few locations and the same result was derived from index calculations. However, the significant concentration of lead was observed throughout the study area. The elevated level of lead is probably due to coal incinerating power plants, and confluence of urban runoff from the nearby coastal areas. Based on the sediment pollution index, the majority of the sediments belongs to highly polluted to dangerously polluted category. The ecological risk indicates that the sediments are under low risk to moderate risk category and this result was proved by correlation analysis.

Studies of shelter use can provide key insights into the ecology, and structural needs of mobile organisms. Using videos, we examined the usage of tabular corals by large reef fishes, over a 10week period, compared to multiple environmental drivers: visibility, tide (and depth), irradiance, wind speed (as a proxy for wave energy) and water temperature. We found that two of these predictor variables (visibility and wind speed) had a significant effect and together accounted for almost half of the variation in tabular coral usage by fishes. Increases in both variables correlated with increased shelter use. To date use of shelters by fishes has primarily been attributed to UV avoidance. Our results support this notion as more turbid conditions (reduced visibility) have an attenuating effect on UV irradiance. Additionally, tabular corals may reduce the energetic costs of increased wave energy by reducing incidental water velocity beneath the structure.

Mesel gold mine, Ratatotok Sub-district, North Sulawesi, Indonesia deposited about 4.5millionm3 of detoxified tailings containing arsenic (As) and mercury (Hg) via a submarine pipeline into Buyat Bay. As and Hg analysis of 216 fish muscle tissue composites from subsistence fishermen, local markets and a reference market confirmed that mean As levels were comparable between locations (range 1.71 to 2.12mg/kg wet weight (ww)) and <10% of the Australia New Zealand standard. Mean Hg concentrations were highest for the artisanal fishermen group (0.23mg/kg ww), similar between the local markets (0.11–0.14mg/kg ww) and lower at the reference market (0.04mg/kg ww). A 12-month fish availability study identified that the results were due to the different coral and deep ocean species assemblages. All mean values were <50% of the FAO/WHO/Codex standard for Hg. The results confirmed that there was no contamination from the deposited submarine tailings.

Reef Check Australia (RCA) has collected data on benthic composition and cover at >70 sites along >1000km of Australia's Queensland coast from 2002 to 2015. This paper quantifies the accuracy, precision and power of RCA benthic composition data, to guide its application and interpretation. A simulation study established that the inherent accuracy of the Reef Check point sampling protocol is high (<±7% error absolute), in the range of estimates of benthic cover from 1% to 50%. A field study at three reef sites indicated that, despite minor observer- and deployment-related biases, the protocol does reliably document moderate ecological changes in coral communities. The error analyses were then used to guide the interpretation of inter-annual variability and long term trends at three study sites in RCA's major 2002–2015 data series for the Queensland coast.