Fifteen endophytic isolates were recovered from the phytoremediator plant Phragmites. Phylogenetic analysis revealed they were primarily from the class Sordariomycetes and Dothiodiomycetes. Most of the endophytes in Sordariomycetes were from the orders Diaporthales (six isolates, e.g., Diaporthe, Phomopsis), Hypocreales (two isolates, e.g., Gliomastix, Trichoderma), and Xylariales (one isolate, e.g., Arthrinium), while members from Dothideomycetes were from the order Pleosporales (six isolates, e.g., Bipolaris, Curvularia, Microsphaeropsis, Saccharicola). The endophytes demonstrated varying responses to the metals (Al³⁺, Cu²⁺, Zn²⁺, Pb²⁺, and Cd²⁺) and concentrations (10, 25, 50, 100, and 200 mg L⁻¹) tested, with isolates of Dothideomycetes predominantly more tolerable to metals (80–97% tolerance) than Sordariomycetes (73–90% tolerance). Pb²⁺ was the least harmful towards the endophytes, while Al³⁺ appeared to be highly toxic with mean tolerable range (TR) of > 200 and 25–50 mg L⁻¹, respectively. Endophytes thriving in toxic metals may further be applied for biocontrol, bioremediation, or growth-promoting purposes in metal-contaminated areas.

An endophytic isolate identified as Diaporthe sp. was explored for its biosorption and biodegradation potential on triphenylmethane (TPM) dyes. Treatment with live cells demonstrated strong decolorization activities towards methyl violet (MV, 100 mg L⁻¹), crystal violet (CV, 100 mg L⁻¹), and malachite green (MG, 50 mg L⁻¹), with 84.87, 78.81, and 87.80 %, respectively. These values are far greater than decolorization by dead cells via biosorption (DE% of 18.82–48.32 %). The absence of peaks in the UV-vis spectra after 14 days further suggested degradation of dye chromophores. Results revealed that Diaporthe sp. removed TPM dyes through biodegradation and biosorption, with the former as a more desirable mechanism due to its ability to degrade most dye chromophore and enhance decolorization efficiency, and as a mechanism to tolerate toxic MG. As such, application of live cells of Diaporthe sp. is advantageous as it allows biodegradation to occur.

Improving the competitiveness of biodiesel production by microalgae cultures requires the application of several strategies to obtain a high content of lipids, rapid biomass growth and a capacity to adapt to different kinds of environment, with the aim of using non-renewable nutrient sources. Therefore, the use of an individual indigenous microalgae strain or a consortium from natural or anthropogenic sites is now considered an alternative for biofuel production. This study examined the temporal behaviour of secondary metabolites produced by a native microalgae and yeast consortium isolated from wastewater, which was characterized by a genetic identification method based on the MiSeq system. The predominant species in the consortium was Scenedesmus obliquus, representing 68% of the organisms. In addition, the consortium contained a number of yeast species, including Candida pimensis (43%), Arthroderma vanbreuseghemii (23%), Diaporthe aspalathi/Diaporthe meridionalis (25%) and Hericium americanum (3%). This indigenous co-culture of microalgae and yeast showed biomass productivity of 0.06 g l⁻¹ day⁻¹, with a content of 30% (w/w) carbohydrates, 4% (w/w) proteins and 55% (w/w) lipids. Transesterification of the extracted lipids produced fatty acid methyl esters (FAMEs), which were analysed by gas chromatography (GC). The FAMEs included methyl pentadecanoate (1.90%), cis-10-pentanedecanoic acid methyl ester (1.36%), methyl palmitate (2.64%), methyl palmitoleate (21.36%), methyl oleate (64.95%), methyl linolenate (3.83%) and methyl linolelaidate (3.95%). This composition was relevant for biodiesel production based on the co-culture of indigenous microalgae and yeast consortia.