As a common natural phenomenon, corpse decomposition may lead to serious environmental pollution such as nitrogen pollution. However, less is known about antibiotic resistance genes (ARGs), an emerging contaminant, during corpse degradation. Here, ARGs and microbiome in three soil types (black, red and yellow soil) have been investigated between experimental and control groups based on next-generation sequencing and high-throughput quantitative PCR techniques. We found that the absolute abundance of total ARGs and mobile genetic elements (MGEs) in the experimental groups were respectively enriched 536.96 and 240.60 times in different soil types, and the number of ARGs in experimental groups was 7–25 more than that in control groups. For experimental groups, the distribution of ARGs was distinct in different soil types, but sulfonamide resistance genes were always enriched. Corpse decomposition was a primary determinant for ARGs profiles. Microbiome, NH₄⁺ concentrates and pH also significantly affected ARGs profiles. Nevertheless, soil types had few effects on ARGs. For soil microbiome, some genera were elevated in experimental groups such as the Ignatzschineria and Myroides. The alpha diversity is decreased in experimental groups and microbial community structures are different between treatments. Additionally, the Escherichia and Neisseria were potential pathogens elevated in experimental groups. Network analysis indicated that most of ARGs like sulfonamide and multidrug resistance genes presented strong positively correlations with NH₄⁺ concentrates and pH, and some genera like Ignatzschineria and Dysgonomonas were positively correlated with several ARGs such as aminoglycoside and sulfonamide resistance genes. Our study reveals a law of ARGs’ enrichment markedly during corpse decomposing in different soil types, and these ARGs contaminant maintaining in environment may pose a potential threat to environmental safety and human health.

Infection caused by pathogenic bacteria carrying antibiotic resistance genes (ARGs) is a serious challenge to human health. Water environment, including water and surface sediments, is an important repository of ARGs, and the activity of aquatic animal can affect the development of ARG pollution in the water environment. Macrobenthic invertebrates are an important component of aquatic ecosystems, and their effects on ARG development in aquatic environments remain unreported. The distribution of ARGs, including tetA gene, sul2 gene, and kan gene, in Chironomidae larvae is demonstrated in this study for the first time. The ARG distribution was related to sampling points, metal elements, and seasons. Animal models demonstrated that Chironomidae larvae enriched ARGs from water and passed them on to downstream predators in the food chain. Conjugative transfer mediated by resistant plasmids was crucial in the spread of ARG in Chironomidae larvae, and upregulated expression of trfAp gene and trbBp gene was the molecular mechanism. Escherichia in Proteobacteria and Flavobacterium in Bacteroidetes, which are gram-negative bacteria in Chironomidae larvae, are the primary host bacteria of ARGs confirmed via resistance screening and DNA sequencing of V4 region of 16S rRNA gene. Feeding experiments further confirmed that ARGs from Chironomidae larvae can be enriched in the fish gut. Research gaps in food chain between sediments and fish are addressed in this study, and Chironomidae larvae is an important enricher of ARGs in the freshwater environment.

Textile wastewater contains a huge amount of azo dyes and heavy metals and catastrophically deteriorates the agricultural field by affecting its phyisco-chemical/biological and nutritional properties when directly drained to agricultural lands without any treatment. Recently, biogenic copper nanoparticles (CuNPs) have gained considerable attention for photocatalytic degradation of wastewater pollutants owing to their unique physico-chemical and biological properties, low cost and environmental sustainability. The current study reports the synthesis of CuNPs by a native copper-resistant bacterial strain Escherichia sp. SINT7 and evaluation of the photocatalytic activity of the biogenic CuNPs for azo dye degradation and treatment of textile effluents. Scanning electron microscopy and transmission electron microscopy revealed the spherical shape of biogenic CuNPs with particle size ranging from 22.33 to 39 nm. Moreover, X-ray diffraction data revealed that the CuNPs have spherical crystalline shapes with an average particle size of 28.55 nm. FTIR spectra showed the presence of coating proteins involved in the stabilization of nanomaterial. Azo dye degradation assays indicated that CuNPs decolorized congo red (97.07%), malachite green (90.55%), direct blue-1 (88.42%) and reactive black-5 (83.61%) at a dye concentration of 25 mg L⁻¹ after 5 h of sunlight exposure. However, at 100 mg L⁻¹ dye concentration, the degradation percentage was found to be 83.90%, 31.08%, 62.32% and 76.84% for congo red, malachite green, direct blue-1 and reactive black-5, respectively. Treatment of textile effluents with CuNPs resulted in a significant reduction in pH, electrical conductivity, turbidity, total suspended solids, total dissolved solids, hardness, chlorides and sulfates as compared to the non-treated samples. Thus, the promising dye detoxification and textile effluent recycling efficiency of biogenic CuNPs may lead to the development of eco-friendly and cost-efficient process for large-scale wastewater treatment.

Particulate matter (PM) released from the processes of livestock production has a negative impact on the health of animals and workers. Herein, the concentration, major chemical components, morphology and microbiological compositions of particulate matter 2.5 (PM2.5, particles with aerodynamic diameter less than 2.5 μm) in a broiler breeding house were investigated. The results showed that the PM2.5 distribution in the chicken house was affected by the illumination, draught fans, chicken frame structure and activity of the chickens in the broiler breeding house. Component analysis showed that organic carbon (OC) accounted for the largest proportion, and followed by element carbon (EC), SO42−, NO3−, NH4+, Na+, K+ and Ca2+. Ultrastructural observations revealed that the shape of PM2.5 had a round, rectangular, chain-like and irregular shape. The concentration of endotoxin was approximately 0.3 EU/m3. Microbiological analysis showed that at the genus level, the pathogenic bacteria included Staphylococcus, Corynebacterium, Enterococcus, Parabacteroides, Escherichia and Megamonas. The abundant harmful fungi were Aspergillus, Scopulariopsis, Wallemia, and Fusarium. Through redundancy analysis (RDA) analysis, we determined that OC, EC, Na+, K+, and NH4+ had strong correlations with Brachybacterium, Brevibacterium, Corynebacterium, Escherichia, Scopulariopsis and Microascus. SO42− was closely related to Scopulariopsis and Salinicoccus. Salinicoccus was also strongly correlated with NO3−. Our results indicated that feed, faeces, and outside soot are contributed to the increase in PM2.5 concentration in the chicken house, while the sources of the dominant bacterial and fungi might be feed, faeces, suspended outside soil and cereal crops.

Diverse antibiotic-resistance genes (ARGs) are frequently reported to have high prevalence in veterinary manure samples due to extensive use of antibiotics in farm animals. However, the characteristics of the distribution and transmission of ARGs among bacteria, especially among different species of multiple antibiotic-resistant bacteria (MARB), have not been well explored. By applying high-throughput sequencing methods, our study uncovered a vast MARB reservoir in livestock manure. The genera Escherichia, Myroides, Acinetobacter, Proteus, Ignatzschineria, Alcaligenes, Providencia and Enterococcus were the predominant cultivable MARB, with compositions of 40.6%–85.7%. From chicken manure isolates, 33 MARB were selected for investigation of the molecular characteristics of antibiotic resistance. A total of 61 ARGs and 18 mobile genetic elements (MGEs) were investigated. We found that 47 ARGs were widely distributed among the 33 MARB isolates. Each isolate carried 27–36 genes responsible for resistance to eight classes of antibiotics frequently used in clinic or veterinary settings. ARGs to the six classes of antibiotics other than streptogramins and vancomycin were present in all 33 MARB isolates with a prevalence of 80%–100%. A total of 12 MGEs were widely distributed among the 33 MARB, with intI1, IS26, ISaba1, and ISEcp1 simultaneously present in 100% of isolates. In addition, 9 gene cassettes within integrons and ISCR1 were detected among MARB isolates encoding resistance to different antibiotic classes. This is the first report revealing the general co-presence of multiple ARGs, various MGEs and ARG cassettes in different species of individual MARB isolates in chicken manure. The results highlight a much higher risk of ARGs spreading through livestock manure to humans than we expected.

This study investigated Enterobacteriales and their antimicrobial resistance in green sea turtles captured adjacent to the central Great Barrier Reef (GBR) and proximate to urban development. Cloacal swabs were taken from 73 green turtles between 2015 and 2016. A total of 154 out of 341 Gram-negative bacterial isolates were identified as Enterobacteriales that represent 16 different species from 9 different genera. The dominant isolates were Citrobacter (30.52%), Edwardsiella (21.43%) and Escherichia (12.34%). The resistance against 12 antibiotics belonging to 6 different classes was determined. The isolates showed highest resistance to β-lactam antibiotics (78.57%) followed by quinolone (50%) and tetracycline classes (46.1%). Approximately one-third (37.7%) of the isolates identified exhibited multidrug-resistance. Isolates recovered from rehabilitated turtles were significantly multidrug resistant (p<0.009) compared to isolates from other study sites. These results provide baseline information on antimicrobial resistance while revealing gaps for further research to evaluate the level of pollution in the GBR.

From 2006 to 2008, microbial water quality was monitored along the Georgian coast of the Black Sea. Temperature, pH, salinity, and dissolved oxygen were measured, along with a variety of aquatic microbial parameters, including heterotrophic plate count (HPC), total culturable bacterial count (TCBC), and chlorophyll a (Chl-a) concentration. Total and fecal coliforms and total enterococci counts were recorded as indicators of fecal pollution. Vibrio bacteria, and Escherichia coli- and Vibrio-specific bacteriophages were isolated and enumerated to determine their relationships to standard marine pollution indicators. Persistent microbial pollution was observed, particularly in the summer months, with a higher rate of contamination in estuaries. Microbial indicators generally showed seasonal dependence, suggesting that temperature may influence bacterial dynamics in this environment. No correlation was apparent between fecal pollution indicators and physical–chemical and aquatic microbial parameters, although there were significant relationships amongst the indicators themselves, as well as with the prevalence of Vibrio bacteria and phage.

Wastewater treatment plants (WWTPs), usually designed to remove organic pollutants and nutrients, are often poorly equipped to handle pathogens. The present study investigated the multiple barriers provided by WWTPs to understand their role in spreading pathogenic bacteria into the environment. Three types of WWTPs (hospital, domestic, and mixed) differing in the source of raw influent, operating parameters, and reactor configuration (biological and tertiary treatment processes) were compared for the presence of fecal indicators and pathogenic bacteria discharged in their treated effluents. The plate-count technique was used for bacterial enumeration on selective agar. The microbial quality of the treated effluent was observed to be strongly influenced by characteristics inherent to a WWTP rather than depending on the characteristics of the raw influent. Among the different configurations studied, membrane bioreactor (MBR) treatment followed by chlorine disinfection provided an effluent of the highest quality (100% bacterial removal rates) followed by moving bed bioreactor (MBBR) combined with UV disinfection. MBR treatment greatly increased the efficiency of chlorine disinfection. Higher total suspended solids (TSS) removal corresponded to higher bacterial removal rates. Tertiary treatment proved to be an important determinant of the microbial quality of the final effluent. A great heterogeneity was observed in the removal rates of different bacterial groups with different treatment processes. The highest removal was observed in the case of indicators and least in the case of emerging pathogens like Escherichia coliO157: H7 indicating a lack of correlation between traditional indicators and emerging pathogens and also the inefficiency of the current wastewater treatment technologies in dealing with emerging pathogens.

Bioaerosols in commercial livestock barns threaten the health of animals and humans. To better understand microbial dynamics in the layer house, we characterized and compared the size-segregated bacterial community of the manure cleaning process in a typical commercial laying hen house equipped with an H-type manure removal belt and negative pressure tunnel ventilation system in Ningbo, China by using full-length 16S rRNA gene sequences. The third-generation single-molecule real-time sequencing (SMRT Cell) based on the Pacific BioSciences (PacBio) RS II platform was performed for capturing sequence information of the microbial aerosol samples. The results showed that the concentrations of total airborne bacteria in the layer house were in the range of 0.35 × 10³ CFU/m³ to 0.70 × 10³ CFU/m³, 2.76 × 10³ CFU/m³ to 2.88 × 10³ CFU/m³, and 2.10 × 10³ CFU/m³ to 2.54 × 10³ CFU/m³ before, during, and after manure removal, respectively. The airborne bacteria concentrations were significantly increased by the manure removal process. According to LEfSe analysis results, g_Escherichia_Shigella, s_Escherichia_coli, o_Enterobacteriales, f_Enterobacteriaceae could be suggested as biomarkers during manure removal. The dominant bacterial phyla in the layer house monitored were Proteobacteria, Bacteroidetes, Firmicutes, and genera were Pseudomonas, Escherichia-Shigella, Comamonas. The predominant potential pathogenic bacteria in the layer house were Pseudomonas, Escherichia, Enterobacter, and Acinetobacter.