In fish, the gut microbiome plays a crucial role in homeostasis and health and is affected by several organic and inorganic environmental contaminants. Amphidromous fish are sentinel species, particularly exposed to these stressors. We used whole metagenome sequencing to characterize the gut microbiome of wild European eels (Anguilla anguilla) at a juvenile stage captured from three sites with contrasted pollution levels in term of heavy metals and persistent organic pollutants. The objectives were to identify what parameters could alter the gut microbiome of this catadromous fish and to explore the potential use of microbiota as bioindicators of environment quality. We identified a total of 1079 microbial genera. Overall, gut microbiome was dominated by Proteobacteria, Firmicutes and Actinobacteria. Alpha and beta diversity were different amongst sites and could be explained by a reduced number of environmental and biological factors, specifically the relative abundance of fish preys in eels’ diet, PCB101, γHCH (lindane), transnonachlor and arsenic. Furthermore, we identified a series of indicator taxa with differential abundance between the three sites. Changes in the microbial communities in the gut caused by environmental pollutants were previously undocumented in European eels. Our results indicate that microbiota might represent another route by which pollutants affect the health of these aquatic sentinel organisms.

Estuaries, vital coastal ecosystems, face growing threats from industrialization. To understand the pace of sedimentary changes and heavy metal pollution at the anthropogenically altered and industrialized Nakdong River Estuary in South Korea, we used sediment coring to reconstruct environmental change. Estuarine dam construction in 1934 shifted the sedimentary system from sand to mud, coinciding with a post-1930s mercury increase due to coal burning. Mercury concentrations in other South Korean regions surged in the 1970s, indicating proximity to emission sources matters. However, most heavy metal levels (Cu, Cd, Zn, Ag) sharply rose in the 1960s and 1970s with regional industrialization. Modern heavy metal concentrations doubled pre-industrial levels, underscoring human activities as the primary driver of Nakdong Estuary environmental changes. This emphasizes the need for a balanced approach to development and environmental preservation.

The concentrations and isotopic compositions of carbon (C), copper (Cu), zinc (Zn), and lead (Pb) in coastal sediments were analyzed to identify potential pollution sources. High concentrations of total organic carbon (TOC) and metals were found close to cities and industrial areas. The isotopic compositions of C, Cu, Zn, and Pb tended to decrease as their concentrations increased. Bi-plots between δ65Cu and δ66Zn showed that the isotopic compositions in most coastal sediments, except sediments around a smelter, were similar to the isotopic compositions of road dust in urban and industrial areas of Korea. Our results suggest that heavy metal pollution in coastal sediments is greatly influenced by the pollution source, such that most metals originate from traffic and industrial activities in the urban environment. This analysis of multiple isotopes provides insights concerning the transport mechanisms and clarifies potential sources of metal contamination in coastal environments.