Molecular-level understanding of soil Cu speciation and distribution assists in management of Cu contamination in mining sites. In this study, one soil sample, collected from a mining site contaminated since 1950s, was characterized complementarily by multiple synchrotron-based bulk and spatially resolved techniques for the speciation and distribution of Cu as well as other related elements (Fe, Ca, Mn, K, Al, and Si). Bulk X-ray absorption near-edge structure (XANES) and extended X-ray absorption fine structure (EXAFS) spectroscopy revealed that soil Cu was predominantly associated with Fe oxides instead of soil organic matter. This agreed with the closest association of Cu to Fe by microscopic X-ray fluorescence (U-XRF) and scanning transmission X-ray microscopy (STXM) nanoanalysis, along with the non-occurrence of photoreduction of soil Cu(II) by quick Cu L₃,₂-edge XANES spectroscopy (Q-XANES) which often occurs when Cu organic complexes are present. Furthermore, bulk-EXAFS and STXM-coupled Fe L₃,₂-edge nano-XANES analysis revealed soil Cu adsorbed primarily to Fe(III) oxides by inner-sphere complexation. Additionally, Cu K-edge μ-XANES, L₃,₂-edge bulk-XANES, and successive Q-XANES results identified the presence of Cu₂S rather than radiation-damage artifacts dominant in certain microsites of the mining soil. This study demonstrates the great benefits in use of multiple combined synchrotron-based techniques for comprehensive understanding of Cu speciation in heterogeneous soil matrix, which facilitates our prediction of Cu reactivity and environmental fate in the mining site.

Birds have been used as bioindicators of pollution, such as toxic metals. Levels of pollutants in eggs are especially interesting, as developing birds are more sensitive to detrimental effects of pollutants than adults. Only very few studies have monitored intraspecific, large-scale variation in metal pollution across a species' breeding range. We studied large-scale geographic variation in metal levels in the eggs of a small passerine, the pied flycatcher (Ficedula hypoleuca), sampled from 15 populations across Europe. We measured 10 eggshell elements (As, Cd, Cr, Cu, Ni, Pb, Zn, Se, Sr, and Ca) and several shell characteristics (mass, thickness, porosity, and color). We found significant variation among populations in eggshell metal levels for all metals except copper. Eggshell lead, zinc, and chromium levels decreased from central Europe to the north, in line with the gradient in pollution levels over Europe, thus suggesting that eggshell can be used as an indicator of pollution levels. Eggshell lead levels were also correlated with soil lead levels and pH. Most of the metals were not correlated with eggshell characteristics, with the exception of shell mass, or with breeding success, which may suggest that birds can cope well with the current background exposure levels across Europe.

Sulfate-reducing microorganisms (SRM) have been thought to play a key role in mercury (Hg) methylation in anoxic environments. The current study examined the linkage between SRM abundance and diversity and contents of methylmercury (MeHg) in paddy soils collected from a historical Hg mining area in China. Soil profile samples were collected from four sites over a distance gradient downstream the Hg mining operation. Results showed that MeHg content in the soil of each site significantly decreased with the extending distance away from Hg mine. Soil MeHg content was correlated positively with abundance of SRM and the contents of organic matter (OM), NH₄⁺, SO₄²⁻, and Hg. The abundances of SRM based on dissimilatory (bi) sulfite reductase (dsrAB) gene at 0–40 cm depths were higher than those at 40–80 cm depth at all sites. The SRM community composition varied in the soils of different sampling sites following terminal restriction fragment length polymorphism (T-RFLP) and phylogenetic analyses, which appeared to be correlated with contents of MeHg, OM, NH₄⁺, and SO₄²⁻through canonical correspondence analysis. The dominant groups of SRM in the soils examined belonged to Deltaproteobacteria and some unknown SRM clusters that could have potential for Hg methylation. These results advance our understanding of the relationship between SRM and methylmercury concentration in paddy soil.

Gene expression data may be very promising for the classification of toxicant types, but the development and application of transcriptomic-based gene classifiers for environmental toxicological applications are lacking compared to the biomedical sciences. Also, simultaneous classification across a set of toxicant types has not been investigated extensively. In the present study, we determined the transcriptomic response to three types of ubiquitous toxicants exposure in two types of human cell lines (HepG2 and HL-60), which are useful in vitro human model for evaluation of toxic substances that may affect human hepatotoxicity (e.g., polycyclic aromatic hydrocarbon [PAH] and persistent organic pollutant [POP]) and human leukemic myelopoietic proliferation (e.g., volatile organic compound [VOC]). The findings demonstrate characteristic molecular signatures that facilitated discrimination and prediction of the toxicant type. To evaluate changes in gene expression levels after exposure to environmental toxicants, we utilized 18 chemical substances; nine PAH toxicants, six VOC toxicants, and three POP toxicants. Unsupervised gene expression analysis resulted in a characteristic molecular signature for each toxicant group, and combination analysis of two separate multi-classifications indicated 265 genes as surrogate markers for predicting each group of toxicants with 100 % accuracy. Our results suggest that these expression signatures can be used as predictable and discernible surrogate markers for detection and prediction of environmental toxicant exposure. Furthermore, this approach could easily be extended to screening for other types of environmental toxicants.

Monitored natural attenuation is widely accepted as a sustainable remediation method. However, methods providing proof of proceeding natural attenuation within the water-unsaturated (vadose) zone are still relying on proxies such as measurements of reactive and non-reactive gases, or sediment sampling and subsequent mineralisation assays, under artificial conditions in the laboratory. In particular, at field sites contaminated with hydrophobic compounds, e.g. crude oil spills, an in situ evaluation of natural attenuation is needed, because in situ methods are assumed to provide less bias than investigations applying either proxies for biodegradation or off-site microcosm experiments. In order to compare the current toolbox of methods with the recently developed in situ microcosms, incubations with direct push-sampled sediments from the vadose and the aquifer zones of a site contaminated with crude oil were carried out in conventional microcosms and in situ microcosms. The results demonstrate the applicability of the in situ microcosm approach also outside water-saturated aquifer conditions in the vadose zone. The sediment incubation experiments demonstrated turnover rates in a similar range (vadose, 4.7 mg/kg*day; aquifer, 6.4 mgₕₑₓₐdₑcₐₙₑ/kgₛₒᵢₗ/day) of hexadecane degradation in the vadose zone and the aquifer, although mediated by slightly different microbial communities according to the analysis of fatty acid patterns and amounts. Additional experiments had the task of evaluating the degradation potential for the branched-chain alkane pristane (2,6,10,14-tetramethylpentadecane). Although this compound is regarded to be hardly degradable in comparison to n-alkanes and is thus frequently used as a reference parameter for indexing the extent of biodegradation of crude oils, it could be shown to be degraded by means of the incubation experiments. Thus, the site had a high inherent potential for natural attenuation of crude oils both in the vadose zone and the aquifer.

The congener-specific concentrations of mono- to deca-chlorinated biphenyls (PC₁–₁₀B) in post-combustion zone flue gases from a laboratory-scale fluidized bed reactor were evaluated and correlated with a set of physicochemical properties and chlorine substitution descriptors. The objective was to identify parameters that affect post-combustion zone polychlorinated biphenyl (PCB) formation and interpreting observed correlations by using principal component analysis (PCA), and bidirectional orthogonal projections to latent structures (O2PLS). Both physicochemical variables and chlorine substitution descriptors were shown to have significant effects on the PCB congener distribution; however, the physicochemical descriptors were more influential in all-homologue models, whereas the chlorine substitution descriptors had a greater impact in single-homologue models, which suggests that PCB formation in general may be under thermodynamic control, whereas the distribution of isomers within homologues is more sensitive to chlorine substitution parameters. The EHOMO and ELUMO variables notably influenced both the PCA and the O2PLS models, which indicate that reactivity and polarization in the molecular structures of the PCBs is of importance.

Feral swine are estimated to annually cost hundreds of millions of dollars in economic loss to property and agriculture in the USA, while their ecological consequences remain largely unmeasured. Using submeter-accurate Global Positioning System technology over a multiyear project, we are quantifying in a novel way the spatial and temporal attributes of swine rooting damage within 587 ha of ecologically sensitive wetland plant communities at Avon Park Air Force Range in south-central Florida. We delineated damage polygons from 0.0023 to 4,335 m²and were able to document recurrent damage through time at most sites during each assessment. For each polygon, we also estimated the age of damage and assigned to it a severity index, qualities of the rooting in which we detected changes in proportions over time. Spatially explicit damage assessments at fine scales conducted over several years can assist land managers in determining effects of rooting on rare plant populations, and will allow investigators to hypothesize what factors are driving patterns of this disturbance across ecologically sensitive plant communities.

This paper presents the results obtained during the measurements campaign started in June 2012 and ended in November 2013 on the invaluable purple Codex Rossanensis, sixth century, one of the oldest surviving illuminated manuscripts of the New Testament. The tasks of the chemistry laboratory were to answer a variety of questions posed both by historians and restorers, concerning the materials used in a previous restoration, the composition of the pictorial palette and the different inks and to determine which colouring material had been applied to dye the parchment support. It was also requested to determine the state of preservation of the manuscript, as a result of its interactions with the environment in which the manuscript had been stored and the vicissitudes experienced during its life (fire, previous restoration, exhibition). The spectroscopic analyses performed by micro-Raman, micro-Fourier transform infrared and X-ray fluorescence allowed to fill a gap in the knowledge of the pictorial materials used in the Early Middle Ages. The pictorial palette, the inks, the dye applied to obtain the purple parchments, the support and the materials used in the previous restoration treatment executed in 1917–19 were fully characterised. Moreover, to the author’s knowledge, the article shows the first experimental evidence of the use of the elderberry lake in a sixth century-illuminated manuscript. The lake was characterised by Raman spectroscopy.

Growing common duckweed Lemna minor L. in diluted livestock wastewater is an alternative option for pollutants removal and consequently the accumulated duckweed biomass can be used for bioenergy production. However, the biomass accumulation can be inhibited by high level of ammonium (NH₄⁺) in non-diluted livestock wastewater and the mechanism of ammonium inhibition is not fully understood. In this study, the effect of high concentration of NH₄⁺on L. minor biomass accumulation was investigated using NH₄⁺as sole source of nitrogen (N). NH₄⁺-induced toxicity symptoms were observed when L. minor was exposed to high concentrations of ammonium nitrogen (NH₄⁺-N) after a 7-day cultivation. L. minor exposed to the NH₄⁺-N concentration of 840 mg l⁻¹exhibited reduced relative growth rate, contents of carbon (C) and photosynthetic pigments, and C/N ratio. Ammonium irons were inhibitory to the synthesis of photosynthetic pigments and caused C/N imbalance in L. minor. These symptoms could further cause premature senescence of the fronds, and restrain their reproduction, growth and biomass accumulation. L. minor could grow at NH₄⁺-N concentrations of 7–84 mg l⁻¹and the optimal NH₄⁺-N concentration was 28 mg l⁻¹.

Significant losses in harvested fruit can be directly attributable to decay fungi and quality deterioration. Hot water treatment (HWT) has been demonstrated to be an effective and economic environment-friendly approach for managing postharvest decay and maintaining fruit quality. In this study, the effects of HWT (45 °C for 10, 15, 20, and 25 min) on in vitro growth of Fusarium oxysporum, in vivo Fusarium rot, and natural decay of melon were investigated. HWT inhibited spore germination and germ tube elongation of F. oxysporum. Protein impairment and ATP consumption triggered by HWT contributed to the inhibitory effect. Results of in vivo studies showed that HWT effectively controlled Fusarium rot and natural decay of melon. Correspondingly, HWT induced a significant increase in content of total phenolic compounds and lignin of melon. These findings indicate that the effects of HWT on Fusarium rot may be associated with the direct fungal inhibition and the elicitation of defense responses in fruit. Importantly, HWT used in this study had beneficial effects on fruit quality as well. HWT may represent an effective non-chemical approach for management of postharvest Fusarium rot.