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Ex Situ conservation of potato [Solanum Section Petota (Solanaceae)] genetic resources in genebanks 全文
2020
Ellis, David | Salas, A. | Chavez, O. | Gómez, R. | Anglin, Noelle L.
Conserving the genetic diversity of potato is critical for the long-term future of potato improvement programs. Further, it is the social and ethical responsibility of the present generation to ensure future generations have the same opportunities to use, exploit, and benefit from the genetic diversity that exists today. Genebanks and the ex situ conservation of potato genetic resources are the only way to ensure this happens; in situ conservation plays a complementary role, but it can never ensure that the vast diversity that exists on earth today is still there for use in the future. Material in ex situ genebanks not only serve as a reservoir of ready-to-use genetic material when needed but also provide invaluable tools for research now and in the future of cultivated potato and its wild relatives.
显示更多 [+] 显示较少 [-]Genetic Diversity of Potato Based on Random Amplified Polymorphic DNA and Simple Sequence Repeat Marker 全文
2020
Sapto Nugroho Hadi | Siti Nurchasanah
Various potato clones are cultivated by farmers in Banjarnegara and Wonosobo, Central Java, Indonesia such as MZ, NH1, NH2, Vega, Gareta, Granola, Bliss, Merah (Red Potato), Ungu (Purple Potato), Klon_17 (K17), Local Dieng, Margahayu, and X. This encourages the importance of genetic diversity and genetic similarities. This study aimed to analyze genetic diversity and genetic similarities between 13 accessions of potatoes based on seven Random Amplified Polymorphic DNA (RAPD) primers and nine pairs of Simple Sequence Repeat Marker (SSR) primers. The results showed that RAPD and SSR primers could be used to analyze genetic diversity and genetic similarities of 13 potatoes accessions from Banjarnegara and Wonosobo. The PLP value was 80.9% in the RAPD primer and 65.41% in the SSR primer. Four RAPD primers were informative based on PIC value: OPG 08, OPM 19, OPP 13, and OPX 04. Three SSR primer were informative: STM 2005, RGH- SSR 8, and StI 035. Genetic similarities presented by Phylogenetic tree analysis resulted in two main clusters. The first cluster consisted of Granola, MZ, Ungu (Purple potato), Merah (Red Potato), Local Dieng, Margahayu, Gareta, Vega, NH2, NH1, Klon_17 (K17), and Bliss. The second cluster consisted of X. Granola and MZ having a high genetic similarity with a genetic distance of 0.07 and 0.132. Meanwhile, K17 and X had a low genetic similarity with a genetic distance of 0.31 and 0.987.
显示更多 [+] 显示较少 [-]Broadening Genetic Diversity of the Japanese Potato Gene Pool 全文
2020
Hosaka, Kazuyoshi | Sanetomo, Rena
Newly developed potato varieties in Japan have never replaced existing old varieties, indicating genetic poverty in our gene pool. To broaden the genetic diversity, Andean primitive cultivated potatoes (Andigena) were used to create parental clones. A total of 184 Andigena accessions and 10 tetraploid Solanum tarijense-Andigena hybrid clones were crossed with a breeding clone 10H17. From 6939 F₁ hybrid clones, 287 were selected as long-day-adapted F₁ clones. From progeny evaluation using these as pollen parents crossed with Atlantic, 95 male-fertile and high-yielding F₁ clones were selected (PGEL clones). The genetic relationship was evaluated using 17,947 single nucleotide polymorphism (SNP) markers, which disclosed their distinctiveness, with larger mean Euclidean distances between PGEL clones and Japanese, foreign, or all tetraploid varieties (48.0, 49.9 or 49.4, respectively) than between Japanese and foreign varieties (47.2). Thus, these PGEL clones can be used to expand genetic diversity in Japanese potato breeding populations.
显示更多 [+] 显示较少 [-]Assessing Genetic Diversity of Three Species of Potato Tuber Moths (Gelechiidae, Lepidoptera) in the Ecuadorian Highlands 全文
2020
Fu, Z. | Castillo Carrillo, C.I. | Rasheed, Awais | Asaquibay, C. | Aucancela, R. | Camacho, J. | López, V. | Quimbiamba, V. | Yumisaca, F. | Panchi, N. | Velasco, C.
Three species of potato tuber moths, Tecia solanivora Povolny, Symmetrischema tangolias Gyen, and Phthorimaea operculella Zeller (all Lepidoptera: Gelechiidae), attack potato plants in the highlands of Ecuador and cause great economic losses. To understand their ecology and to develop precise integrated pest management strategies, a description of the molecular identification of each species and genetic diversity within populations is needed. In this study, we assessed the genetic diversity of a total of 112 moth samples of these 3 distinct species. Samples were collected from the 4 central provinces (Bolivar, Chimborazo, Cotopaxi, and Tungurahua) in the Ecuadorian highlands, where potato is a major crop for food security. Using polymerase chain reaction (PCR) and Sanger sequencing, we compared mitochondrial gene sequences among conspecific moth samples. Each of the 3 species exhibited different patterns regarding genetic diversity; more than 1 haplotype was present in P. operculella and S. tangolias, whereas all T. solanivora samples were found to be genetically identical. This initial effort of molecular characterization of the potato tuber moths will facilitate identifying incursion and potential migration route of Gelechiidae species as well as prevention of the pest outbreaks.
显示更多 [+] 显示较少 [-]Assessing Genetic Diversity of Three Species of Potato Tuber Moths (Gelechiidae, Lepidoptera) in the Ecuadorian Highlands 全文
2020
Assessing Genetic Diversity of Three Species of Potato Tuber Moths (Gelechiidae, Lepidoptera) in the Ecuadorian Highlands 全文
2020
Three species of potato tuber moths, Tecia solanivora Povolny, Symmetrischema tangolias Gyen, and Phthorimaea operculella Zeller (all Lepidoptera: Gelechiidae), attack potato plants in the highlands of Ecuador and cause great economic losses. To understand their ecology and to develop precise integrated pest management strategies, a description of the molecular identification of each species and genetic diversity within populations is needed. In this study, we assessed the genetic diversity of a total of 112 moth samples of these 3 distinct species. Samples were collected from the 4 central provinces (Bolívar, Chimborazo, Cotopaxi, and Tungurahua) in the Ecuadorian highlands, where potato is a major crop for food security. Using polymerase chain reaction (PCR) and Sanger sequencing, we compared mitochondrial gene sequences among conspecific moth samples. Each of the 3 species exhibited different patterns regarding genetic diversity; more than 1 haplotype was present in P. operculella and S. tangolias, whereas all T. solanivora samples were found to be genetically identical. This initial effort of molecular characterization of the potato tuber moths will facilitate identifying incursion and potential migration route of Gelechiidae species as well as prevention of the pest outbreaks.
显示更多 [+] 显示较少 [-]Investigation of Streptomycesscabies Causing Potato Scab by Various Detection Techniques, Its Pathogenicity and Determination of Host-Disease Resistance in Potato Germplasm 全文
2020
Ismail, Sohaib | Jiang, Bo | Nasimi, Zohreh | Inam-ul-Haq, M | Yamamoto, Naoki | Danso Ofori, Andrews | Shah, Nawab | Arshad, Muḥammad | Abbas, Kumail | Zheng, Aiping
Investigation of Streptomycesscabies Causing Potato Scab by Various Detection Techniques, Its Pathogenicity and Determination of Host-Disease Resistance in Potato Germplasm 全文
2020
Ismail, Sohaib | Jiang, Bo | Nasimi, Zohreh | Inam-ul-Haq, M | Yamamoto, Naoki | Danso Ofori, Andrews | Shah, Nawab | Arshad, Muḥammad | Abbas, Kumail | Zheng, Aiping
Streptomyces scabies is a Gram-positive bacterial pathogen that causes common scab disease to several crops, particularly in the potato. It is a soil borne pathogen, a very devastating scab pathogen and difficult to manage in the field. Streptomyces has several species that cause common scab such as S. scabiei, S. acidiscabies, S. europaeiscabiei, S. luridiscabiei, S. niveiscabiei, S. puniciscabiei, S. reticuliscabiei, S. stelliscabiei, S. turgidiscabies, S. ipomoeae. Common scab disease harmfully affects potato economic and market value due to the presence of black spots on the tuber. Owing to its genetic diversity and pathogenicity, the determination of pathogen presence in potato fields is still challenging. In this study, S. scabies genetic diversity was measured by surveying five potato-growing areas of Pakistan during the growing season 2019. A total of 50 Streptomyces isolates, including S. scabies, S. acidiscabies, S. griseoflavus were isolated and identified based on morphologic, biochemical and molecular analysis. Virulent confirmation assays confirmed ten virulent strains of Streptomyces spp. On the potato cultivars Cardinal and Santee. Among the Streptomyces species, S. scabies showed the highest scab index, followed by S. acidiscabies and S. griseoflavus by exhibiting the scab-like lesions on potato tubers. Ten potato cultivars were screened against these virulent isolates of Streptomyces. The Faisalabad white variety showed the highest scab index followed By Cardinal, Tourag, Kuroda, Santee, Lady Rosetta, Asterix, Diamant, Faisalabad red and Sadaf. Moreover, genetic diversity and pathogenicity of Streptomyces spp. on potato tubers were also likely diverse in different geographical regions and also potato cultivars. This study represents a contribution to understanding the local interaction between potatoes and Streptomyces spp. in Pakistan. It will aid in supporting a solution for the management of this pathogen around the world.
显示更多 [+] 显示较少 [-]Investigation of Streptomyces scabies Causing Potato Scab by Various Detection Techniques, Its Pathogenicity and Determination of Host-Disease Resistance in Potato Germplasm 全文
2020
Sohaib Ismail | Bo Jiang | Zohreh Nasimi | M. Inam-ul-Haq | Naoki Yamamoto | Andrews Danso Ofori | Nawab Khan | Muhammad Arshad | Kumail Abbas | Aiping Zheng
Streptomyces scabies is a Gram-positive bacterial pathogen that causes common scab disease to several crops, particularly in the potato. It is a soil borne pathogen, a very devastating scab pathogen and difficult to manage in the field. Streptomyces has several species that cause common scab such as S. scabiei, S. acidiscabies, S. europaeiscabiei, S. luridiscabiei, S. niveiscabiei, S. puniciscabiei, S. reticuliscabiei, S. stelliscabiei, S. turgidiscabies, S. ipomoeae. Common scab disease harmfully affects potato economic and market value due to the presence of black spots on the tuber. Owing to its genetic diversity and pathogenicity, the determination of pathogen presence in potato fields is still challenging. In this study, S. scabies genetic diversity was measured by surveying five potato-growing areas of Pakistan during the growing season 2019. A total of 50 Streptomyces isolates, including S. scabies, S. acidiscabies, S. griseoflavus were isolated and identified based on morphologic, biochemical and molecular analysis. Virulent confirmation assays confirmed ten virulent strains of Streptomyces spp. On the potato cultivars Cardinal and Santee. Among the Streptomyces species, S. scabies showed the highest scab index, followed by S. acidiscabies and S. griseoflavus by exhibiting the scab-like lesions on potato tubers. Ten potato cultivars were screened against these virulent isolates of Streptomyces. The Faisalabad white variety showed the highest scab index followed By Cardinal, Tourag, Kuroda, Santee, Lady Rosetta, Asterix, Diamant, Faisalabad red and Sadaf. Moreover, genetic diversity and pathogenicity of Streptomyces spp. on potato tubers were also likely diverse in different geographical regions and also potato cultivars. This study represents a contribution to understanding the local interaction between potatoes and Streptomyces spp. in Pakistan. It will aid in supporting a solution for the management of this pathogen around the world.
显示更多 [+] 显示较少 [-]Simple Sequence Repeat-Based Genetic Diversity and Analysis of Molecular Variance among on-Farm Native Potato Landraces from the Influence Zone of Camisea Gas Project, Northern Ayacucho, Peru 全文
2020
De la Cruz, Germán | Miranda, Tomás Yuret | Blas, Raúl Humberto | Neyra, Edgar | Orjeda, Gisella
The Andean native potato is an important food security crop and constitutes a gene pool for potato-breeding. To establish the current state of the native potatoes diversity in the influence zone of the Camisea Gas Project, North Ayacucho, Peru, landraces (n = 144) were collected. Three sampling populations (Anco, Chungui and Ticllas) were resolved using 10 simple sequence repeats (SSRs) markers that amplified 67 polymorphic alleles. Principal component, correspondence and cluster analysis revealed a minimum set of six SSRs to achieve DNA fingerprinting and cost-effective genetic diversity analysis. Analysis of molecular variance (AMOVA), average fixation index (FST = 0.279), and genetic distance index (SB) indicated that the genetic diversity of the native potatoes is high at the intra- and inter-population levels, and each of the three sampling populations constituted closed populations. The three populations were genetically distinct and contained unique genotypes and exclusive alleles. Misidentified native potatoes (10.41%) were found.
显示更多 [+] 显示较少 [-]Detection of adaptive genetic diversity in wild potato populations and its implications in conservation of potato germplasm 全文
2020
del Rio, Alfonso H. | Bamberg, John B.
A better understanding on how genetic diversity is structured at natural habitats can be helpful for exploration and acquisition of plant germplasm. Historically, studies have relied on DNA markers to elucidate potato genetic diversity. Current advances in genomics are broadening applications allowing the identification of markers linked to genomic regions under selection. Those markers, known as adaptive markers, unlock additional ways to value and organize germplasm diversity. For example, conservation priorities could be given to germplasm units containing markers associated to unique geographic identity, and/or linked to traits of tolerance to abiotic stresses. This study investigated if adaptive marker loci were possible to be identified in a large AFLP marker dataset of ninety-four populations of the wild potato species S. fendleri. These populations originated from six different mountain ranges in southern Arizona, USA. A total of 2094 polymorphic AFLP markers were used to conduct genetic diversity analyses of populations and mountain ranges. Adaptive markers were detected using Bayesian methods which distinguished marker loci departing significantly from frequencies expected under neutral models of genetic differentiation. This identified 16 AFLP loci that were considered to be adaptive. To contrast diversity parameters generated with each set of markers, analyses that included all the 2094 AFLP markers, and only the 16 adaptive markers were conducted. The results showed that both were efficient for establishing genetic associations among populations and mountain ranges. However, adaptive markers were better on revealing geographic patterns and identity which would suggest these markers were linked to selection at the natural sites. An additional test to determine if adaptive markers associated to climate variables found two loci associated to specific climate variables in populations from different regions but sharing similar environmental structure. The distribution of adaptive markers among populations revealed that only two were needed to build a core subset able to keep all the markers. This preliminary assessment shows that adaptive genetic diversity could offer an additional way to measure diversity in potato germplasm and to set up options for conservation and research.
显示更多 [+] 显示较少 [-]Composition of the collection of primitive cultivated species within the Solanum L. section Petota Dumort. and contemporary trends in their research 全文
2020
Rogozina, E. V. | Gurina, A. A.
Composition of the collection of primitive cultivated species within the Solanum L. section Petota Dumort. and contemporary trends in their research 全文
2020
Rogozina, E. V. | Gurina, A. A.
The diversity of potato genetic resources in the VIR genebank harbors one of the world’s first collections of primitive cultivated species. These accessions are native potato varieties cultivated by the indigenous population of South America. The oldest accessions in the collection are traced back to 1927. Approximately one fifth of the collection (106 accessions out of 573) is the unique material procured by VIR’s collecting missions to Bolivia, Colombia, Ecuador, and Peru. According to S. Bukasov’s potato classification, the diversity of South American highland potatoes explored by VIR’s collectors belongs to spp. Solanum ajanhuiri Juz. et Buk., S. × chaucha Juz. et Buk., S. mammilliferum Juz. et Buk., S. phureja Juz. et Buk., S. rybinii Juz. et Buk., S. goniocalyx Juz. et Buk., S. stenotomum Juz. et Buk., S. tenuifilamentum Juz. et Buk., S.× juzepczukii Buk., and S. × curtilobum Juz. et Buk. Within this group of species, S. × ajanhuiri, S. phureja and S. stenostomum are the closest in their characteristics to ancient domesticated forms of tuber-bearing Solanum spp. This publication is an analytical review of the current composition of the primitive cultivated potato species collection and the results of its earlier studies. Ecogeographic descriptions of the sites native for cultivated potatoes and information on the sources of the accessions are presented. A large-scale evaluation of primitive cultivated potato accessions by a set of characters, carried out in field and laboratory experiments, uncovers their breeding potential and serves as the primary information platform for further indepth research. Studying S. phureja and closely related cultivated potato species is important for finding solutions of fundamental problems in plant biology. The data arrays accumulated today would facilitate targeted selection among accessions to identify most promising ones for molecular genetic studies into the gene pool diversity of potato species.
显示更多 [+] 显示较少 [-]Composition of the collection of primitive cultivated species within the Solanum L. section Petota Dumort. and contemporary trends in their research 全文
2020
E. V. Rogozina | A. A. Gurina
The diversity of potato genetic resources in the VIR genebank harbors one of the world’s first collections of primitive cultivated species. These accessions are native potato varieties cultivated by the indigenous population of South America. The oldest accessions in the collection are traced back to 1927. Approximately one fifth of the collection (106 accessions out of 573) is the unique material procured by VIR’s collecting missions to Bolivia, Colombia, Ecuador, and Peru. According to S. Bukasov’s potato classification, the diversity of South American highland potatoes explored by VIR’s collectors belongs to spp. Solanum ajanhuiri Juz. et Buk., S. × chaucha Juz. et Buk., S. mammilliferum Juz. et Buk., S. phureja Juz. et Buk., S. rybinii Juz. et Buk., S. goniocalyx Juz. et Buk., S. stenotomum Juz. et Buk., S. tenuifilamentum Juz. et Buk., S.× juzepczukii Buk., and S. × curtilobum Juz. et Buk. Within this group of species, S. × ajanhuiri, S. phureja and S. stenostomum are the closest in their characteristics to ancient domesticated forms of tuber-bearing Solanum spp. This publication is an analytical review of the current composition of the primitive cultivated potato species collection and the results of its earlier studies. Ecogeographic descriptions of the sites native for cultivated potatoes and information on the sources of the accessions are presented. A large-scale evaluation of primitive cultivated potato accessions by a set of characters, carried out in field and laboratory experiments, uncovers their breeding potential and serves as the primary information platform for further indepth research. Studying S. phureja and closely related cultivated potato species is important for finding solutions of fundamental problems in plant biology. The data arrays accumulated today would facilitate targeted selection among accessions to identify most promising ones for molecular genetic studies into the gene pool diversity of potato species.
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