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Thresholds Value of Soil Trace Elements for the Suitability of Eucalyptus (The Case Study of Guadiamar Green Corridor)
2023
Blanco-Velázquez, Francisco José | Anaya-Romero, María | Pino-Mejías, Rafael
The development of suitability species models look for the availability to growth in a study area. These models can be used for different targets. In this research, a suitability model of Eucalyptus has been developed to soils contaminated by trace elements management. Guadiamar Green Corridor has been selected due to the huge data available regarding trace elements, forestry species and so on. Logistic regression (LR) and Random Forest (RF), as popular machine learning model, were applied in a geodatabase from Guadiamar Green Corridor with more of 20 years of data. This database is composed by soil physical and chemical variables, climate (temperature min and max, annual precipitation), forestry species. The results show the poor performance of LR and RF applied directly over the unbalanced training set. However, when Up-sampling or SMOTE are applied, both procedures improve its sensitivity, however, RF show more improve that LR. The methodology applied can help to determine the potential distribution of Eucalyptus in similar Mediterranean areas and extended to different areas according to Soil, Climate and Trace Elements data. Finally, the models developed under this research work can be used to reduce human and environmental health by trace elements taking into account local conditions but also climate change scenarios.
Show more [+] Less [-]A Review of the Application of Machine Learning and Geospatial Analysis Methods in Air Pollution Prediction
2022
Zhalehdoost, Alireza | Taleai, Mohammad
During the past years, air quality has become an important global issue, due to its impact on people's lives and the environment, and has caused severe problems for humans. As a prevention to effectively control air pollution, forecasting models have been developed as a base for decision-makers and urban managers during the past decades. In general, these methods can be divided into three classes: statistical methods, machine learning methods and hybrid methods. This study's primary intent is to supply an overview of air pollution prediction techniques in urban areas and their advantages and disadvantages. A comparison has also been made between the methods in terms of error assessment and the use of geospatial information systems (GIS). In addition, several approaches were applied to actual data, and the findings were compared to those acquired from previous published literatures. The results showed that forecasting using machine learning and hybrid methods has provided better results. It has also been demonstrated that GIS can improve the results of the forecasting methods.
Show more [+] Less [-]Associations between persistent organic pollutants and endometriosis: A multipollutant assessment using machine learning algorithms
2020
Matta, Komodo | Vigneau, Evelyne | Cariou, Véronique | Mouret, Delphine | Ploteau, Stéphane | Le Bizec, Bruno | Antignac, Jean-Philippe | Cano-Sancho, Germán | Laboratoire d'étude des Résidus et Contaminants dans les Aliments (LABERCA) ; École nationale vétérinaire, agroalimentaire et de l'alimentation Nantes-Atlantique (ONIRIS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE) | Statistique, Sensométrie et Chimiométrie (StatSC) ; École nationale vétérinaire, agroalimentaire et de l'alimentation Nantes-Atlantique (ONIRIS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE) | Centre hospitalier universitaire de Nantes (CHU Nantes)
International audience
Show more [+] Less [-]Versatile in silico modeling of XAD-air partition coefficients for POPs based on abraham descriptor and temperature
2022
Tao, Cuicui | Chen, Ying | Tao, Tianyun | Cao, Zaizhi | Chen, Wenxuan | Zhu, Tengyi
The concentration of persistent organic pollutants (POPs) makes remarkable difference to environmental fate. In the field of passive sampling, the partition coefficients between polystyrene-divinylbenzene resin (XAD) and air (i.e., KXAD₋A) are indispensable to obtain POPs concentration, and the KXAD₋A is generally thought to be governed by temperature and molecular structure of POPs. However, experimental determination of KXAD₋A is unrealistic for countless and novel chemicals. Herein, the Abraham solute descriptors of poly parameter linear free energy relationship (pp-LFER) and temperature were utilized to develop models, namely pp-LFER-T, for predicting KXAD₋A values. Two linear (MLR and LASSO) and four nonlinear (ANN, SVM, kNN and RF) machine learning algorithms were employed to develop models based on a data set of 307 sample points. For the aforementioned six models, R²ₐdⱼ and Q²ₑₓₜ were both beyond 0.90, indicating distinguished goodness-of-fit and robust generalization ability. By comparing the established models, the best model was observed as the RF model with R²ₐdⱼ = 0.991, Q²ₑₓₜ = 0.935, RMSEₜᵣₐ = 0.271 and RMSEₑₓₜ = 0.868. The mechanism interpretation revealed that the temperature, size of molecules and dipole-type interactions were the predominant factors affecting KXAD₋A values. Concurrently, the developed models with the broad applicability domain provide available tools to fill the experimental data gap for untested chemicals. In addition, the developed models were helpful to preliminarily evaluate the environmental ecological risk and understand the adsorption behavior of POPs between XAD membrane and air.
Show more [+] Less [-]Critical features identification for chemical chronic toxicity based on mechanistic forecast models
2022
Wang, Xiaoqing | Li, Fei | Chen, Jingwen | Teng, Yuefa | Ji, Chenglong | Wu, Huifeng
Facing billions of tons of pollutants entering the ocean each year, aquatic toxicity is becoming a crucial endpoint for evaluating chemical adverse effects on ecosystems. Notably, huge amount of toxic chemicals at environmental relevant doses can cause potential adverse effects. However, chronic aquatic toxicity effects of chemicals are much scarcer, especially at population level. Rotifers are highly sensitive to toxicants even at chronic low-doses and their communities are usually considered as effective indicators for assessing the status of aquatic ecosystems. Therefore, the no observed effect concentration (NOEC) for population abundance of rotifers were selected as endpoints to develop machine learning models for the prediction of chemical aquatic chronic toxicity. In this study, forty-eight binary models were built by eight types of chemical descriptors combined with six machine learning algorithms. The best binary model was 1D & 2D molecular descriptors – random trees model (RT) with high balanced accuracy (BA) (0.83 for training and 0.83 for validation set), and Matthews correlation coefficient (MCC) (0.72 for training set and 0.67 for validation set). Moreover, the optimal model identified the primary factors (SpMAD_Dzp, AMW, MATS2v) and filtered out three high alerting substructures [c1cc(Cl)cc1, CNCO, CCOP(=S)(OCC)O] influencing the chronic aquatic toxicity. These results showed that the compounds with low molecular volume, high polarity and molecular weight could contribute to adverse effects on rotifers, facilitating the deeper understanding of chronic toxicity mechanisms. In addition, forecast models had better performances than the common models embedded into ECOSAR software. This study provided insights into structural features responsible for the toxicity of different groups of chemicals and thereby allowed for the rational design of green and safer alternatives.
Show more [+] Less [-]A remote sensing framework to map potential toxic elements in agricultural soils in the humid tropics
2022
de Sousa Mendes, Wanderson | Demattê, José A.M. | de Resende, Maria Eduarda B. | Chimelo Ruiz, Luiz Fernando | César de Mello, Danilo | Fim Rosas, Jorge Tadeu | Quiñonez Silvero, Nélida Elizabet | Ferracciú Alleoni, Luís Reynaldo | Colzato, Marina | Rosin, Nícolas Augusto | Campos, Lucas Rabelo
Soil contamination by potentially toxic elements (PTEs) is one of the greatest threats to environmental degradation. Knowing where PTEs accumulated in soil can mitigate their adverse effects on plants, animals, and human health. We evaluated the potential of using long-term remote sensing images that reveal the bare soils, to detect and map PTEs in agricultural fields. In this study, 360 soil samples were collected at the superficial layer (0–20 cm) in a 2574 km² agricultural area located in São Paulo State, Brazil. We tested the Soil Synthetic Image (SYSI) using Landsat TM/ETM/ETM+, Landsat OLI, and Sentinel 2 images. The three products have different spectral, temporal, and spatial resolutions. The time series multispectral images were used to reveal areas with bare soil and their spectra were used as predictors of soil chromium, iron, nickel, and zinc contents. We observed a strong linear relationship (−0.26 > r > −0.62) between the selected PTEs and the near infrared (NIR) and shortwave infrared (SWIR) bands of Sentinel (ensemble of 4 years of data), Landsat TM (35 years data), and Landsat OLI (4 years data). The clearest discrimination of soil PTEs was obtained from SYSI using a long term Landsat 5 collection over 35 years. Satellite data could efficiently detect the contents of PTEs in soils due to their relation with soil attributes and parent materials. Therefore, distinct satellite sensors could map the PTEs on tropics and assist in understanding their spatial dynamics and environmental effects.
Show more [+] Less [-]Machine learning predicts ecological risks of nanoparticles to soil microbial communities
2022
Xu, Nuohan | Kang, Jian | Ye, Yangqing | Zhang, Qi | Ke, Mingjing | Wang, Yufei | Zhang, Zhenyan | Lu, Tao | Peijnenburg, W.J.G.M. | Josep Penuelas, | Bao, Guanjun | Qian, Haifeng
With the rapid development of nanotechnology in agriculture, there is increasing urgency to assess the impacts of nanoparticles (NPs) on the soil environment. This study merged raw high-throughput sequencing (HTS) data sets generated from 365 soil samples to reveal the potential ecological effects of NPs on soil microbial community by means of metadata analysis and machine learning methods. Metadata analysis showed that treatment with nanoparticles did not have a significant impact on the alpha diversity of the microbial community, but significantly altered the beta diversity. Unfortunately, the abundance of several beneficial bacteria, such as Dyella, Methylophilus, Streptomyces, which promote the growth of plants, and improve pathogenic resistance, was reduced under the addition of synthetic nanoparticles. Furthermore, metadata demonstrated that nanoparticles treatment weakened the biosynthesis ability of cofactors, carriers, and vitamins, and enhanced the degradation ability of aromatic compounds, amino acids, etc. This is unfavorable for the performance of soil functions. Besides the soil heterogeneity, machine learning uncovered that a) the exposure time of nanoparticles was the most important factor to reshape the soil microbial community, and b) long-term exposure decreased the diversity of microbial community and the abundance of beneficial bacteria. This study is the first to use a machine learning model and metadata analysis to investigate the relationship between the properties of nanoparticles and the hazards to the soil microbial community from a macro perspective. This guides the rational use of nanoparticles for which the impacts on soil microbiota are minimized.
Show more [+] Less [-]Long-term trends of atmospheric hot-and-polluted episodes (HPE) and the public health implications in the Pearl River Delta region of China
2022
Nduka, Ifeanyichukwu C. | Huang, Tao | Li, Zhiyuan | Yang, Yuanjian | Yim, Steve H.L.
Air pollution and extreme heat have been responsible for more than a million deaths in China every year, especially in densely urbanized regions. While previous studies intensively evaluated air pollution episodes and extreme heat events, a limited number of studies comprehensively assessed atmospheric hot-and-polluted-episodes (HPE) – an episode with simultaneously high levels of air pollution and temperature – which have potential adverse synergic impacts on human health. This study focused on the Pearl River Delta (PRD) region of China due to its high temperature in summer and poor air quality throughout a year. We employed geostatistical downscaling to model meteorology at a spatial resolution of 1 km, and applied a machine learning algorithm (XGBoost) to estimate a high-resolution (1 km) daily concentration of particulate matter with an aerodynamic diameter ≤2.5 μm (PM₂.₅) and ozone (O₃) for June to October over 20 years (2000–2019). Our results indicate an increasing trend (∼50%) in the frequency of HPE occurrence in the first decade (2000–2010). Conversely, the annual frequency of HPE occurrence reduced (16.7%), but its intensity increased during the second decade (2010–2019). The northern cities in the PRD region had higher levels of PM₂.₅ and O₃ than their southern counterparts. During HPEs, regional daily PM₂.₅ exceeded the World Health Organization (WHO) and Chinese guideline levels by 75% and 25%, respectively, while the O₃ exceeded the WHO O₃ standard by up to 69%. Overall, 567,063 (95% confidence interval (CI): 510,357–623,770) and 52,231 (95%CI: 26,116–78,346) excessive deaths were respectively attributable to exposure to PM₂.₅ and O₃ in the PRD region. Our findings imply the necessity and urgency to formulate co-benefit policies to mitigate the region's air pollution and heat problems.
Show more [+] Less [-]Metagenomic insights into the antibiotic resistome of mangrove sediments and their association to socioeconomic status
2021
Imchen, Madangchanok | Kumavath, Ranjith
Mangrove sediments are prone to anthropogenic activities that could enrich antibiotics resistance genes (ARGs). The emergence and dissemination of ARGs are of serious concern to public health worldwide. Therefore, a comprehensive resistome analysis of global mangrove sediment is of paramount importance. In this study, we have implemented a deep machine learning approach to analyze the resistome of mangrove sediments from Brazil, China, Saudi Arabia, India, and Malaysia. Geography (RANOSIM = 39.26%; p < 0.005) as well as human intervention (RANOSIM = 16.92%; p < 0.005) influenced the ARG diversity. ARG diversity was also inversely correlated to the human development index (HDI) of the host country (R = −0.53; p < 0.05) rather than antibiotics consumption (p > 0.05). Several genes including multidrug efflux pumps were significantly (p < 0.05) enriched in the sites with human intervention. Resistome was consistently dominated by rpoB2 (19.26 ± 0.01%), multidrug ABC transporter (10.40 ± 0.23%), macB (8.84 ± 0.36n%), tetA (4.13 ± 0.35%), mexF (3.26 ± 0.19%), CpxR (2.93 ± 0.2%), bcrA (2.38 ± 0.24%), acrB (2.37 ± 0.18%), mexW (2.19 ± 0.17%), and vanR (1.99 ± 0.11%). Besides, mobile ARGs such as vanA, tet(48), mcr, and tetX were also detected in the mangrove sediments. Comparative analysis against terrestrial and ocean resistomes showed that the ocean ecosystem harbored the lowest ARG diversity (Chao1 = 71.12) followed by mangroves (Chao1 = 258.07) and terrestrial ecosystem (Chao1 = 294.07). ARG subtypes such as abeS and qacG were detected exclusively in ocean datasets. Likewise, rpoB2, multidrug ABC transporter, and macB, detected in mangrove and terrestrial datasets, were not detected in the ocean datasets. This study shows that the socioeconomic factors strongly determine the antibiotic resistome in the mangrove. Direct anthropogenic intervention in the mangrove environment also enriches antibiotic resistome.
Show more [+] Less [-]Screening of potential oestrogen receptor α agonists in pesticides via in silico, in vitro and in vivo methods
2021
Shen, Chao | Zhu, Kongyang | Ruan, Jinpeng | Li, Jialing | Wang, Yi | Zhao, Meirong | He, Chengyong | Zuo, Zhenghong
In modern agricultural management, the use of pesticides is indispensable. Due to their massive use worldwide, pesticides represent a latent risk to both humans and the environment. In the present study, 1056 frequently used pesticides were screened for oestrogen receptor (ER) agonistic activity by using in silico methods. We found that 72 and 47 pesticides potentially have ER agonistic activity by the machine learning methods random forest (RF) and deep neural network (DNN), respectively. Among endocrine-disrupting chemicals (EDCs), 14 have been reported as EDCs or ER agonists by previous studies. We selected 3 reported and 7 previously unreported pesticides from 76 potential ER agonists to further assess ERα agonistic activity. All 10 selected pesticides exhibited ERα agonistic activity in human cells or zebrafish. In the dual-luciferase reporter gene assays, six pesticides exhibited ERα agonistic activity. Additionally, nine pesticides could induce mRNA expression of the pS2 and NRF1 genes in MCF-7 cells, and seven pesticides could induce mRNA expression of the vtg1 and vtg2 genes in zebrafish. Importantly, the remaining 48 out of 76 potential ER agonists, none of which have previously been reported to have endocrine-disrupting effects or oestrogenic activity, should be of great concern. Our screening results can inform environmental protection goals and play an important role in environmental protection and early warnings to human health.
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