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Oxidative stress and brain mitochondria swelling induced by endosulfan and protective role of quercetin in rat Full text
2015
Lakroun, Zhoura | Kebieche, Mohamed | Lahouel, Asma | Zama, Djamila | Desor, Frederique | Soulimani, Rachid | Université Frères Mentouri – Constantine 1 = Constantine 1 – Frères Mentouri University (UMC) | Université Mohammed Seddik Benyahia [Jijel] | University of Jijel (UMSBJ) | Unité de Recherches Animal et Fonctionnalités des Produits Animaux (URAFPA) ; Institut National de la Recherche Agronomique (INRA)-Université de Lorraine (UL)
Oxidative stress and brain mitochondria swelling induced by endosulfan and protective role of quercetin in rat Full text
2015
Lakroun, Zhoura | Kebieche, Mohamed | Lahouel, Asma | Zama, Djamila | Desor, Frederique | Soulimani, Rachid | Université Frères Mentouri – Constantine 1 = Constantine 1 – Frères Mentouri University (UMC) | Université Mohammed Seddik Benyahia [Jijel] | University of Jijel (UMSBJ) | Unité de Recherches Animal et Fonctionnalités des Produits Animaux (URAFPA) ; Institut National de la Recherche Agronomique (INRA)-Université de Lorraine (UL)
International audience | The neurological damages resulted by endosulfan poisoning is not completely elucidated, especially in cellular organelles such as mitochondria. In the present study, the pro-oxidant effect of endosulfan on brain mitochondria was first investigated. Gavages of endosulfan into rats at the dose of 2 mg/kg induced oxidative stress in this organelle since it provokes a significant reduction of catalase (CAT), superoxide dismutase (SOD), and glutathione (GSH) level. In addition, a significant increase in mitochondria swelling and malondialdehyde (MDA) levels were observed in neuronal mitochondria, indicating clearly an intense peroxidation within mitochondria. Second, the protective effect of quercetin (QE) (10 mg/kg) against endosulfan-induced oxidative stress in mitochondria was also assessed. Indeed, the pretreatment of rats with QE protects brain mitochondria from oxidative stress, lipid peroxidation, and mitochondria swelling induced by endosulfan. The activities of antioxidant enzymes and the mitochondrial content of GSH and MDA were returned to control values. Thus, although endosulfan can have neurotoxic effects in brain rats, this toxicity can be prevented by quercetin.
Show more [+] Less [-]Oxidative stress and brain mitochondria swelling induced by endosulfan and protective role of quercetin in rat Full text
2015
Lakroun, Zhoura | Kebieche, Mohamed | Lahouel, Asma | Zama, Djamila | Desor, Frederique | Soulimani, Rachid
The neurological damages resulted by endosulfan poisoning is not completely elucidated, especially in cellular organelles such as mitochondria. In the present study, the pro-oxidant effect of endosulfan on brain mitochondria was first investigated. Gavages of endosulfan into rats at the dose of 2 mg/kg induced oxidative stress in this organelle since it provokes a significant reduction of catalase (CAT), superoxide dismutase (SOD), and glutathione (GSH) level. In addition, a significant increase in mitochondria swelling and malondialdehyde (MDA) levels were observed in neuronal mitochondria, indicating clearly an intense peroxidation within mitochondria. Second, the protective effect of quercetin (QE) (10 mg/kg) against endosulfan-induced oxidative stress in mitochondria was also assessed. Indeed, the pretreatment of rats with QE protects brain mitochondria from oxidative stress, lipid peroxidation, and mitochondria swelling induced by endosulfan. The activities of antioxidant enzymes and the mitochondrial content of GSH and MDA were returned to control values. Thus, although endosulfan can have neurotoxic effects in brain rats, this toxicity can be prevented by quercetin.
Show more [+] Less [-]Isolation and characterization of Bradyrhizobium sp. SR1 degrading two β-triketone herbicides Full text
2015
Romdhane, Sana | Devers-Lamrani, Marion | Martin-Laurent, Fabrice | Calvayrac, Christophe | Rocaboy-Faquet, Emilie | Riboul, David | Cooper, Jean-François | Barthelmebs, Lise | Laboratoire de Chimie des Biomolécules et de l'Environnement (LCBE) ; Université Montpellier 1 (UM1)-Université de Perpignan Via Domitia (UPVD) | Agroécologie [Dijon] ; Institut National de la Recherche Agronomique (INRA)-Université de Bourgogne (UB)-AgroSup Dijon - Institut National Supérieur des Sciences Agronomiques, de l'Alimentation et de l'Environnement | Laboratoire de Biodiversité et Biotechnologies Microbiennes (LBBM) ; Observatoire océanologique de Banyuls (OOB) ; Université Pierre et Marie Curie - Paris 6 (UPMC)-Centre National de la Recherche Scientifique (CNRS)-Université Pierre et Marie Curie - Paris 6 (UPMC)-Centre National de la Recherche Scientifique (CNRS)-PIERRE FABRE-EDF (EDF)-Centre National de la Recherche Scientifique (CNRS) | Laboratoire de Génie Chimique (LGC) ; Université Toulouse III - Paul Sabatier (UT3) ; Université de Toulouse (UT)-Université de Toulouse (UT)-Centre National de la Recherche Scientifique (CNRS)-Institut National Polytechnique (Toulouse) (Toulouse INP) ; Université de Toulouse (UT)
International audience | In this study, a bacterial strain able to use sulcotrione,a β-triketone herbicide, as sole source of carbon and energy was isolated from soil samples previously treated with this herbicide. Phylogenetic study based on16S rRNA gene sequence showed that the isolate has 100 % of similarity with several Bradyrhizobium and was accordingly designated as Bradyrhizobium sp. SR1. Plasmid profiling revealed the presence of a large plasmid (>50 kb) in SR1 not cured under nonselective conditions. Its transfer to Escherichia coli by electroporation failed to induce β-triketone degrading capacity,suggesting that degrading genes possibly located on this plasmid cannot be expressed in E. coli or that they are not plasmid borne. The evaluation of the SR1 ability to degrade various synthetic (mesotrione and tembotrione) and natural (leptospermone) triketones showed that this strain was also able to degrademesotrione. Although SR1 was able to entirely dissipate both herbicides, degradation rate of sulcotrione was ten times higher than that of mesotrione, showing a greater affinity of degrading-enzyme system to sulcotrione. Degradation pathway of sulcotrione involved the formation of 2-chloro-4-mesylbenzoic acid (CMBA), previously identified in sulcotrione degradation, and of a new metabolite identified as hydroxy-sulcotrione.Mesotrione degradation pathway leads to the accumulation of-methylsulfonyl-2-nitrobenzoic acid(MNBA) and 2-amino-4 methylsulfonylbenzoic acid(AMBA), two well-known metabolites of this herbicide. Along with the dissipation of β-triketones, one could observe the decrease in 4-hydroxyphenylpyruvate dioxygenase(HPPD) inhibition, indicating that toxicity was due to parent molecules, and not to the formed metabolites. This is the first report of the isolation of bacterial strain able to transform two β-triketones.
Show more [+] Less [-]Effects of neonicotinoids and fipronil on non-target invertebrates Full text
2015
Pisa, L.W. | Amaral-Rogers, V. | Belzunces, Luc | Bonmatin, J-M. | Downs, C.A. | Goulson, D. | Kreutzweiser, D.P. | Krupke, C. | Liess, M. | Mcfield, M. | Morrissey, C.A. | Noome, D.A. | Settele, J. | Simon-Delso, N. | Stark, J. D. | van Der Sluijs, Jeroen P. | van Dyck, H. | Wiemers, M. | Universiteit Utrecht / Utrecht University [Utrecht] | Buglife | Abeilles et environnement (AE) ; Institut National de la Recherche Agronomique (INRA) | Centre de biophysique moléculaire (CBM) ; Université d'Orléans (UO)-Université de Tours (UT)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Institut de Chimie - CNRS Chimie (INC-CNRS)-Centre National de la Recherche Scientifique (CNRS) | Haereticus Environmental Laboratory ; Partenaires INRAE | School of Life Sciences ; University of Sussex | Canadian Forest Service ; Natural Resources Canada (NRCan) | Department of Entomology ; Michigan State University [East Lansing] ; Michigan State University System-Michigan State University System | Helmholtz Zentrum für Umweltforschung = Helmholtz Centre for Environmental Research (UFZ) | Smithsonian Institution | University of Saskatchewan [Saskatoon, Canada] (U of S) | Kijani, Kasungu national park ; Partenaires INRAE | Department of Community Ecology ; Helmholtz Zentrum für Umweltforschung = Helmholtz Centre for Environmental Research (UFZ) | German Centre for Integrative Biodiversity Research (iDiv) | Centre Apicole de Recherche et Information ; Partenaires INRAE | Washington State University (WSU) | Centre for the Study of the Sciences and the Humanities (SVT) ; University of Bergen (UiB) | Université Catholique de Louvain = Catholic University of Louvain (UCL)
Effects of neonicotinoids and fipronil on non-target invertebrates Full text
2015
Pisa, L.W. | Amaral-Rogers, V. | Belzunces, Luc | Bonmatin, J-M. | Downs, C.A. | Goulson, D. | Kreutzweiser, D.P. | Krupke, C. | Liess, M. | Mcfield, M. | Morrissey, C.A. | Noome, D.A. | Settele, J. | Simon-Delso, N. | Stark, J. D. | van Der Sluijs, Jeroen P. | van Dyck, H. | Wiemers, M. | Universiteit Utrecht / Utrecht University [Utrecht] | Buglife | Abeilles et environnement (AE) ; Institut National de la Recherche Agronomique (INRA) | Centre de biophysique moléculaire (CBM) ; Université d'Orléans (UO)-Université de Tours (UT)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Institut de Chimie - CNRS Chimie (INC-CNRS)-Centre National de la Recherche Scientifique (CNRS) | Haereticus Environmental Laboratory ; Partenaires INRAE | School of Life Sciences ; University of Sussex | Canadian Forest Service ; Natural Resources Canada (NRCan) | Department of Entomology ; Michigan State University [East Lansing] ; Michigan State University System-Michigan State University System | Helmholtz Zentrum für Umweltforschung = Helmholtz Centre for Environmental Research (UFZ) | Smithsonian Institution | University of Saskatchewan [Saskatoon, Canada] (U of S) | Kijani, Kasungu national park ; Partenaires INRAE | Department of Community Ecology ; Helmholtz Zentrum für Umweltforschung = Helmholtz Centre for Environmental Research (UFZ) | German Centre for Integrative Biodiversity Research (iDiv) | Centre Apicole de Recherche et Information ; Partenaires INRAE | Washington State University (WSU) | Centre for the Study of the Sciences and the Humanities (SVT) ; University of Bergen (UiB) | Université Catholique de Louvain = Catholic University of Louvain (UCL)
International audience | We assessed the state of knowledge regarding the effects of large-scale pollution with neonicotinoid insecticides and fipronil on non-target invertebrate species of terrestrial, freshwater and marine environments. A large section of the assessment is dedicated to the state of knowledge on sublethal effects on honeybees (<em>Apis mellifera</em>) because this important pollinator is the most studied non-target invertebrate species. Lepidoptera (butterflies and moths), Lumbricidae (earthworms), Apoidae sensu lato (bumblebees, solitary bees) and the section “other invertebrates” review available studies on the other terrestrial species. The sections on freshwater and marine species are rather short as little is known so far about the impact of neonicotinoid insecticides and fipronil on the diverse invertebrate fauna of these widely exposed habitats. For terrestrial and aquatic invertebrate species, the known effects of neonicotinoid pesticides and fipronil are described ranging from organismal toxicology and behavioural effects to population-level effects. For earthworms, freshwater and marine species, the relation of findings to regulatory risk assessment is described. Neonicotinoid insecticides exhibit very high toxicity to a wide range of invertebrates, particularly insects, and field-realistic exposure is likely to result in both lethal and a broad range of important sublethal impacts. There is a major knowledge gap regarding impacts on the grand majority of invertebrates, many of which perform essential roles enabling healthy ecosystem functioning. The data on the few non-target species on which field tests have been performed are limited by major flaws in the outdated test protocols. Despite large knowledge gaps and uncertainties, enough knowledge exists to conclude that existing levels of pollution with neonicotinoids and fipronil resulting from presently authorized uses frequently exceed the lowest observed adverse effect concentrations and are thus likely to have large-scale and wide ranging negative biological and ecological impacts on a wide range of non-target invertebrates in terrestrial, aquatic, marine and benthic habitats.
Show more [+] Less [-]Effects of neonicotinoids and fipronil on non-target invertebrates Full text
2015
Pisa, L. W. | Amaral-Rogers, V. | Belzunces, L. P. | Bonmatin, J. M. | Downs, C. A. | Goulson, D. | Kreutzweiser, D. P. | Krupke, C. | Liess, M. | McField, M. | Morrissey, C. A. | Noome, D. A. | Settele, J. | Simon-Delso, N. | Stark, J. D. | Van der Sluijs, J. P. | Van Dyck, H. | Wiemers, M.
We assessed the state of knowledge regarding the effects of large-scale pollution with neonicotinoid insecticides and fipronil on non-target invertebrate species of terrestrial, freshwater and marine environments. A large section of the assessment is dedicated to the state of knowledge on sublethal effects on honeybees (Apis mellifera) because this important pollinator is the most studied non-target invertebrate species. Lepidoptera (butterflies and moths), Lumbricidae (earthworms), Apoidae sensu lato (bumblebees, solitary bees) and the section “other invertebrates” review available studies on the other terrestrial species. The sections on freshwater and marine species are rather short as little is known so far about the impact of neonicotinoid insecticides and fipronil on the diverse invertebrate fauna of these widely exposed habitats. For terrestrial and aquatic invertebrate species, the known effects of neonicotinoid pesticides and fipronil are described ranging from organismal toxicology and behavioural effects to population-level effects. For earthworms, freshwater and marine species, the relation of findings to regulatory risk assessment is described. Neonicotinoid insecticides exhibit very high toxicity to a wide range of invertebrates, particularly insects, and field-realistic exposure is likely to result in both lethal and a broad range of important sublethal impacts. There is a major knowledge gap regarding impacts on the grand majority of invertebrates, many of which perform essential roles enabling healthy ecosystem functioning. The data on the few non-target species on which field tests have been performed are limited by major flaws in the outdated test protocols. Despite large knowledge gaps and uncertainties, enough knowledge exists to conclude that existing levels of pollution with neonicotinoids and fipronil resulting from presently authorized uses frequently exceed the lowest observed adverse effect concentrations and are thus likely to have large-scale and wide ranging negative biological and ecological impacts on a wide range of non-target invertebrates in terrestrial, aquatic, marine and benthic habitats.
Show more [+] Less [-]Effects of neonicotinoids and fipronil on non-target invertebrates | Effets des néonicotinoïdes et du fipronil sur les invertébrés Full text
2015
Pisa, L. W. | Amaral-Rogers, V. | Belzunces, L.P. | Bonmatin, Jean-Marc | Downs, C. A. | Goulson, D. | Kreutzweiser, D. P. | Krupke, C. | Liess, M. | Mcfield, M. | Morrissey, C. A. | Noome, D. A. | Settele, J. | Simon-Delso, N. | Stark, J. D. | van Der Sluijs, J. P. | van Dyck, H. | Wiemers, M. | Laboratoire de Toxicologie Environnementale (LTE) ; Institut National de la Recherche Agronomique (INRA) | Centre de biophysique moléculaire (CBM) ; Université d'Orléans (UO)-Université de Tours (UT)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Institut de Chimie - CNRS Chimie (INC-CNRS)-Centre National de la Recherche Scientifique (CNRS) | Helmholtz Zentrum für Umweltforschung = Helmholtz Centre for Environmental Research (UFZ) | Department Community Ecology [UFZ Leipzig] ; Helmholtz Zentrum für Umweltforschung = Helmholtz Centre for Environmental Research (UFZ)
We assessed the state of knowledge regarding the effects of large-scale pollution with neonicotinoid insecticides and fipronil on non-target invertebrate species of terrestrial, freshwater and marine environments. A large section of the assessment is dedicated to the state of knowledge on sublethal effects on honeybees (Apis mellifera) because this important pollinator is the most studied non-target invertebrate species. Lepidoptera (butterflies and moths), Lumbricidae (earthworms), Apoidae sensu lato (bumblebees, solitary bees) and the section “other invertebrates” review available studies on the other terrestrial species. The sections on freshwater and marine species are rather short as little is known so far about the impact of neonicotinoid insecticides and fipronil on the diverse invertebrate fauna of these widely exposed habitats. For terrestrial and aquatic invertebrate species, the known effects of neonicotinoid pesticides and fipronil are described ranging from organismal toxicology and behavioural effects to population-level effects. For earthworms, freshwater and marine species, the relation of findings to regulatory risk assessment is described. Neonicotinoid insecticides exhibit very high toxicity to a wide range of invertebrates, particularly insects, and field-realistic exposure is likely to result in both lethal and a broad range of important sublethal impacts. There is a major knowledge gap regarding impacts on the grand majority of invertebrates, many of which perform essential roles enabling healthy ecosystem functioning. The data on the few non-target species on which field tests have been performed are limited by major flaws in the outdated test protocols. Despite large knowledge gaps and uncertainties, enough knowledge exists to conclude that existing levels of pollution with neonicotinoids and fipronil resulting from presently authorized uses frequently exceed the lowest observed adverse effect concentrations and are thus likely to have large-scale and wide ranging negative biological and ecological impacts on a wide range of non-target invertebrates in terrestrial, aquatic, marine and benthic habitats.
Show more [+] Less [-]Effects of neonicotinoids and fipronil on non-target invertebrates Full text
2015
Amaral-Rogers, V. | Belzunces, Luc | Bonmatin, J-M. | Downs, C.A. | Goulson, D. | Kreutzweiser, D.P. | Krupke, C. | Liess, M. | McField, M. | Morrissey, C.A. | Noome, D.A. | Settele, J. | Simon-Delso, N. | Stark, J. D. | Van der Sluijs, Jeroen P. | Van Dyck, H. | Wiemers, M.
We assessed the state of knowledge regarding the effects of large-scale pollution with neonicotinoid insecticides and fipronil on non-target invertebrate species of terrestrial, freshwater and marine environments. A large section of the assessment is dedicated to the state of knowledge on sublethal effects on honeybees (Apis mellifera) because this important pollinator is the most studied non-target invertebrate species. Lepidoptera (butterflies and moths), Lumbricidae (earthworms), Apoidae sensu lato (bumblebees, solitary bees) and the section “other invertebrates” review available studies on the other terrestrial species. The sections on freshwater and marine species are rather short as little is known so far about the impact of neonicotinoid insecticides and fipronil on the diverse invertebrate fauna of these widely exposed habitats. For terrestrial and aquatic invertebrate species, the known effects of neonicotinoid pesticides and fipronil are described ranging from organismal toxicology and behavioural effects to population-level effects. For earthworms, freshwater and marine species, the relation of findings to regulatory risk assessment is described. Neonicotinoid insecticides exhibit very high toxicity to a wide range of invertebrates, particularly insects, and field-realistic exposure is likely to result in both lethal and a broad range of important sublethal impacts. Thereis a major knowledge gap regarding impacts on the grand majority of invertebrates, many of which perform essential roles enabling healthy ecosystem functioning. The data on the few non-target species on which field tests have been performed are limited by major flaws in the outdated test protocols. Despite large knowledge gaps and uncertainties, enough knowledge exists to conclude that existing levels of pollution with neonicotinoids and fipronil resulting from presently authorized uses frequently exceed the lowest observed adverse effect concentrations and are thus likely to have large-scale and wide ranging negative biological and ecological impacts on a wide range of non-target invertebrates in terrestrial, aquatic, marine and benthic habitats.
Show more [+] Less [-]Lab-scale experimental strategy for determining micropollutant partition coefficient and biodegradation constants in activated sludge | Méthodologie de détermination du coefficient de partition et des constantes de biodégradation de micropolluants en boues activées Full text
2015
Pomies, Maxime | Choubert, J.M. | Wisniewski, Christelle | Miege, Cecile | Budzinski, H. | Coquery, Marina | Milieux aquatiques, écologie et pollutions (UR MALY) ; Institut national de recherche en sciences et technologies pour l'environnement et l'agriculture (IRSTEA) | Démarche intégrée pour l'obtention d'aliments de qualité (UMR Qualisud) ; Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-Université Montpellier 1 (UM1)-Université Montpellier 2 - Sciences et Techniques (UM2)-Centre international d'études supérieures en sciences agronomiques (Montpellier SupAgro)-Avignon Université (AU)-Université de La Réunion (UR)-Université de Montpellier (UM)-Institut national d’études supérieures agronomiques de Montpellier (Montpellier SupAgro) | Environnements et Paléoenvironnements OCéaniques (EPOC) ; École Pratique des Hautes Études (EPHE) ; Université Paris Sciences et Lettres (PSL)-Université Paris Sciences et Lettres (PSL)-Université de Bordeaux (UB)-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National de la Recherche Scientifique (CNRS)
Lab-scale experimental strategy for determining micropollutant partition coefficient and biodegradation constants in activated sludge | Méthodologie de détermination du coefficient de partition et des constantes de biodégradation de micropolluants en boues activées Full text
2015
Pomies, Maxime | Choubert, J.M. | Wisniewski, Christelle | Miege, Cecile | Budzinski, H. | Coquery, Marina | Milieux aquatiques, écologie et pollutions (UR MALY) ; Institut national de recherche en sciences et technologies pour l'environnement et l'agriculture (IRSTEA) | Démarche intégrée pour l'obtention d'aliments de qualité (UMR Qualisud) ; Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-Université Montpellier 1 (UM1)-Université Montpellier 2 - Sciences et Techniques (UM2)-Centre international d'études supérieures en sciences agronomiques (Montpellier SupAgro)-Avignon Université (AU)-Université de La Réunion (UR)-Université de Montpellier (UM)-Institut national d’études supérieures agronomiques de Montpellier (Montpellier SupAgro) | Environnements et Paléoenvironnements OCéaniques (EPOC) ; École Pratique des Hautes Études (EPHE) ; Université Paris Sciences et Lettres (PSL)-Université Paris Sciences et Lettres (PSL)-Université de Bordeaux (UB)-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National de la Recherche Scientifique (CNRS)
[Departement_IRSTEA]Ecotechnologies [TR1_IRSTEA]TED | International audience | The nitrifying/denitrifying activated sludge process removes several micropollutants from wastewater by sorption onto sludge and/or biodegradation. The objective of this paper is to propose and evaluate a lab-scale experimental strategy for the determination of partition coefficient and biodegradation constant for micropollutant with an objective of modelling their removal. Four pharmaceutical compounds (ibuprofen, atenolol, diclofenac and fluoxetine) covering a wide hydrophobicity range (log Kow from 0.16 to 4.51) were chosen. Dissolved and particulate concentrations were monitored for 4 days, inside two reactors working under aerobic and anoxic conditions, and under different substrate feed conditions (biodegradable carbon and nitrogen). We determined the mechanisms responsible for the removal of the target compounds: (i) ibuprofen was biodegraded, mainly under aerobic conditions by cometabolism with biodegradable carbon, whereas anoxic conditions suppressed biodegradation; (ii) atenolol was biodegraded under both aerobic and anoxic conditions (with a higher biodegradation rate under aerobic conditions), and cometabolism with biodegradable carbon was the main mechanism; (iii) diclofenac and fluoxetine were removed by sorption only. Finally, the abilities of our strategy were evaluated by testing the suitability of the parameters for simulating effluent concentrations and removal efficiency at a full-scale plant.
Show more [+] Less [-]Lab-scale experimental strategy for determining micropollutant partition coefficient and biodegradation constants in activated sludge Full text
2015
Pomiès, M. | Choubert, J. M. | Wisniewski, C. | Miège, C. | Budzinski, H. | Coquery, M.
The nitrifying/denitrifying activated sludge process removes several micropollutants from wastewater by sorption onto sludge and/or biodegradation. The objective of this paper is to propose and evaluate a lab-scale experimental strategy for the determination of partition coefficient and biodegradation constant for micropollutant with an objective of modelling their removal. Four pharmaceutical compounds (ibuprofen, atenolol, diclofenac and fluoxetine) covering a wide hydrophobicity range (log Kₒwfrom 0.16 to 4.51) were chosen. Dissolved and particulate concentrations were monitored for 4 days, inside two reactors working under aerobic and anoxic conditions, and under different substrate feed conditions (biodegradable carbon and nitrogen). We determined the mechanisms responsible for the removal of the target compounds: (i) ibuprofen was biodegraded, mainly under aerobic conditions by cometabolism with biodegradable carbon, whereas anoxic conditions suppressed biodegradation; (ii) atenolol was biodegraded under both aerobic and anoxic conditions (with a higher biodegradation rate under aerobic conditions), and cometabolism with biodegradable carbon was the main mechanism; (iii) diclofenac and fluoxetine were removed by sorption only. Finally, the abilities of our strategy were evaluated by testing the suitability of the parameters for simulating effluent concentrations and removal efficiency at a full-scale plant.
Show more [+] Less [-]PAH occurrence in chalk river systems from the Jura region (France). Pertinence of suspended particulate matter and sediment as matrices for river quality monitoring Full text
2015
Chiffre, Axelle | Degiorgi, François | Morin-Crini, Nadia | Bolard, Audrey | Chanez, Etienne | Badot, Pierre-Marie | Laboratoire Chrono-environnement (UMR 6249) (LCE) ; Centre National de la Recherche Scientifique (CNRS)-Université de Franche-Comté (UFC) ; Université Bourgogne Franche-Comté [COMUE] (UBFC)-Université Bourgogne Franche-Comté [COMUE] (UBFC) | Centre National de la Recherche Scientifique (CNRS) | Institut National de la Recherche Agronomique (INRA)
PAH occurrence in chalk river systems from the Jura region (France). Pertinence of suspended particulate matter and sediment as matrices for river quality monitoring Full text
2015
Chiffre, Axelle | Degiorgi, François | Morin-Crini, Nadia | Bolard, Audrey | Chanez, Etienne | Badot, Pierre-Marie | Laboratoire Chrono-environnement (UMR 6249) (LCE) ; Centre National de la Recherche Scientifique (CNRS)-Université de Franche-Comté (UFC) ; Université Bourgogne Franche-Comté [COMUE] (UBFC)-Université Bourgogne Franche-Comté [COMUE] (UBFC) | Centre National de la Recherche Scientifique (CNRS) | Institut National de la Recherche Agronomique (INRA)
International audience
Show more [+] Less [-]PAH occurrence in chalk river systems from the Jura region (France). Pertinence of suspended particulate matter and sediment as matrices for river quality monitoring Full text
2015
Chiffre, Axelle | Degiorgi, François | Morin-Crini, Nadia | Bolard, Audrey | Chanez, Etienne | Badot, Pierre-Marie
This study investigates the variations of polycyclic aromatic hydrocarbon (PAH) levels in surface water, suspended particulate matter (SPM) and sediment upstream and downstream of the discharges of two wastewater treatment plant (WWTP) effluents. Relationships between the levels of PAHs in these different matrices were also investigated. The sum of 16 US EPA PAHs ranged from 73.5 to 728.0 ng L⁻¹ in surface water and from 85.4 to 313.1 ng L⁻¹ in effluent. In SPM and sediment, ∑₁₆PAHs ranged from 749.6 to 2,463 μg kg⁻¹ and from 690.7 μg kg⁻¹ to 3,625.6 μg kg⁻¹, respectively. Investigations performed upstream and downstream of both studied WWTPs showed that WWTP discharges may contribute to the overall PAH contaminations in the Loue and the Doubs rivers. Comparison between gammarid populations upstream and downstream of WWTP discharge showed that biota was impacted by the WWTP effluents. When based only on surface water samples, the assessment of freshwater quality did not provide evidence for a marked PAH contamination in either of the rivers studied. However, using SPM and sediment samples, we found PAH contents exceeding sediment quality guidelines. We conclude that sediment and SPM are relevant matrices to assess overall PAH contamination in aquatic ecosystems. Furthermore, we found a positive linear correlation between PAH contents of SPM and sediment, showing that SPM represents an integrating matrix which is able to provide meaningful data about the overall contamination over a given time span.
Show more [+] Less [-]Impact of clay mineral, wood sawdust or root organic matter on the bacterial and fungal community structures in two aged PAH-contaminated soils Full text
2015
Cébron, Aurélie | Beguiristain, Thierry | Bongoua-Devisme, Jeanne | Denonfoux, Jérémie | Faure, Pierre | Lorgeoux, Catherine | Ouvrard, Stéphanie | Parisot, Nicolas | Peyret, Pierre | Leyval, Corinne | Laboratoire Interdisciplinaire des Environnements Continentaux (LIEC) ; Institut national des sciences de l'Univers (INSU - CNRS)-Université de Lorraine (UL)-Centre National de la Recherche Scientifique (CNRS) | Université Clermont Auvergne [2017-2020] (UCA [2017-2020]) | GeoRessources ; Institut national des sciences de l'Univers (INSU - CNRS)-Centre de recherches sur la géologie des matières premières minérales et énergétiques (CREGU)-Université de Lorraine (UL)-Centre National de la Recherche Scientifique (CNRS) | Laboratoire Sols et Environnement (LSE) ; Institut National de la Recherche Agronomique (INRA)-Université de Lorraine (UL)
International audience | The high organic pollutant concentration of aged polycyclic aromatic hydrocarbon (PAH)-contaminated wasteland soils is highly recalcitrant to biodegradation due to its very low bioavailability. In such soils, the microbial community is well adapted to the pollution, but the microbial activity is limited by nutrient availability. Management strategies could be applied to modify the soil microbial functioning as well as the PAH contamination through various amendment types. The impact of amendment with clay minerals (montmorillonite), wood sawdust and organic matter plant roots on microbial community structure was investigated on two aged PAH-contaminated soils both in laboratory and 1-year on-site pot experiments. Total PAH content (sum of 16 PAHs of the US-EPA list) and polar polycyclic aromatic compounds (pPAC) were monitored as well as the available PAH fraction using the Tenax method. The bacterial and fungal community structures were monitored using fingerprinting thermal gradient gel electrophoresis (TTGE) method. The abundance of bacteria (16S rRNA genes), fungi (18S rRNA genes) and PAH degraders (PAH-ring hydroxylating dioxygenase and catechol dioxygenase genes) was followed through qPCR assays. Although the treatments did not modify the total and available PAH content, the microbial community density, structure and the PAH degradation potential changed when fresh organic matter was provided as sawdust and under rhizosphere influence, while the clay mineral only increased the percentage of catechol-1,2-dioxygenase genes. The abundance of bacteria and fungi and the percentage of fungi relative to bacteria were enhanced in soil samples supplemented with wood sawdust and in the plant rhizospheric soils. Two distinct fungal populations developed in the two soils supplemented with sawdust, i.e. fungi related to Chaetomium and Neurospora genera and Brachyconidiellopsis and Pseudallescheria genera, in H and NM soils respectively. Wood sawdust amendment favoured the development of PAH-degrading bacteria holding Gram-negative PAH-ring hydroxylating dioxygenase, catechol-1,2-dioxygenase and catechol-2,3-dioxygenase genes. Regarding the total community structure, bacteria closely related to Thiobacillus (beta-Proteobacteria) and Steroidobacter (gamma-Proteobacteria) genera were favoured by wood sawdust amendment. In both soils, plant rhizospheres induced the development of fungi belonging to Ascomycota and related to Alternaria and Fusarium genera. Bacteria closely related to Luteolibacter (Verrucomicrobia) and Microbacterium (Actinobacteria) were favoured in alfalfa and ryegrass rhizosphere.
Show more [+] Less [-]Conclusions of the Worldwide Integrated Assessment on the risks of neonicotinoids and fipronil to biodiversity and ecosystem functioning Full text
2015
van Der Sluijs, J. P. | Amaral-Rogers, V. | Belzunces, L.P. | Bijleveld van Lexmond, M. F. I. J. | Bonmatin, J-M. | Chagnon, M. | Downs, C. A. | Furlan, L. | Gibbons, D. W. | Giorio, C. | Girolami, V. | Goulson, D. | Kreutzweiser, D. P. | Krupke, C. | Liess, M. | Long, E. | Mcfield, M. | Mineau, P. | Mitchell, E. A. D. | Morrissey, C. A. | Noome, D. A. | Pisa, L. | Settele, J. | Simon-Delso, N. | Stark, J. D. | Tapparo, A. | van Dyck, H. | van Praagh, J. | Whitehorn, P. R. | Wiemers, M. | Copernicus Institute of Sustainable Development [Utrecht] ; Universiteit Utrecht / Utrecht University [Utrecht] | Buglife | Abeilles et environnement (AE) ; Institut National de la Recherche Agronomique (INRA) | Centre de biophysique moléculaire (CBM) ; Université d'Orléans (UO)-Université de Tours (UT)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Institut de Chimie - CNRS Chimie (INC-CNRS)-Centre National de la Recherche Scientifique (CNRS) | Beekeeping Research and Information Center
Conclusions of the Worldwide Integrated Assessment on the risks of neonicotinoids and fipronil to biodiversity and ecosystem functioning Full text
2015
van Der Sluijs, J. P. | Amaral-Rogers, V. | Belzunces, L.P. | Bijleveld van Lexmond, M. F. I. J. | Bonmatin, J-M. | Chagnon, M. | Downs, C. A. | Furlan, L. | Gibbons, D. W. | Giorio, C. | Girolami, V. | Goulson, D. | Kreutzweiser, D. P. | Krupke, C. | Liess, M. | Long, E. | Mcfield, M. | Mineau, P. | Mitchell, E. A. D. | Morrissey, C. A. | Noome, D. A. | Pisa, L. | Settele, J. | Simon-Delso, N. | Stark, J. D. | Tapparo, A. | van Dyck, H. | van Praagh, J. | Whitehorn, P. R. | Wiemers, M. | Copernicus Institute of Sustainable Development [Utrecht] ; Universiteit Utrecht / Utrecht University [Utrecht] | Buglife | Abeilles et environnement (AE) ; Institut National de la Recherche Agronomique (INRA) | Centre de biophysique moléculaire (CBM) ; Université d'Orléans (UO)-Université de Tours (UT)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Institut de Chimie - CNRS Chimie (INC-CNRS)-Centre National de la Recherche Scientifique (CNRS) | Beekeeping Research and Information Center
International audience | The side effects of the current global use of pesticides on wildlife, particularly at higher levels of biological organization : populations, communities and ecosystems, are poorly understood (Köhler and Triebskorn 2013). Here, we focus on one of the problematic groups of agrochemicals, the systemic insecticides fipronil and those of the neonicotinoid family. The increasing global reliance on the partly prophylactic use of these persistent and potent neurotoxic systemic insecticides has raised concerns about their impacts on biodiversity, ecosystem functioning and ecosystem services provided by a wide range of affected species and environments. The present scale of use, combined with the properties of these compounds, has resulted in widespread contamination of agricultural soils, freshwater resources, wetlands, non-target vegetation and estuarine and coastal marine systems, which means that many organisms inhabiting these habitats are being repeatedly and chronically expose.
Show more [+] Less [-]Conclusions of the Worldwide Integrated Assessment on the risks of neonicotinoids and fipronil to biodiversity and ecosystem functioning Full text
2014
van der Sluijs, Jeroen P | Amaral-Rogers, Vanessa | Belzunces, Luc P | Bijleveld van Lexmond, Maarten F I J | Bonmatin, Jean-Marc | Chagnon, Madeleine | Downs, Craig | Furlan, Lorenzo | Gibbons, David W | Giorio, Chiara | Girolami, Vincenzo | Goulson, Dave | Kreutzweiser, David P | Krupke, Christian H | Whitehorn, Penelope R | Utrecht University | Buglife | French National Institute for Agricultural Research (INRA) | Independent | The National Center for Scientific Research (CNRS) | University of Quebec in Montreal (UQAM) | Haereticus Environmental Laboratory | Veneto Agricoltura | Royal Society for the Protection of Birds (RSPB) | University of Cambridge | University of Padua | University of Sussex | Natural Resources Canada | Purdue University | Biological and Environmental Sciences | 0000-0001-9852-1012
Additional co-authors: M. Liess, E. Long, M. McField, P. Mineau, E. A. D. Mitchell, C. A. Morrissey, D. A. Noome, L. Pisa, J. Settele, N. Simon-Delso, J. D. Stark, A. Tapparo, H. Van Dyck, J. van Praagh, M. Wiemers
Show more [+] Less [-]Transfer of metal(loid)s in a small vineyard catchment: contribution of dissolved and particulate fractions in river for contrasted hydrological conditions | Transfert des métaux/métalloides dans un petit bassin versant viticole : contribution des fractions dissoutes et particulaires dans la rivière dans des conditions hydrologiques contrastées Full text
2015
Rabiet, Marie-Josèphe | Coquery, Marina | Carluer, Nadia | Gahou, J. | Gouy, Véronique | Milieux aquatiques, écologie et pollutions (UR MALY) ; Institut national de recherche en sciences et technologies pour l'environnement et l'agriculture (IRSTEA)
Transfer of metal(loid)s in a small vineyard catchment: contribution of dissolved and particulate fractions in river for contrasted hydrological conditions | Transfert des métaux/métalloides dans un petit bassin versant viticole : contribution des fractions dissoutes et particulaires dans la rivière dans des conditions hydrologiques contrastées Full text
2015
Rabiet, Marie-Josèphe | Coquery, Marina | Carluer, Nadia | Gahou, J. | Gouy, Véronique | Milieux aquatiques, écologie et pollutions (UR MALY) ; Institut national de recherche en sciences et technologies pour l'environnement et l'agriculture (IRSTEA)
[Departement_IRSTEA]Eaux [TR1_IRSTEA]ARCEAU [TR2_IRSTEA]BELCA | International audience | The use of inorganic pesticides in viticulture leads to the accumulation of metal(loid)s in soils which can be transferred to the hydro-systems (groundwater and surface water) via several processes. This study reports on the occurrence and behavior of metal(loid)s (Li, Al, Cr, Ni, Cu, Zn, As, Sr, and Ba), with a particular focus on Cu, Zn, and As, in a small stream draining a vineyard catchment. Base flow and flood events were monitored in order to assess the spatiotemporal variability of metal(loid) concentrations and to evaluate the contribution of the particulate fraction to the transfer of metal(loid)s according to the hydrological conditions. Results show that very different patterns of metal(loid)s were observed in the Morcille River according to the hydrological conditions. In base flow conditions, Cu and As were mainly transported in dissolved phase, which contributed to more than 70 and 80 %, respectively, of the total load during this period. On the contrary, during base flow, Zn was mainly transported as associated to particles (90 %). During the two storm events monitored, the particulate fraction was dominant, as its represented around 74–80 %, 97 %, and 50–70 % of the total Cu, Zn, and As load in the river, respectively. Thus,despite a weaker affinity for particles during floods (decrease of particulate content during floods), metal(loid)s were mainly brought as particles, given that high amounts of suspended particulate matter (up to 2031 mg/L) were mobilized. Finally, comprehensive fluxes estimations confirmed that floods were responsible for more than 90 % of the total Cu, Zn and 75 % for As load transiting in the Morcille River in August within a very short period of time (less than 17 %).
Show more [+] Less [-]Transfer of metal(loid)s in a small vineyard catchment: contribution of dissolved and particulate fractions in river for contrasted hydrological conditions Full text
2015
Rabiet, M. | Coquery, M. | Carluer, N. | Gahou, J. | Gouy, V.
The use of inorganic pesticides in viticulture leads to the accumulation of metal(loid)s in soils which can be transferred to the hydro-systems (groundwater and surface water) via several processes. This study reports on the occurrence and behavior of metal(loid)s (Li, Al, Cr, Ni, Cu, Zn, As, Sr, and Ba), with a particular focus on Cu, Zn, and As, in a small stream draining a vineyard catchment. Base flow and flood events were monitored in order to assess the spatiotemporal variability of metal(loid) concentrations and to evaluate the contribution of the particulate fraction to the transfer of metal(loid)s according to the hydrological conditions. Results show that very different patterns of metal(loid)s were observed in the Morcille River according to the hydrological conditions. In base flow conditions, Cu and As were mainly transported in dissolved phase, which contributed to more than 70 and 80 %, respectively, of the total load during this period. On the contrary, during base flow, Zn was mainly transported as associated to particles (90 %). During the two storm events monitored, the particulate fraction was dominant, as its represented around 74–80 %, 97 %, and 50–70 % of the total Cu, Zn, and As load in the river, respectively. Thus, despite a weaker affinity for particles during floods (decrease of particulate content during floods), metal(loid)s were mainly brought as particles, given that high amounts of suspended particulate matter (up to 2031 mg/L) were mobilized. Finally, comprehensive fluxes estimations confirmed that floods were responsible for more than 90 % of the total Cu, Zn and 75 % for As load transiting in the Morcille River in August within a very short period of time (less than 17 %).
Show more [+] Less [-]Assessment of palladium footprint from road traffic in two highway environments Full text
2015
Clement, Nathalie | Muresan, Bogdan | Hedde, Mickael | Francois, Denis | Environnement, Aménagement, Sécurité et Eco-conception (IFSTTAR/AME/EASE) ; Institut Français des Sciences et Technologies des Transports, de l'Aménagement et des Réseaux (IFSTTAR)-PRES Université Nantes Angers Le Mans (UNAM) | Ecologie fonctionnelle et écotoxicologie des agroécosystèmes (ECOSYS) ; Institut National de la Recherche Agronomique (INRA)-AgroParisTech
Assessment of palladium footprint from road traffic in two highway environments Full text
2015
Clement, Nathalie | Muresan, Bogdan | Hedde, Mickael | Francois, Denis | Environnement, Aménagement, Sécurité et Eco-conception (IFSTTAR/AME/EASE) ; Institut Français des Sciences et Technologies des Transports, de l'Aménagement et des Réseaux (IFSTTAR)-PRES Université Nantes Angers Le Mans (UNAM) | Ecologie fonctionnelle et écotoxicologie des agroécosystèmes (ECOSYS) ; Institut National de la Recherche Agronomique (INRA)-AgroParisTech
Avec les remerciements à Jodie Thénard | Palladium (Pd) is an emerging eco-toxic pollutant from vehicle catalytic converters, emitted worldwide for more than 2 decades. Nowadays, the spatial extent of Pd fallout is growing along roads, but its subsequent fate in neighboring terrestrial ecosystems has not been extensively addressed yet. Two sites representative of contrasted natural environments (field, forest) but located under similar ambient conditions were selected to isolate and analyze the specific impact of vehicular Pd, along highway A71, France. Pd impregnation was assessed along 200 m-long transects perpendicular to the highway. Contents were measured in soils, earthworms, plant communities of the right-of-way (ROW) and the neighboring field (crop weeds), as well as in a moss, and bramble and ivy leaves in the forest. The direct impact of Pd fallouts appears to be confined in the grassy verge of the highway: ROW soils ([Pd] = 52-65 ng.g-1); earthworms ([Pd] = 18-38 ng.g-1); plant community ([Pd] = 10-23 ng.g-1). Pd footprint is pointed out by the accumulation index calculated for earthworms and plant communities even though transfer coefficients indicate the absence of bio-accumulation (TCs < 1). An indirect longer range transfer of Pd is identified, induced by hydric transport of organic matter.
Show more [+] Less [-]Assessment of palladium footprint from road traffic in two highway environments Full text
2015
Clement, N. | Muresan, B. | Hedde, M. | François, D.
Palladium (Pd) is an emerging eco-toxic pollutant from vehicle catalytic converters, emitted worldwide for more than two decades. Nowadays, the spatial extent of Pd fallout is growing along roads, but its subsequent fate in neighboring terrestrial ecosystems has not been extensively addressed yet. Two sites representative of contrasted natural environments (field, forest) but located under similar ambient conditions were selected to isolate and analyze the specific impact of vehicular Pd, along highway A71, France. Pd impregnation was assessed along 200-m-long transects perpendicular to the highway. Contents were measured in soils, earthworms, plant communities of the right of way (ROW), and the neighboring field (crop weeds), as well as in a moss, and bramble and ivy leaves in the forest. The direct impact of Pd fallouts appears to be confined in the grassy verge of the highway: ROW soils ([Pd] = 52–65 ng g⁻¹), earthworms ([Pd] = 18–38 ng g⁻¹), and plant community ([Pd] = 10–23 ng g⁻¹). Pd footprint is pointed out by the accumulation index calculated for earthworms and plant communities even though transfer coefficients indicate the absence of bioaccumulation (TCs < 1). An indirect longer range transfer of Pd is identified, induced by hydric transport of organic matter.
Show more [+] Less [-]Assessment of palladium footprint from road traffic in two highway environments Full text
2015
Clement, Nathalie | Muresan, Bogdan | Hedde, Mickael | Francois, Denis | Environnement, Aménagement, Sécurité et Eco-conception (IFSTTAR/AME/EASE) ; Institut Français des Sciences et Technologies des Transports, de l'Aménagement et des Réseaux (IFSTTAR)-PRES Université Nantes Angers Le Mans (UNAM) | Ecologie fonctionnelle et écotoxicologie des agroécosystèmes (ECOSYS) ; Institut National de la Recherche Agronomique (INRA)-AgroParisTech
Avec les remerciements à Jodie Thénard | Palladium (Pd) is an emerging eco-toxic pollutant from vehicle catalytic converters, emitted worldwide for more than 2 decades. Nowadays, the spatial extent of Pd fallout is growing along roads, but its subsequent fate in neighboring terrestrial ecosystems has not been extensively addressed yet. Two sites representative of contrasted natural environments (field, forest) but located under similar ambient conditions were selected to isolate and analyze the specific impact of vehicular Pd, along highway A71, France. Pd impregnation was assessed along 200 m-long transects perpendicular to the highway. Contents were measured in soils, earthworms, plant communities of the right-of-way (ROW) and the neighboring field (crop weeds), as well as in a moss, and bramble and ivy leaves in the forest. The direct impact of Pd fallouts appears to be confined in the grassy verge of the highway: ROW soils ([Pd] = 52-65 ng.g-1); earthworms ([Pd] = 18-38 ng.g-1); plant community ([Pd] = 10-23 ng.g-1). Pd footprint is pointed out by the accumulation index calculated for earthworms and plant communities even though transfer coefficients indicate the absence of bio-accumulation (TCs < 1). An indirect longer range transfer of Pd is identified, induced by hydric transport of organic matter.
Show more [+] Less [-]Substrates specialization in lipid compounds and hydrocarbons of Marinobacter genus. Full text
2015
Bonin, Patricia | Vieira, Christophe | Grimaud, Régis | Militon, Cécile | Cuny, Philippe | Lima, Oscar | Guasco, Sophie | Brussaard, Corina P D | Michotey, Valerie | Institut méditerranéen d'océanologie (MIO) ; Institut de Recherche pour le Développement (IRD)-Aix Marseille Université (AMU)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Toulon (UTLN)-Centre National de la Recherche Scientifique (CNRS) | MEB ; Institut méditerranéen d'océanologie (MIO) ; Institut de Recherche pour le Développement (IRD)-Aix Marseille Université (AMU)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Toulon (UTLN)-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD)-Aix Marseille Université (AMU)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Toulon (UTLN)-Centre National de la Recherche Scientifique (CNRS) | Laboratoire d'Ecologie Moléculaire, IBEAS, EA 3525 ; Université de Pau et des Pays de l'Adour (UPPA) | Ecosystèmes, biodiversité, évolution [Rennes] (ECOBIO) ; Université de Rennes (UR)-Institut Ecologie et Environnement - CNRS Ecologie et Environnement (INEE-CNRS) ; Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Observatoire des sciences de l'environnement de Rennes (OSERen) ; Université de Rennes (UR)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Rennes 2 (UR2)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Rennes 2 (UR2)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE) | Royal Netherlands Institute for Sea Research (NIOZ)
Substrates specialization in lipid compounds and hydrocarbons of Marinobacter genus. Full text
2015
Bonin, Patricia | Vieira, Christophe | Grimaud, Régis | Militon, Cécile | Cuny, Philippe | Lima, Oscar | Guasco, Sophie | Brussaard, Corina P D | Michotey, Valerie | Institut méditerranéen d'océanologie (MIO) ; Institut de Recherche pour le Développement (IRD)-Aix Marseille Université (AMU)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Toulon (UTLN)-Centre National de la Recherche Scientifique (CNRS) | MEB ; Institut méditerranéen d'océanologie (MIO) ; Institut de Recherche pour le Développement (IRD)-Aix Marseille Université (AMU)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Toulon (UTLN)-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD)-Aix Marseille Université (AMU)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Toulon (UTLN)-Centre National de la Recherche Scientifique (CNRS) | Laboratoire d'Ecologie Moléculaire, IBEAS, EA 3525 ; Université de Pau et des Pays de l'Adour (UPPA) | Ecosystèmes, biodiversité, évolution [Rennes] (ECOBIO) ; Université de Rennes (UR)-Institut Ecologie et Environnement - CNRS Ecologie et Environnement (INEE-CNRS) ; Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Observatoire des sciences de l'environnement de Rennes (OSERen) ; Université de Rennes (UR)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Rennes 2 (UR2)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Rennes 2 (UR2)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE) | Royal Netherlands Institute for Sea Research (NIOZ)
International audience | The impact of petroleum contamination and of burrowing macrofauna on abundances of Marinobacter and denitrifiers was tested in marine sediment mesocoms after 3 months incubation. Quantification of this genus by qPCR with a new primer set showed that the main factor favoring Marinobacter abundance was hydrocarbon amendment followed by macrofauna presence. In parallel, proportion of nosZ-harboring bacteria increased in the presence of marcrofauna. Quantitative finding were explained by physiological data from a set of 34 strains and by genomic analysis of 16 genomes spanning 15 different Marinobacter-validated species (Marinobacter hydrocarbonoclasticus, Marinobacter daeopensis, Marinobacter santoriniensis, Marinobacter pelagius, Marinobacter flavimaris, Marinobacter adhaerens, Marinobacter xestospongiae, Marinobacter algicola, Marinobacter vinifirmus, Marinobacter maritimus, Marinobacter psychrophilus, Marinobacter lipoliticus, Marinobacter manganoxydans, Marinobacter excellens, Marinobacter nanhaiticus) and 4 potential novel ones. Among the 105 organic electron donors tested in physiological analysis, Marinobacter pattern appeared narrow for almost all kinds of organic compounds except lipid ones. Strains of this set could oxidize a very large spectrum of lipids belonging to glycerolipids, branched, fatty acyls, and aromatic hydrocarbon classes. Physiological data were comforted by genomic analysis, and genes of alkane 1-monooxygenase, haloalkane dehalogenase, and flavin-binding monooxygenase were detected in most genomes. Denitrification was assessed for several strains belonging to M. hydrocarbonoclasticus, M. vinifirmus, Marinobacter maritinus, and M. pelagius species indicating the possibility to use nitrate as alternative electron acceptor. Higher occurrence of Marinobacter in the presence of petroleum appeared to be the result of a broader physiological trait allowing this genus to use lipids including hydrocarbon as principal electron donors.
Show more [+] Less [-]Substrates specialization in lipid compounds and hydrocarbons of Marinobacter genus. Full text
2015
Bonin, Patricia | Vieira, Christophe | Grimaud, Régis | Militon, Cécile | Cuny, Philippe | Lima, Oscar | Guasco, Sophie | Brussaard, Corina P D | Michotey, Valerie
International audience | The impact of petroleum contamination and of burrowing macrofauna on abundances of Marinobacter and denitrifiers was tested in marine sediment mesocoms after 3 months incubation. Quantification of this genus by qPCR with a new primer set showed that the main factor favoring Marinobacter abundance was hydrocarbon amendment followed by macrofauna presence. In parallel, proportion of nosZ-harboring bacteria increased in the presence of marcrofauna. Quantitative finding were explained by physiological data from a set of 34 strains and by genomic analysis of 16 genomes spanning 15 different Marinobacter-validated species (Marinobacter hydrocarbonoclasticus, Marinobacter daeopensis, Marinobacter santoriniensis, Marinobacter pelagius, Marinobacter flavimaris, Marinobacter adhaerens, Marinobacter xestospongiae, Marinobacter algicola, Marinobacter vinifirmus, Marinobacter maritimus, Marinobacter psychrophilus, Marinobacter lipoliticus, Marinobacter manganoxydans, Marinobacter excellens, Marinobacter nanhaiticus) and 4 potential novel ones. Among the 105 organic electron donors tested in physiological analysis, Marinobacter pattern appeared narrow for almost all kinds of organic compounds except lipid ones. Strains of this set could oxidize a very large spectrum of lipids belonging to glycerolipids, branched, fatty acyls, and aromatic hydrocarbon classes. Physiological data were comforted by genomic analysis, and genes of alkane 1-monooxygenase, haloalkane dehalogenase, and flavin-binding monooxygenase were detected in most genomes. Denitrification was assessed for several strains belonging to M. hydrocarbonoclasticus, M. vinifirmus, Marinobacter maritinus, and M. pelagius species indicating the possibility to use nitrate as alternative electron acceptor. Higher occurrence of Marinobacter in the presence of petroleum appeared to be the result of a broader physiological trait allowing this genus to use lipids including hydrocarbon as principal electron donors.
Show more [+] Less [-]Substrates specialization in lipid compounds and hydrocarbons of Marinobacter genus Full text
2015
Bonin, Patricia | Vieira, Christophe | Grimaud, Régis | Militon, Cécile | Cuny, Philippe | Lima, Oscar | Guasco, Sophie | Brussaard, Corina P. D. | Michotey, Valérie
The impact of petroleum contamination and of burrowing macrofauna on abundances of Marinobacter and denitrifiers was tested in marine sediment mesocoms after 3 months incubation. Quantification of this genus by qPCR with a new primer set showed that the main factor favoring Marinobacter abundance was hydrocarbon amendment followed by macrofauna presence. In parallel, proportion of nosZ-harboring bacteria increased in the presence of marcrofauna. Quantitative finding were explained by physiological data from a set of 34 strains and by genomic analysis of 16 genomes spanning 15 different Marinobacter-validated species (Marinobacter hydrocarbonoclasticus, Marinobacter daeopensis, Marinobacter santoriniensis, Marinobacter pelagius, Marinobacter flavimaris, Marinobacter adhaerens, Marinobacter xestospongiae, Marinobacter algicola, Marinobacter vinifirmus, Marinobacter maritimus, Marinobacter psychrophilus, Marinobacter lipoliticus, Marinobacter manganoxydans, Marinobacter excellens, Marinobacter nanhaiticus) and 4 potential novel ones. Among the 105 organic electron donors tested in physiological analysis, Marinobacter pattern appeared narrow for almost all kinds of organic compounds except lipid ones. Strains of this set could oxidize a very large spectrum of lipids belonging to glycerolipids, branched, fatty acyls, and aromatic hydrocarbon classes. Physiological data were comforted by genomic analysis, and genes of alkane 1-monooxygenase, haloalkane dehalogenase, and flavin-binding monooxygenase were detected in most genomes. Denitrification was assessed for several strains belonging to M. hydrocarbonoclasticus, M. vinifirmus, Marinobacter maritinus, and M. pelagius species indicating the possibility to use nitrate as alternative electron acceptor. Higher occurrence of Marinobacter in the presence of petroleum appeared to be the result of a broader physiological trait allowing this genus to use lipids including hydrocarbon as principal electron donors.
Show more [+] Less [-]