The major causes of the decline of the Dugong population along the urban coast of Mersing, Johor includes gill netting, subsistence hunting, habitat loss from extreme weather events that are likely to be exacerbated by climate change, humansettlement, breach of the bots and sea water pollution. In March 2017, a male Dugong dugon, estimated age of 10 to 20 years, wasincidentally found dead near Pulau Tinggi, Mersing, Johor by a fisherman. The entire body was found to have old and new scarsat the anterior part of the abdomen. The right eye was protruded out and bleeding which indicated that the eye was piercedby a sharp object. Necropsy revealed the upper small intestine and the stomach compartments were semi-impacted with a massive helminth burden (more than 1,000 nematodes). Paradujardinia halicoris worms were identified based on morphological characteristics. Zoonotic fungus named Madurella mycetomi were isolated from heart and lung after incubation for 14 days.Histologically, the lung was confirmed to have the presence of big mast cells which formed capsules, indicating presence offungal spores causing systemic mycoses where the macrophages invade and engulf the spores. The shrinkage of myocardium myocyte and myocardium necrosis with mild vasculitis indicates heart failure. Groucott’s stain confirmed Madurella mycetomi infection that induced systemic pulmonary and myocardium mycosis in Dugong dugon.