Refinar búsqueda
Resultados 1-3 de 3
Phylogenetic grouping and virulence gene profiles of Escherichia coli isolated from chicken
2017
Ramlan M. | S. Khairani Bejo | Khoo, E. | Roseliza R. | Zunita Z.
Colibacillosis is a disease caused by avian pathogenic E. coli (APEC) and is one of the principle cause of morbidity and mortality in poultry worldwide which is represented by a complex syndrome characterized by multiple organ lesions. This study was carried out to determine phylogenetic grouping and virulenceassociated genes contained by E. coli isolates which is related in causing disease in chicken. E. coli isolates obtained from clinical cases of Veterinary ResearchInstitute were re-identified by conventional methods. Phylogenetic grouping of the isolates was determined by triplex polymerase chain reaction (PCR), and the presence of eight virulence genes were identified by multiplex PCR. A total of 125 E. coli isolates were subjected toanalysis of phylogenetic background and virulence associated genes profiling. Phylogenetic analysis demonstrated that most of the E. coli isolated from chicken in this study belonged to group B1 (36.0%),group D (28.0%), group A (27.2%) and group B2 (8.8%). Multiplex PCR analysis demonstrated that 96 (78.6%) of the E. coli isolates harbored at least one virulencegene, while 29 (23.3%) did not contain any virulence genes tested. The most prevalent virulence genes identified were iss (51.2%), followed by iucD (36.0%),tsh (32.8%), vat (16.0%), astA (13.6%), irp2 (11.2%), papC (9.6%) and the least is cva/cvi gene (0%). None of the isolates harbored more than four virulence genes.Each of phylogenetic groups presented with different combinations of virulence genes, with no specific combinations of virulence genes found to correlate withE. coli phylogroups. None of the E. coli isolates harbored more than four virulence genes, suggesting that E. coli isolates from chicken in this study appear to bederived from commensal strains and may relate to environmental predispose factors especially stress factors in the host to establish infection.
Mostrar más [+] Menos [-]Investigation of the 18S rRNA gene sequence of Hepatozoon canis detected in Indian dogs
2017
Bal, M. S. | Sumbria, Deepak | Kaur, Paramjit | Singla, L. D. | Mandhotra, Ajay
Canine hepatozoonosis isa growing tick-borne disease in Punjab.Two canine hepatozoonosis cases, oneclinical and one subclinical, in Punjabwere analyzed by PCR targeting 18S rRNAgene (666 bp). After sequence analysisof the PCR products, both of them werefound almost identical to each other andwere closely related to the Hepatozooncanis strain found in Saint kitts and Nevisand Brazil with 100% (442/442) and 99%(440/442) nucleotide identity respectively.Isolates from Malta and Philippines ofH. canis were distantly related to IndianH. canis with 437/442 and 436/442 matchidentities. These results suggest that H.canis detected in north Indian dogs mighthave closer ancestral relationship with SaintKitts and Nevis followed by Brazil strain.This is the first molecular characterizationof Hepatozoon from Punjab, India.
Mostrar más [+] Menos [-]Nucleotide sequence and phylogenetic analysis of Goose Parvovirus detected from Pekin Duck
2017
Muhammad R. S. | Leow, B. L. | Basirah M. A. | Syamsiah A. S. | Ong, G. H.
Goose Parvovirus (GPV) also known as Derzy’s disease is aninfectious viral disease of waterfowl which causes serious economic loss in industrial production of geese and Muscovy ducks. In year 2014, Derzy’s disease was detected in Pekin ducks from Sarawak. The affected farm recorded up to 50% mortality, affecting only young ducklings (starting at the age of 3 weeks). Polymerase chainreaction (PCR) from liver samples were performed based on partial region of VP3 gene of GPV, generated amplicon of 801 bp. Sequence analysis showed that the isolate shared 99% sequence similaritywith goose parvovirus strain YBLJ and YZYZ20130304 from China. Phylogeny based on VP3 showed that this isolate is grouped under Asian strains. This is the first report of GPV in Malaysia focusingon the molecular analysis. Notably, this study revealed that GPV not only can be detected from goose and Muscovy but also from Pekin duck.
Mostrar más [+] Menos [-]