A two-year study was carried out in the lower part of the Palmones River to describe the role of a small dam controlling the nutrient fluxes to the estuary. Results showed an important spatial heterogeneity in the nutrient content and water properties of lowland catchment due to the effects of the small dam and the effluents of a sewage treatment work. Taking into account the values of hydraulic retention time, the dam could be considered as an optimally dimensioned pre-dam. Therefore, it removed on average more than 25% of total phosphorus (TP) while no net removal was obtained for TN during the studied period. Palmones River exported 11.3 TonsP year⁻¹ of TP and 72.1 TonsN year⁻¹ of TN to the estuary showing important seasonal differences. Less than 10% from the total amount of nutrient was exported during low flow conditions, while in four months with important flooding events, the percentage of total nitrogen exported exceeded 64%.

Many lakes in the Adirondack Mountains, New York, have acidified over the past century due to acidic atmospheric deposition. More recently, most monitored lakes have shown signs of chemical recovery (increase in acid neutralizing capacity) as sulfur deposition levels have declined in response to the Clean Air Act and other emissions control legislation. We used measured and modeled trends in past lakewater acidification and projections of future recovery from acidification to extrapolate results from judgment samples of intensively studied lakes to the population of acid-sensitive Adirondack lakes. Simulations were developed for 70 watersheds using the Model of Acidification of Groundwater in Catchments (MAGIC) to classify lakes according to their sensitivity to change in atmospheric S and N deposition. MAGIC simulations suggested that the modeled Adirondack Long-Term Monitoring Project (ALTM) and Adirondack Effects Assessment Project (AEAP) lakes were largely among the lakes in the population that had acidified most between 1850 and 1990. Most of the modeled ALTM/AEAP lakes were within the top 36% of acid sensitivity, based on model projections of past acidification and future chemical recovery, compared with the 1,829 Adirondack lakes in EPA's Environmental Monitoring and Assessment Program (EMAP) statistical frame. Results of this research will allow fuller utilization of data from on-going chemical and biological monitoring and process-level studies by providing a basis for regionalization of findings and developing/refining relationships among watershed characteristics, chemical change, and biological responses to changing levels of acidic deposition.

The assessment of greenhouse gases (GHGs) emitted to and removed from the atmosphere is high on both political and scientific agendas internationally. As increasing international concern and cooperation aim at policy-oriented solutions to the climate change problem, several issues have begun to arise regarding verification and compliance under both proposed and legislated schemes meant to reduce the human-induced global climate impact. The approaches to addressing uncertainty introduced in this article attempt to improve national inventories or to provide a basis for the standardization of inventory estimates to enable comparison of emissions and emission changes across countries. Authors of the accompanying articles use detailed uncertainty analyses to enforce the current structure of the emission trading system and attempt to internalize high levels of uncertainty by tailoring the emissions trading market rules. Assessment of uncertainty can help improve inventories and manage risk. Through recognizing the importance of, identifying and quantifying uncertainties, great strides can be made in the process of Accounting for Climate Change.

High mortality rates due to predation from fish may reduce densities of preferred prey animals. Predation may also depress the rate of recovery from environmental stress. In an alpine ecosystem damaged by acidification, we compared three different techniques of monitoring the recovery of two large species of crustaceans, the amphipod Gammarus lacustris and the notostrachan Lepidurus arcticus. The methods used were: (1): benthic littoral kick samples, (2): artificial substrate in the form of jute bags, (3): examination of brown trout stomachs. The monitoring took place in two limed lakes at the Hardangervidda mountain plateau in Central Norway, L. Svartavatn and L. Svartavasstjørni. Brown trout, Salmo trutta, is the only fish species in the lakes. Liming as a water quality improvement measure was started in 1994. All stomach samples were negative with respect to Gammarus and Lepidurus during the period 1987-1998. In 1999, the first records of both species were done in trout stomachs collected from Lake Svartavatnet. In Lake Svartavasstjørni, Lepidurus and Gammarus reappeared in fish stomachs in 2001 and 2002, respectively. During the period of monitoring, no records of these crustaceans were done in benthic samples and on artificial substrate in any of the two lakes. In an unacidified reference site, Lake Skiftesjøen, both benthic samples and the jute bags indicated a dense population of Gammarus. Our results strongly indicate that studies of fish stomachs are the best method for monitoring low-density populations of attractive fish food animals.

The long-term monitoring of precipitation and its chemical composition are important for identifying trends in rain quality and for assessing the effectiveness of pollution control strategies. A statistical test has been used to the atmospheric concentrations measured in the French rural monitoring network (MERA) in order to bring out spatio-temporal trends in precipitation quality in France over the period 1990-2003. The non-parametric Mann-Kendall test which has been developed for detecting and estimating monotonic trends in the time series was used and applied in our study at annual values of wet-only precipitation concentrations. The emission data suggest that SO₂ and NO x emissions decreased (-3.3 and -2.0% year-¹, respectively) contrary to NH₃ emissions that increased slightly (+0.2% year-¹) over the period 1990-2002 in France. On the national scale, the pH values have a significant decreasing trend of -0.025 ± 0.02 unit pH year-¹. [graphic removed] and [graphic removed] concentrations in precipitation have a significant decreasing trend, -3.0 ± 1.6 and -3.3 ± 0.6% year-¹, respectively, corresponding with the downward trends in SO₂ emissions in France (-3.3% year-¹). A good correlation (R ² = 0.84) between SO₂ emissions and [graphic removed] concentrations was obtained. The decreasing trend of [graphic removed] was more significant (-5.4 ± 5.2% year-¹) than that of [graphic removed] (-1.3 ± 2.4% year-¹). Globally, the concentration of the major ions showed a clear downward trend including marine and alkaline ions. In addition, the relative contribution of HNO₃ to acidity precipitation increased by 51% over the studied period.

Since 1983, the Ministry of the Environment of Japan has conducted nation-wide acid deposition surveys. To investigate the effects of acid deposition on surface water, we used the nonparametric Mann-Kendall test to find temporal trends in pH, alkalinity, and electrical conductivity (EC) in more than 10 years of data collected from five lakes and their catchments (Lake Kuttara: northernmost; Lake Kamakita: near Tokyo; Lake Ijira: central; Lake Banryu: western; and Lake Unagiike: southernmost). The pH of Lake Ijira water has declined slightly since the mid-1990s, corresponding with the downward trends seen in the pH and alkalinity of the river water flowing into the lake. There were significant upward trends in the EC of both the lake and stream water; the same trends were also found for [graphic removed] concentrations. These trends show evidence of acidification due to atmospheric deposition, and this is the first such finding in Japan based on significant long-term trends. Lake Ijira is located about 40 km north of the Chukyo industrial area near Nagoya. The annual depositions of H⁺, nss- [graphic removed] , and [graphic removed] in Lake Ijira were among the highest of all deposition monitoring sites, suggesting that this is the main cause of the significant acidification observed in Lake Ijira. No significant trends suggesting acidification were observed in any of the other lake catchments in spite of the significant upward trends in EC. Upward trends in pH and alkalinity at Lake Banryu and upward trends in alkalinity at Lake Kamakita were detected, but no change in pH or alkalinity at Lake Kuttara and Lake Unagiike was observed.

This study reports on the attachment preference of a faecally derived bacterium, Escherichia coli, to soil particles of defined size fractions. In a batch sorption experiment using a clay loam soil it was found that 35% of introduced E. coli cells were associated with soil particulates >2 μm diameter. Of this 35%, most of the E. coli (14%) were found to be associated with the size fraction 15-4 μm. This was attributed to the larger number of particles within this size range and its consequently greater surface area available for attachment. When results were normalised with respect to estimates of the surface area available for bacterial cell attachment to each size fraction, it was found that E. coli preferentially attached to those soil particles within the size range 30-16 μm. For soil particles >2 μm, E. coli showed at least 3.9 times more preference to associate with the 30-16 μm than any other fraction. We report that E. coli can associate with different soil particle size fractions in varying proportions and that this is likely to impact on the hydrological transfer of cells through soil and have clear implications for our wider understanding of the attachment dynamics of faecally derived bacteria in soils of different compositions.

Mercuric ions (Hg²⁺) and methylmercury are major, human-generated, toxic contaminants present in fish and our waterways. Bacteria provide a means of bioremediation by taking up these compounds and reducing them to volatile, non-toxic, elemental mercury (Hg°). Three types of mercury/methylmercury transporters have previously been identified: MerC, MerF and MerT. Each of these sets of homologues has distinct topologies. MerF proteins are characterized by a 2-transmembrane α-helical segment (TMS) topology; most MerTs have three TMSs, and MerCs have four TMSs. This report shows that MerT and MerF proteins are related by common descent and are similar in sequence throughout their first two TMSs. One of the MerF proteins is internally duplicated, generating a protein with four TMSs, while several MerT homologues bear a C-terminal extracytoplasmic Hg²⁺-binding MerP domain. MerPs are homologous to heavy metal-binding domains present in copper chaperone proteins, at the N-termini of mercuric reductases and in from one to six copies in heavy metal transporting P-type ATPases. Phylogenetic analyses reveal that mercuric ion transporters have been horizontally transferred with high frequency between bacteria. Some MerTs function with MerP receptors while others do not, and the MerP-dependent MerTs cluster separately from the MerP-independent MerTs on a phylogenetic tree. MerTs possessing a MerP appear to have co-evolved with their cognate receptors. Conserved sequence and motif analyses serve to define the mercuric transporter family fingerprints and allow prediction of specific subfunctions. This report provides the first detailed bioinformatic description of two apparently unrelated families of Hg²⁺ uptake transporters. We propose that all members of these two families function by a simple channel-type mechanism to allow influx of Hg²⁺ in response to the membrane potential in preparation for reduction and detoxification. This information should facilitate the exploitation of these transporters for purposes of microbial and phytobioremediation.

Critical loads have been used to develop international agreements on acidifying air pollution abatement, and within the UK and other countries, to develop national policies for pollution abatement. The Environment Agency (England and Wales) has regulatory obligations to protect sites of high conservation value from the threat of acidification, and hence requires a practical methodology for acidification assessments at the site-specific scale. The Environment Agency has therefore posed the question: Are the national critical load exceedance models sufficiently robust to form the basis for methods to assess harm to individual sites or are they only useful for national policy development? In order to provide one measure of the appropriateness of applying the models at the site-specific scale we incorporated estimates of uncertainty in both national and site-specific data into the calculation of critical load exceedance for individual sites. The exceedance calculations use data from a wide range of sources and the accuracy of the exceedance will be influenced by the accuracy of the input data sets. Using Monte Carlo methods to incorporate the uncertainty in the input data sets into the calculation a distribution of critical load exceedance values is generated rather than a single point estimate. This paper compares uncertainty analyses for coniferous forested sites in England and Wales using both national scale and site-specific data sets and uncertainty ranges.

Mn biogeochemistry was studied from 1994 to 2003 in a small forested catchment in the central Czech Republic using the watershed mass balance approach together with measurements of internal stores and fluxes. Mn inputs in bulk deposition were relatively constant during a period of sharply decreasing acidic deposition, suggesting that the Mn source was terrestrial, and not from fossil fuel combustion. Mn inputs in bulk deposition and Mn supplied by weathering each averaged 13 mg m-² year-¹ (26 mg m-² year-¹ total input), whereas Mn export in streamwater and groundwater averaged 43 mg m-² year-¹. Thus an additional Mn source is needed to account for 17 mg m-² year-¹. Internal fluxes and pools of Mn were significantly greater than annual inputs and outputs. Throughfall Mn flux was 70 mg m-² year-¹, litterfall Mn flux was 103 mg m-² year-¹, and Mn net uptake by vegetation was 62 mg m-² year-¹. Large pools of labile or potentially labile Mn were present in biomass and surficial soil horizons. Small leakages from these large pools likely supply the additional Mn needed to close the watershed mass balance. This leakage may reflect an adjustment of the ecosystem to recent changes in atmospheric acidity.