Long non-coding RNAs (lncRNAs) have been demonstrated to participate in plant growth and development as well as response to different biotic and abiotic stresses. However, the knowledge of lncRNA was limited in microalgae. In this study, by RNA deep sequencing, 134 lncRNAs were identified in marine Nannochloropsis oceanica in response to carbon dioxide fluctuation. Among them, there were 51 lncRNAs displayed differentially expressed between low and high CO₂ treatments, including 33 upregulation and 18 downregulation lncRNAs. Cellulose metabolic process, glucan metabolic process, polysaccharide metabolic process, and transmembrane transporter activity were functionally enriched. Multiple potential target genes of lncRNA and lncRNA-mRNA co-located gene network were analyzed. Subsequent analysis had demonstrated that lncRNAs would participate in many biological molecular processes, including gene expression, transcriptional regulation, protein expression and epigenetic regulation. In addition, alternative splicing events were firstly analyzed in response to CO₂ fluctuation. There were 2051 alternative splicing (AS events) identified, which might be associated with lncRNA. These observations will provide a novel insight into lncRNA function in Nannochloropsis and provide a series of targets for lncRNA-based gene editing in future.

Release from the sediment is an important nutrient source to the water column of global oceans, especially for marginal seas with active biogeochemical processes. Benthic nutrient biogeochemistry and its responses to environmental changes were investigated in the eastern marginal seas of China using a two-layer diffusion-advection-reaction diagenetic model. Overall, the sediment represented the primary nutrient source with fluxes of ~−342 ± 197, −1.25 ± 0.50, and −114 ± 56 × 10⁸ mol/month for dissolved inorganic nitrogen (DIN), phosphate, and silicate, respectively. This could contribute up to ~42% of nutrients requested by primary production (PP), with a DIN/SiO₃²⁻/PO₄³⁻ molar ratio of 273:91:1, which was higher than that in the overlying water (49:47:1). Future benthic nutrient fluxes were predicted under two environmental change scenarios (increasing and decreasing PP and biogenic silica). Our study may help rebuild nutrient budgets in the future and formulate environmental management policies in marginal seas.

While pollution due to nano- and micro-sized plastics (NMPs) and hypoxic conditions both occur in coastal areas, the deleterious potential of co-exposure to hypoxia and NMPs (hypoxia and micro-sized plastics, HMPs; hypoxia and nano-sized plastics, HNPs) is largely unclear. Here, we provide evidence for multigenerational effects of HMP and HNP in the marine rotifer Brachionus plicatilis by investigating changes in its life traits, antioxidant system, and hypoxia-inducible factor (HIF) pathway using an orthogonal experimental design, with nanoscale and microscale particles measuring 0.05 μm and 6.0 μm in diameter, respectively, and hypoxic conditions of 0.5 mg/L for six generations. Combined exposure to NMPs and hypoxia caused a significant decrease in fecundity and overproduction of reactive oxygen species (ROS). The HIF pathway and circadian clock genes were also significantly upregulated in response to HMP and HNP exposure. In particular, synergistic deleterious effects of HNP were evident, suggesting that size-dependent toxicity can be a major driver of the effects of hypoxia and NMP co-exposure. After several generations of exposure, ROS levels returned to basal levels and transcriptomic resilience was observed, although rotifer reproduction remained suppressed. These findings help eluciating the underlying molecular mechanisms involved in responses to plastic pollution in hypoxic conditions.

Exposure risk is assessed based on modeling suitable habitat of large pelagic fish and oil spill scenarios originating at three wells located in the western GM's deep waters. Since the fate of the oil depends on the oceanographic conditions present during the accident, as well as the magnitude and duration of the spill, which are not known a priori, the scenarios used are a statistical representation of the area in which oil spilled from the well could be found, given all possible outcomes. The ecological vulnerability assessment identified a subset of bony fish with low-medium vulnerability and elasmobranchs with medium-high vulnerability. The oiling probability and exposure risk of both bony fish and elasmobranchs hotspots vary by well analyzed. Thus, these results provide essential information for a risk management plan for the assessed species and others with economic or conservation importance distributed in the GM and worldwide.

Microplastics (MPs) are toxic pollutants, which are found ubiquitously in the marine environment. The present study aimed to assess the level of MP contamination in Vellar estuary, southeast coast of India. MP abundance in surface water and sediments ranged from 1.15 ± 0.01 to 5.14 ± 0.04 items/m³ and 24.8 ± 0.75 to 43.4 ± 0.98 particles/kg d.w., respectively. Fiber, fragment, film, pellet and glitter were present in the study area. In total, ten colors of MPs were found in the study, of which black was the most abundant. Seven polymers in sediments and four polymers in water were characterized from the study area, among which LDPE was the most dominant. Sediment texture results showed that clay particles were able to retain a greater number of MPs. This study shows that the Vellar estuary is contaminated with MPs; however, further investigation is required to classify the estuary as polluted.

The present study was carried out to determine the characteristics, distribution, and abundance of plastic debris in 25 sediment samples collected from the Poompuhar beach, southeast coast of India. The result reveals that the mean plastic debris abundance was 42 ± 27 particles/m² dry weight (dw) (1 SD, n = 25) with higher concentrations in the river mouth. The dominant shapes in the study area were fragment (70.7%), followed by fiber (20.7%), and pellet-shaped (8.6%). The dominant colors of the plastic debris were: white-colored (47%) followed by blue (28%) and green (14%). The study further reveals that the dominant polymer type was polyethylene (PE, 63.4%), followed by nylon (PA, 16.9), polyvinyl chloride (PVC, 15.5%), polypropylene (PP, 3.1%), and polystyrene (PS, 1.1%). In the study area, the main source of plastic debris was from land-based fishing and tourism activities, and rainwater runoff from the Cauvery River.

Excessive discharge of N and P pollutants results in deterioration of marine environment quality and reduction of sustainability and safety of marine ecology. Spatiotemporal variations characteristics and sources of N and P pollutants were determined based on the long-term monitoring data in Liaodong Bay. Results indicated that an evident spatiotemporal variation was investigated for nutrients. The highest concentrations of NH₃-N, NO₂-N, NO₃-N and PO₄-P were in spring (25.32 μg/L), summer (20.67 μg/L) and autumn (222.07 μg/L, 11.08 μg/L), respectively. The hot-spots of pollutants were mainly concentrated in estuarine and aquaculture areas. The hot spot of PO₄-P gradually extended to the middle of Liaodong Bay in autumn. In addition, pollution sources in each marine functional zone were different, the main pollution source was aquaculture wastewater, river input, domestic sewage. This study provided reasonable suggestions for effectively reducing N and P pollution in Liaodong Bay, and elsewhere.

The ‘taxonomic sufficiency’ (TS) approach has been applied to algae, protists, invertebrates, and vertebrates, generally by aggregating species-level abundance data to a higher taxonomic level, where genus-level data are often highly correlated with species-level data and are a valid proxy level. The TS approach offers the possibility of a comparison of data from different geographical areas and highlights the effects of contaminants. The TS approach is stable in the face of different researchers and in the comparison of long-term biological survey data. The effectiveness of the TS approach may increase with increasing environmental gradients or spatial area. The TS approach should be avoided when the spatial area is small and small differences in species-level data are considered important, so as not to cancel out the distribution patterns specific to the local environment of the biological taxa.

Polycyclic aromatic hydrocarbons (PAHs) most likely derived from natural sources were observed in two sediment cores covering the last 100 years in an Amazon estuarine region. A considerable change in the PAHs main source was observed in the 1960s. Before the 1960s, the sources of PAHs seem to be related to biogenic and/or early-diagenetic processes. Concentrations of perylene were higher before the 1960s and suggest that its primary source to the sediments in the Amazon region is linked to a short-term diagenetic transformation of their biogenic precursors. The natural formation of alkylated PAHs in sediments was linked to the methylation of the parental aromatic hydrocarbons due to sediment maturation processes and the dehydrogenation of sterols in the sediments. The relatively rapid reaction occurring in recent sediments of the Amazon region suggests the importance of the microbial community in the transformation of biogenic precursors to alkylated-PAHs in the sediments.