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Environmental microbiology as a mosaic of explored ecosystems and issues Texte intégral
2015
Faure, Denis | Bonin, Patricia | Duran, Robert | Amato, Pierre | Arsene-Ploetze, Florence | Auguet, Jean-Christophe | Legrand, Bernard | Bertin, Philippe, N. | Bettarel, Yvan | Bigot-Clivot, Aurélie | Blot, Nicolas | Blouin, Manuel | Bormans, Myriam | Bouvy, Marc | Bruneel, Odile | Cébron, Aurélie | Christaki, Urania | Couée, Ivan | Cravo-Laureau, Cristiana | Danger, Michael | de Lorgeril, Julien | Desdevises, Yves | Dessaux, Yves | Destoumieux-Garzon, Delphine | Duprat, Élodie | Erauso, Gaël | Haichar, Feth El Zahar | Fouilland, Éric | Francez, Andre-Jean | Fromin, Nathalie | Geffard, Alain | Ghiglione, Jean-François | Huguet, Arnaud | Grossi, Vincent | Guizien, Katell | Jardillier, Ludwig | Jouquet, Pascal | Joux, Fabien | Kaisermann, Aurore | Kaltz, Oliver | Lata, Jean-Christophe | Lecerf, Antoine | Leyval, Corinne | Luis, Patricia | Masseret, Estelle | Niboyet, Audrey | Normand, Philippe | Plewniak, Frédéric | Poly, Franck | Prado, Soizic | Quaiser, Achim | Ratet, Pascal | Richaume, Agnès | Rolland, Jean-Luc | Rols, Jean-Luc | Rontani, Jf | Rossi, Francesca | Sablé, Sophie | Sivadon, P | Soudant, Philippe | Tamburini, Christian | Tribollet, Aline | Valiente Moro, Claire | van Wambeke, France | Vandenkoornhuyse, Philippe | Vuilleumier, Stéphane | Institut de Biologie Intégrative de la Cellule (I2BC) ; Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS) | Institut méditerranéen d'océanologie (MIO) ; Institut de Recherche pour le Développement (IRD)-Aix Marseille Université (AMU)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Toulon (UTLN)-Centre National de la Recherche Scientifique (CNRS) | Institut des sciences analytiques et de physico-chimie pour l'environnement et les materiaux (IPREM) ; Université de Pau et des Pays de l'Adour (UPPA)-Institut de Chimie - CNRS Chimie (INC-CNRS)-Centre National de la Recherche Scientifique (CNRS) | Institut de Chimie de Clermont-Ferrand (ICCF) ; SIGMA Clermont (SIGMA Clermont)-Institut de Chimie - CNRS Chimie (INC-CNRS)-Université Clermont Auvergne [2017-2020] (UCA [2017-2020])-Centre National de la Recherche Scientifique (CNRS) | Génétique moléculaire, génomique, microbiologie (GMGM) ; Université de Strasbourg (UNISTRA)-Centre National de la Recherche Scientifique (CNRS) | Ecologie des systèmes marins côtiers (Ecosym) ; Université Montpellier 1 (UM1)-Université Montpellier 2 - Sciences et Techniques (UM2)-Institut Français de Recherche pour l'Exploitation de la Mer (IFREMER)-Centre National de la Recherche Scientifique (CNRS) | Agroécologie [Dijon] ; Institut National de la Recherche Agronomique (INRA)-Université de Bourgogne (UB)-AgroSup Dijon - Institut National Supérieur des Sciences Agronomiques, de l'Alimentation et de l'Environnement | Ecosystèmes, biodiversité, évolution [Rennes] (ECOBIO) ; Université de Rennes (UR)-Institut Ecologie et Environnement - CNRS Ecologie et Environnement (INEE-CNRS) ; Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS) | Laboratoire d’Océanologie et de Géosciences (LOG) - UMR 8187 (LOG) ; Institut national des sciences de l'Univers (INSU - CNRS)-Université du Littoral Côte d'Opale (ULCO)-Université de Lille-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD [Ile-de-France]) | Université du Littoral Côte d'Opale (ULCO) | Laboratoire d'Ecologie Microbienne - UMR 5557 (LEM) ; Institut National de la Recherche Agronomique (INRA)-Université Claude Bernard Lyon 1 (UCBL) ; Université de Lyon-Université de Lyon-Ecole Nationale Vétérinaire de Lyon (ENVL)-VetAgro Sup - Institut national d'enseignement supérieur et de recherche en alimentation, santé animale, sciences agronomiques et de l'environnement (VAS)-Centre National de la Recherche Scientifique (CNRS) | Centre d’Ecologie Fonctionnelle et Evolutive (CEFE) ; Université Paul-Valéry - Montpellier 3 (UPVM)-Institut National de la Recherche Agronomique (INRA)-Centre international d'études supérieures en sciences agronomiques (Montpellier SupAgro)-École Pratique des Hautes Études (EPHE) ; Université Paris Sciences et Lettres (PSL)-Université Paris Sciences et Lettres (PSL)-Université de Montpellier (UM)-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD [Occitanie])-Institut national d’études supérieures agronomiques de Montpellier (Montpellier SupAgro) | Laboratoire de Géologie de Lyon - Terre, Planètes, Environnement (LGL-TPE) ; École normale supérieure de Lyon (ENS de Lyon) ; Université de Lyon-Université de Lyon-Université Claude Bernard Lyon 1 (UCBL) ; Université de Lyon-Institut national des sciences de l'Univers (INSU - CNRS)-Université Jean Monnet - Saint-Étienne (UJM)-Centre National de la Recherche Scientifique (CNRS) | Laboratoire d'Ecogéochimie des environnements benthiques (LECOB) ; Observatoire océanologique de Banyuls (OOB) ; Université Pierre et Marie Curie - Paris 6 (UPMC)-Centre National de la Recherche Scientifique (CNRS)-Université Pierre et Marie Curie - Paris 6 (UPMC)-Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS) | AgroParisTech | Institut d'écologie et des sciences de l'environnement de Paris (iEES Paris) ; Institut de Recherche pour le Développement (IRD)-Sorbonne Université (SU)-Université Paris-Est Créteil Val-de-Marne - Paris 12 (UPEC UP12)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE) | LIttoral ENvironnement et Sociétés (LIENSs) ; Institut national des sciences de l'Univers (INSU - CNRS)-La Rochelle Université (ULR)-Centre National de la Recherche Scientifique (CNRS) | Laboratoire des Sciences de l'Environnement Marin (LEMAR) (LEMAR) ; Institut de Recherche pour le Développement (IRD)-Institut Français de Recherche pour l'Exploitation de la Mer (IFREMER)-Université de Brest (UBO)-Centre National de la Recherche Scientifique (CNRS) | Biogéochimie-Traceurs-Paléoclimat (BTP) ; Laboratoire d'Océanographie et du Climat : Expérimentations et Approches Numériques (LOCEAN) ; Institut Pierre-Simon-Laplace (IPSL) ; École normale supérieure - Paris (ENS-PSL) ; Université Paris Sciences et Lettres (PSL)-Université Paris Sciences et Lettres (PSL)-Université de Versailles Saint-Quentin-en-Yvelines (UVSQ)-Université Pierre et Marie Curie - Paris 6 (UPMC)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Institut national des sciences de l'Univers (INSU - CNRS)-École polytechnique (X) ; Institut Polytechnique de Paris (IP Paris)-Institut Polytechnique de Paris (IP Paris)-Centre National d'Études Spatiales [Toulouse] (CNES)-Centre National de la Recherche Scientifique (CNRS)-École normale supérieure - Paris (ENS-PSL) ; Université Paris Sciences et Lettres (PSL)-Université Paris Sciences et Lettres (PSL)-Université de Versailles Saint-Quentin-en-Yvelines (UVSQ)-Université Pierre et Marie Curie - Paris 6 (UPMC)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Institut national des sciences de l'Univers (INSU - CNRS)-École polytechnique (X) ; Institut Polytechnique de Paris (IP Paris)-Institut Polytechnique de Paris (IP Paris)-Centre National d'Études Spatiales [Toulouse] (CNES)-Centre National de la Recherche Scientifique (CNRS)-Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Université Pierre et Marie Curie - Paris 6 (UPMC)-Centre National de la Recherche Scientifique (CNRS)-Institut Pierre-Simon-Laplace (IPSL) ; École normale supérieure - Paris (ENS-PSL) ; Université Paris Sciences et Lettres (PSL)-Université Paris Sciences et Lettres (PSL)-Université de Versailles Saint-Quentin-en-Yvelines (UVSQ)-Université Pierre et Marie Curie - Paris 6 (UPMC)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Institut national des sciences de l'Univers (INSU - CNRS)-École polytechnique (X) ; Institut Polytechnique de Paris (IP Paris)-Institut Polytechnique de Paris (IP Paris)-Centre National d'Études Spatiales [Toulouse] (CNES)-Centre National de la Recherche Scientifique (CNRS)-École normale supérieure - Paris (ENS-PSL) ; Université Paris Sciences et Lettres (PSL)-Université Paris Sciences et Lettres (PSL)-Université de Versailles Saint-Quentin-en-Yvelines (UVSQ)-Université Pierre et Marie Curie - Paris 6 (UPMC)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Institut national des sciences de l'Univers (INSU - CNRS)-École polytechnique (X) ; Institut Polytechnique de Paris (IP Paris)-Institut Polytechnique de Paris (IP Paris)-Centre National d'Études Spatiales [Toulouse] (CNES)-Centre National de la Recherche Scientifique (CNRS)-Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Université Pierre et Marie Curie - Paris 6 (UPMC)-Centre National de la Recherche Scientifique (CNRS) | CNRS Mission pour l'Interdisciplinarite; Incentive Action Ecosphere Continentale et Cotiere (EC2CO) | Ecosphère Continentale et Côtière (EC2CO)
Environmental microbiology as a mosaic of explored ecosystems and issues Texte intégral
2015
Faure, Denis | Bonin, Patricia | Duran, Robert | Amato, Pierre | Arsene-Ploetze, Florence | Auguet, Jean-Christophe | Legrand, Bernard | Bertin, Philippe, N. | Bettarel, Yvan | Bigot-Clivot, Aurélie | Blot, Nicolas | Blouin, Manuel | Bormans, Myriam | Bouvy, Marc | Bruneel, Odile | Cébron, Aurélie | Christaki, Urania | Couée, Ivan | Cravo-Laureau, Cristiana | Danger, Michael | de Lorgeril, Julien | Desdevises, Yves | Dessaux, Yves | Destoumieux-Garzon, Delphine | Duprat, Élodie | Erauso, Gaël | Haichar, Feth El Zahar | Fouilland, Éric | Francez, Andre-Jean | Fromin, Nathalie | Geffard, Alain | Ghiglione, Jean-François | Huguet, Arnaud | Grossi, Vincent | Guizien, Katell | Jardillier, Ludwig | Jouquet, Pascal | Joux, Fabien | Kaisermann, Aurore | Kaltz, Oliver | Lata, Jean-Christophe | Lecerf, Antoine | Leyval, Corinne | Luis, Patricia | Masseret, Estelle | Niboyet, Audrey | Normand, Philippe | Plewniak, Frédéric | Poly, Franck | Prado, Soizic | Quaiser, Achim | Ratet, Pascal | Richaume, Agnès | Rolland, Jean-Luc | Rols, Jean-Luc | Rontani, Jf | Rossi, Francesca | Sablé, Sophie | Sivadon, P | Soudant, Philippe | Tamburini, Christian | Tribollet, Aline | Valiente Moro, Claire | van Wambeke, France | Vandenkoornhuyse, Philippe | Vuilleumier, Stéphane | Institut de Biologie Intégrative de la Cellule (I2BC) ; Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS) | Institut méditerranéen d'océanologie (MIO) ; Institut de Recherche pour le Développement (IRD)-Aix Marseille Université (AMU)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Toulon (UTLN)-Centre National de la Recherche Scientifique (CNRS) | Institut des sciences analytiques et de physico-chimie pour l'environnement et les materiaux (IPREM) ; Université de Pau et des Pays de l'Adour (UPPA)-Institut de Chimie - CNRS Chimie (INC-CNRS)-Centre National de la Recherche Scientifique (CNRS) | Institut de Chimie de Clermont-Ferrand (ICCF) ; SIGMA Clermont (SIGMA Clermont)-Institut de Chimie - CNRS Chimie (INC-CNRS)-Université Clermont Auvergne [2017-2020] (UCA [2017-2020])-Centre National de la Recherche Scientifique (CNRS) | Génétique moléculaire, génomique, microbiologie (GMGM) ; Université de Strasbourg (UNISTRA)-Centre National de la Recherche Scientifique (CNRS) | Ecologie des systèmes marins côtiers (Ecosym) ; Université Montpellier 1 (UM1)-Université Montpellier 2 - Sciences et Techniques (UM2)-Institut Français de Recherche pour l'Exploitation de la Mer (IFREMER)-Centre National de la Recherche Scientifique (CNRS) | Agroécologie [Dijon] ; Institut National de la Recherche Agronomique (INRA)-Université de Bourgogne (UB)-AgroSup Dijon - Institut National Supérieur des Sciences Agronomiques, de l'Alimentation et de l'Environnement | Ecosystèmes, biodiversité, évolution [Rennes] (ECOBIO) ; Université de Rennes (UR)-Institut Ecologie et Environnement - CNRS Ecologie et Environnement (INEE-CNRS) ; Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS) | Laboratoire d’Océanologie et de Géosciences (LOG) - UMR 8187 (LOG) ; Institut national des sciences de l'Univers (INSU - CNRS)-Université du Littoral Côte d'Opale (ULCO)-Université de Lille-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD [Ile-de-France]) | Université du Littoral Côte d'Opale (ULCO) | Laboratoire d'Ecologie Microbienne - UMR 5557 (LEM) ; Institut National de la Recherche Agronomique (INRA)-Université Claude Bernard Lyon 1 (UCBL) ; Université de Lyon-Université de Lyon-Ecole Nationale Vétérinaire de Lyon (ENVL)-VetAgro Sup - Institut national d'enseignement supérieur et de recherche en alimentation, santé animale, sciences agronomiques et de l'environnement (VAS)-Centre National de la Recherche Scientifique (CNRS) | Centre d’Ecologie Fonctionnelle et Evolutive (CEFE) ; Université Paul-Valéry - Montpellier 3 (UPVM)-Institut National de la Recherche Agronomique (INRA)-Centre international d'études supérieures en sciences agronomiques (Montpellier SupAgro)-École Pratique des Hautes Études (EPHE) ; Université Paris Sciences et Lettres (PSL)-Université Paris Sciences et Lettres (PSL)-Université de Montpellier (UM)-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD [Occitanie])-Institut national d’études supérieures agronomiques de Montpellier (Montpellier SupAgro) | Laboratoire de Géologie de Lyon - Terre, Planètes, Environnement (LGL-TPE) ; École normale supérieure de Lyon (ENS de Lyon) ; Université de Lyon-Université de Lyon-Université Claude Bernard Lyon 1 (UCBL) ; Université de Lyon-Institut national des sciences de l'Univers (INSU - CNRS)-Université Jean Monnet - Saint-Étienne (UJM)-Centre National de la Recherche Scientifique (CNRS) | Laboratoire d'Ecogéochimie des environnements benthiques (LECOB) ; Observatoire océanologique de Banyuls (OOB) ; Université Pierre et Marie Curie - Paris 6 (UPMC)-Centre National de la Recherche Scientifique (CNRS)-Université Pierre et Marie Curie - Paris 6 (UPMC)-Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS) | AgroParisTech | Institut d'écologie et des sciences de l'environnement de Paris (iEES Paris) ; Institut de Recherche pour le Développement (IRD)-Sorbonne Université (SU)-Université Paris-Est Créteil Val-de-Marne - Paris 12 (UPEC UP12)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE) | LIttoral ENvironnement et Sociétés (LIENSs) ; Institut national des sciences de l'Univers (INSU - CNRS)-La Rochelle Université (ULR)-Centre National de la Recherche Scientifique (CNRS) | Laboratoire des Sciences de l'Environnement Marin (LEMAR) (LEMAR) ; Institut de Recherche pour le Développement (IRD)-Institut Français de Recherche pour l'Exploitation de la Mer (IFREMER)-Université de Brest (UBO)-Centre National de la Recherche Scientifique (CNRS) | Biogéochimie-Traceurs-Paléoclimat (BTP) ; Laboratoire d'Océanographie et du Climat : Expérimentations et Approches Numériques (LOCEAN) ; Institut Pierre-Simon-Laplace (IPSL) ; École normale supérieure - Paris (ENS-PSL) ; Université Paris Sciences et Lettres (PSL)-Université Paris Sciences et Lettres (PSL)-Université de Versailles Saint-Quentin-en-Yvelines (UVSQ)-Université Pierre et Marie Curie - Paris 6 (UPMC)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Institut national des sciences de l'Univers (INSU - CNRS)-École polytechnique (X) ; Institut Polytechnique de Paris (IP Paris)-Institut Polytechnique de Paris (IP Paris)-Centre National d'Études Spatiales [Toulouse] (CNES)-Centre National de la Recherche Scientifique (CNRS)-École normale supérieure - Paris (ENS-PSL) ; Université Paris Sciences et Lettres (PSL)-Université Paris Sciences et Lettres (PSL)-Université de Versailles Saint-Quentin-en-Yvelines (UVSQ)-Université Pierre et Marie Curie - Paris 6 (UPMC)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Institut national des sciences de l'Univers (INSU - CNRS)-École polytechnique (X) ; Institut Polytechnique de Paris (IP Paris)-Institut Polytechnique de Paris (IP Paris)-Centre National d'Études Spatiales [Toulouse] (CNES)-Centre National de la Recherche Scientifique (CNRS)-Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Université Pierre et Marie Curie - Paris 6 (UPMC)-Centre National de la Recherche Scientifique (CNRS)-Institut Pierre-Simon-Laplace (IPSL) ; École normale supérieure - Paris (ENS-PSL) ; Université Paris Sciences et Lettres (PSL)-Université Paris Sciences et Lettres (PSL)-Université de Versailles Saint-Quentin-en-Yvelines (UVSQ)-Université Pierre et Marie Curie - Paris 6 (UPMC)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Institut national des sciences de l'Univers (INSU - CNRS)-École polytechnique (X) ; Institut Polytechnique de Paris (IP Paris)-Institut Polytechnique de Paris (IP Paris)-Centre National d'Études Spatiales [Toulouse] (CNES)-Centre National de la Recherche Scientifique (CNRS)-École normale supérieure - Paris (ENS-PSL) ; Université Paris Sciences et Lettres (PSL)-Université Paris Sciences et Lettres (PSL)-Université de Versailles Saint-Quentin-en-Yvelines (UVSQ)-Université Pierre et Marie Curie - Paris 6 (UPMC)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Institut national des sciences de l'Univers (INSU - CNRS)-École polytechnique (X) ; Institut Polytechnique de Paris (IP Paris)-Institut Polytechnique de Paris (IP Paris)-Centre National d'Études Spatiales [Toulouse] (CNES)-Centre National de la Recherche Scientifique (CNRS)-Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Université Pierre et Marie Curie - Paris 6 (UPMC)-Centre National de la Recherche Scientifique (CNRS) | CNRS Mission pour l'Interdisciplinarite; Incentive Action Ecosphere Continentale et Cotiere (EC2CO) | Ecosphère Continentale et Côtière (EC2CO)
International audience | Microbes are phylogenetically (Archaea, Bacteria, Eukarya, and viruses) and functionally diverse. They colonize highly varied environments and rapidly respond to and evolve as a response to local and global environmental changes, including those induced by pollutants resulting from human activities. This review exemplifies the Microbial Ecology EC2CO consortium’s efforts to explore the biology, ecology, diversity, and roles of microbes in aquatic and continental ecosystems.
Afficher plus [+] Moins [-]Environmental microbiology as a mosaic of explored ecosystems and issues Texte intégral
2015
Faure, Denis | Bonin, Patricia | Duran, Robert
Microbes are phylogenetically (Archaea, Bacteria, Eukarya, and viruses) and functionally diverse. They colonize highly varied environments and rapidly respond to and evolve as a response to local and global environmental changes, including those induced by pollutants resulting from human activities. This review exemplifies the Microbial Ecology EC2CO consortium’s efforts to explore the biology, ecology, diversity, and roles of microbes in aquatic and continental ecosystems.
Afficher plus [+] Moins [-]Environmental microbiology as a mosaic of explored ecosystems and issues Texte intégral
2015
Faure, Denis | Bonin, Patricia | Duran, Robert | Amato, Pierre | Arsene-Ploetze, Florence | Auguet, Jean-Christophe | Legrand, Bernard | Bertin, Philippe N. | Bettarel, Yvan | BIGOT-CLIVOT, Aurélie | Blot, Nicolas | BLOUIN, Manuel | Bormans, Myriam | Bouvy, Marc | Bruneel, O | Cébron, Aurélie | Christaki, Urania | Couée, Ivan | Cravo-Laureau, Cristiana | Danger, Michael | De Lorgeril, Julien | Desdevises, Yves | Dessaux, Yves | Destoumieux-Garzón, D | Duprat, Élodie | Erauso, Gaël | Haichar, Feth El Zahar | Fouilland, Éric | Francez, Andre-Jean | Fromin, Nathalie | Geffard, Alain | Ghiglione, Jean-François | Huguet, Arnaud | Grossi, Vincent | Guizien, Katell | Jardillier, Ludwig | Jouquet, Pascal | Joux, Fabien | Kaisermann, Aurore | Kaltz, Oliver | Lata, Jean-Christophe | Lecerf, Antoine | Leyval, Corinne | Luis, Patricia | Masseret, Estelle | NIBOYET, Audrey | Normand, Philippe | Plewniak, Frédéric | Poly, Franck | Prado, Soizic | Quaiser, Achim | Ratet, Pascal | Richaume, Agnès | Rolland, Jean-Luc | Rols, Jean-Luc | Rontani, JF | Rossi, Francesca | Sablé, Sophie | Sivadon, P | Soudant, Philippe | Tamburini, Christian | Tribollet, Aline | Valiente Moro, Claire | Van Wambeke, France | Vandenkoornhuyse , Philippe | Vuilleumier, Stéphane | Vandenkoornhuyse, Philippe
Microbes are phylogenetically (Archaea, Bacteria, Eukarya, and viruses) and functionally diverse. They colonize highly varied environments and rapidly respond to and evolve as a response to local and global environmental changes, including those induced by pollutants resulting from human activities. This review exemplifies the Microbial Ecology EC2CO consortium’s efforts to explore the biology, ecology, diversity, and roles of microbes in aquatic and continental ecosystems.
Afficher plus [+] Moins [-]Conclusions of the Worldwide Integrated Assessment on the risks of neonicotinoids and fipronil to biodiversity and ecosystem functioning Texte intégral
2015
van Der Sluijs, J. P. | Amaral-Rogers, V. | Belzunces, L.P. | Bijleveld van Lexmond, M. F. I. J. | Bonmatin, J-M. | Chagnon, M. | Downs, C. A. | Furlan, L. | Gibbons, D. W. | Giorio, C. | Girolami, V. | Goulson, D. | Kreutzweiser, D. P. | Krupke, C. | Liess, M. | Long, E. | Mcfield, M. | Mineau, P. | Mitchell, E. A. D. | Morrissey, C. A. | Noome, D. A. | Pisa, L. | Settele, J. | Simon-Delso, N. | Stark, J. D. | Tapparo, A. | van Dyck, H. | van Praagh, J. | Whitehorn, P. R. | Wiemers, M. | Copernicus Institute of Sustainable Development [Utrecht] ; Universiteit Utrecht / Utrecht University [Utrecht] | Buglife | Abeilles et environnement (AE) ; Institut National de la Recherche Agronomique (INRA) | Centre de biophysique moléculaire (CBM - UPR 4301) ; Université d'Orléans (UO)-Université de Tours (UT)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Institut de Chimie - CNRS Chimie (INC-CNRS)-Centre National de la Recherche Scientifique (CNRS) | Beekeeping Research and Information Center
Conclusions of the Worldwide Integrated Assessment on the risks of neonicotinoids and fipronil to biodiversity and ecosystem functioning Texte intégral
2015
van Der Sluijs, J. P. | Amaral-Rogers, V. | Belzunces, L.P. | Bijleveld van Lexmond, M. F. I. J. | Bonmatin, J-M. | Chagnon, M. | Downs, C. A. | Furlan, L. | Gibbons, D. W. | Giorio, C. | Girolami, V. | Goulson, D. | Kreutzweiser, D. P. | Krupke, C. | Liess, M. | Long, E. | Mcfield, M. | Mineau, P. | Mitchell, E. A. D. | Morrissey, C. A. | Noome, D. A. | Pisa, L. | Settele, J. | Simon-Delso, N. | Stark, J. D. | Tapparo, A. | van Dyck, H. | van Praagh, J. | Whitehorn, P. R. | Wiemers, M. | Copernicus Institute of Sustainable Development [Utrecht] ; Universiteit Utrecht / Utrecht University [Utrecht] | Buglife | Abeilles et environnement (AE) ; Institut National de la Recherche Agronomique (INRA) | Centre de biophysique moléculaire (CBM - UPR 4301) ; Université d'Orléans (UO)-Université de Tours (UT)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Institut de Chimie - CNRS Chimie (INC-CNRS)-Centre National de la Recherche Scientifique (CNRS) | Beekeeping Research and Information Center
International audience | The side effects of the current global use of pesticides on wildlife, particularly at higher levels of biological organization : populations, communities and ecosystems, are poorly understood (Köhler and Triebskorn 2013). Here, we focus on one of the problematic groups of agrochemicals, the systemic insecticides fipronil and those of the neonicotinoid family. The increasing global reliance on the partly prophylactic use of these persistent and potent neurotoxic systemic insecticides has raised concerns about their impacts on biodiversity, ecosystem functioning and ecosystem services provided by a wide range of affected species and environments. The present scale of use, combined with the properties of these compounds, has resulted in widespread contamination of agricultural soils, freshwater resources, wetlands, non-target vegetation and estuarine and coastal marine systems, which means that many organisms inhabiting these habitats are being repeatedly and chronically expose.
Afficher plus [+] Moins [-]Conclusions of the Worldwide Integrated Assessment on the risks of neonicotinoids and fipronil to biodiversity and ecosystem functioning Texte intégral
2014
van der Sluijs, Jeroen P | Amaral-Rogers, Vanessa | Belzunces, Luc P | Bijleveld van Lexmond, Maarten F I J | Bonmatin, Jean-Marc | Chagnon, Madeleine | Downs, Craig | Furlan, Lorenzo | Gibbons, David W | Giorio, Chiara | Girolami, Vincenzo | Goulson, Dave | Kreutzweiser, David P | Krupke, Christian H | Whitehorn, Penelope R | Utrecht University | Buglife | French National Institute for Agricultural Research (INRA) | Independent | The National Center for Scientific Research (CNRS) | University of Quebec in Montreal (UQAM) | Haereticus Environmental Laboratory | Veneto Agricoltura | Royal Society for the Protection of Birds (RSPB) | University of Cambridge | University of Padua | University of Sussex | Natural Resources Canada | Purdue University | Biological and Environmental Sciences | 0000-0001-9852-1012
Additional co-authors: M. Liess, E. Long, M. McField, P. Mineau, E. A. D. Mitchell, C. A. Morrissey, D. A. Noome, L. Pisa, J. Settele, N. Simon-Delso, J. D. Stark, A. Tapparo, H. Van Dyck, J. van Praagh, M. Wiemers
Afficher plus [+] Moins [-]Assessment of palladium footprint from road traffic in two highway environments Texte intégral
2015
Clement, Nathalie | Muresan, Bogdan | Hedde, Mickael | Francois, Denis | Environnement, Aménagement, Sécurité et Eco-conception (IFSTTAR/AME/EASE) ; Institut Français des Sciences et Technologies des Transports, de l'Aménagement et des Réseaux (IFSTTAR)-PRES Université Nantes Angers Le Mans (UNAM) | Ecologie fonctionnelle et écotoxicologie des agroécosystèmes (ECOSYS) ; Institut National de la Recherche Agronomique (INRA)-AgroParisTech
Assessment of palladium footprint from road traffic in two highway environments Texte intégral
2015
Clement, Nathalie | Muresan, Bogdan | Hedde, Mickael | Francois, Denis | Environnement, Aménagement, Sécurité et Eco-conception (IFSTTAR/AME/EASE) ; Institut Français des Sciences et Technologies des Transports, de l'Aménagement et des Réseaux (IFSTTAR)-PRES Université Nantes Angers Le Mans (UNAM) | Ecologie fonctionnelle et écotoxicologie des agroécosystèmes (ECOSYS) ; Institut National de la Recherche Agronomique (INRA)-AgroParisTech
Avec les remerciements à Jodie Thénard | Palladium (Pd) is an emerging eco-toxic pollutant from vehicle catalytic converters, emitted worldwide for more than 2 decades. Nowadays, the spatial extent of Pd fallout is growing along roads, but its subsequent fate in neighboring terrestrial ecosystems has not been extensively addressed yet. Two sites representative of contrasted natural environments (field, forest) but located under similar ambient conditions were selected to isolate and analyze the specific impact of vehicular Pd, along highway A71, France. Pd impregnation was assessed along 200 m-long transects perpendicular to the highway. Contents were measured in soils, earthworms, plant communities of the right-of-way (ROW) and the neighboring field (crop weeds), as well as in a moss, and bramble and ivy leaves in the forest. The direct impact of Pd fallouts appears to be confined in the grassy verge of the highway: ROW soils ([Pd] = 52-65 ng.g-1); earthworms ([Pd] = 18-38 ng.g-1); plant community ([Pd] = 10-23 ng.g-1). Pd footprint is pointed out by the accumulation index calculated for earthworms and plant communities even though transfer coefficients indicate the absence of bio-accumulation (TCs < 1). An indirect longer range transfer of Pd is identified, induced by hydric transport of organic matter.
Afficher plus [+] Moins [-]Assessment of palladium footprint from road traffic in two highway environments Texte intégral
2015
Clement, N. | Muresan, B. | Hedde, M. | François, D.
Palladium (Pd) is an emerging eco-toxic pollutant from vehicle catalytic converters, emitted worldwide for more than two decades. Nowadays, the spatial extent of Pd fallout is growing along roads, but its subsequent fate in neighboring terrestrial ecosystems has not been extensively addressed yet. Two sites representative of contrasted natural environments (field, forest) but located under similar ambient conditions were selected to isolate and analyze the specific impact of vehicular Pd, along highway A71, France. Pd impregnation was assessed along 200-m-long transects perpendicular to the highway. Contents were measured in soils, earthworms, plant communities of the right of way (ROW), and the neighboring field (crop weeds), as well as in a moss, and bramble and ivy leaves in the forest. The direct impact of Pd fallouts appears to be confined in the grassy verge of the highway: ROW soils ([Pd] = 52–65 ng g⁻¹), earthworms ([Pd] = 18–38 ng g⁻¹), and plant community ([Pd] = 10–23 ng g⁻¹). Pd footprint is pointed out by the accumulation index calculated for earthworms and plant communities even though transfer coefficients indicate the absence of bioaccumulation (TCs < 1). An indirect longer range transfer of Pd is identified, induced by hydric transport of organic matter.
Afficher plus [+] Moins [-]Assessment of palladium footprint from road traffic in two highway environments Texte intégral
2015
Clement, Nathalie | Muresan, Bogdan | Hedde, Mickael | Francois, Denis | Environnement, Aménagement, Sécurité et Eco-conception (IFSTTAR/AME/EASE) ; Institut Français des Sciences et Technologies des Transports, de l'Aménagement et des Réseaux (IFSTTAR)-PRES Université Nantes Angers Le Mans (UNAM) | Ecologie fonctionnelle et écotoxicologie des agroécosystèmes (ECOSYS) ; Institut National de la Recherche Agronomique (INRA)-AgroParisTech
Avec les remerciements à Jodie Thénard | Palladium (Pd) is an emerging eco-toxic pollutant from vehicle catalytic converters, emitted worldwide for more than 2 decades. Nowadays, the spatial extent of Pd fallout is growing along roads, but its subsequent fate in neighboring terrestrial ecosystems has not been extensively addressed yet. Two sites representative of contrasted natural environments (field, forest) but located under similar ambient conditions were selected to isolate and analyze the specific impact of vehicular Pd, along highway A71, France. Pd impregnation was assessed along 200 m-long transects perpendicular to the highway. Contents were measured in soils, earthworms, plant communities of the right-of-way (ROW) and the neighboring field (crop weeds), as well as in a moss, and bramble and ivy leaves in the forest. The direct impact of Pd fallouts appears to be confined in the grassy verge of the highway: ROW soils ([Pd] = 52-65 ng.g-1); earthworms ([Pd] = 18-38 ng.g-1); plant community ([Pd] = 10-23 ng.g-1). Pd footprint is pointed out by the accumulation index calculated for earthworms and plant communities even though transfer coefficients indicate the absence of bio-accumulation (TCs < 1). An indirect longer range transfer of Pd is identified, induced by hydric transport of organic matter.
Afficher plus [+] Moins [-]Transfer of metal(loid)s in a small vineyard catchment: contribution of dissolved and particulate fractions in river for contrasted hydrological conditions | Transfert des métaux/métalloides dans un petit bassin versant viticole : contribution des fractions dissoutes et particulaires dans la rivière dans des conditions hydrologiques contrastées Texte intégral
2015
Rabiet, Marie-Josèphe | Coquery, Marina | Carluer, Nadia | Gahou, J. | Gouy, Véronique | Milieux aquatiques, écologie et pollutions (UR MALY) ; Institut national de recherche en sciences et technologies pour l'environnement et l'agriculture (IRSTEA)
Transfer of metal(loid)s in a small vineyard catchment: contribution of dissolved and particulate fractions in river for contrasted hydrological conditions | Transfert des métaux/métalloides dans un petit bassin versant viticole : contribution des fractions dissoutes et particulaires dans la rivière dans des conditions hydrologiques contrastées Texte intégral
2015
Rabiet, Marie-Josèphe | Coquery, Marina | Carluer, Nadia | Gahou, J. | Gouy, Véronique | Milieux aquatiques, écologie et pollutions (UR MALY) ; Institut national de recherche en sciences et technologies pour l'environnement et l'agriculture (IRSTEA)
[Departement_IRSTEA]Eaux [TR1_IRSTEA]ARCEAU [TR2_IRSTEA]BELCA | International audience | The use of inorganic pesticides in viticulture leads to the accumulation of metal(loid)s in soils which can be transferred to the hydro-systems (groundwater and surface water) via several processes. This study reports on the occurrence and behavior of metal(loid)s (Li, Al, Cr, Ni, Cu, Zn, As, Sr, and Ba), with a particular focus on Cu, Zn, and As, in a small stream draining a vineyard catchment. Base flow and flood events were monitored in order to assess the spatiotemporal variability of metal(loid) concentrations and to evaluate the contribution of the particulate fraction to the transfer of metal(loid)s according to the hydrological conditions. Results show that very different patterns of metal(loid)s were observed in the Morcille River according to the hydrological conditions. In base flow conditions, Cu and As were mainly transported in dissolved phase, which contributed to more than 70 and 80 %, respectively, of the total load during this period. On the contrary, during base flow, Zn was mainly transported as associated to particles (90 %). During the two storm events monitored, the particulate fraction was dominant, as its represented around 74–80 %, 97 %, and 50–70 % of the total Cu, Zn, and As load in the river, respectively. Thus,despite a weaker affinity for particles during floods (decrease of particulate content during floods), metal(loid)s were mainly brought as particles, given that high amounts of suspended particulate matter (up to 2031 mg/L) were mobilized. Finally, comprehensive fluxes estimations confirmed that floods were responsible for more than 90 % of the total Cu, Zn and 75 % for As load transiting in the Morcille River in August within a very short period of time (less than 17 %).
Afficher plus [+] Moins [-]Transfer of metal(loid)s in a small vineyard catchment: contribution of dissolved and particulate fractions in river for contrasted hydrological conditions Texte intégral
2015
Rabiet, M. | Coquery, M. | Carluer, N. | Gahou, J. | Gouy, V.
The use of inorganic pesticides in viticulture leads to the accumulation of metal(loid)s in soils which can be transferred to the hydro-systems (groundwater and surface water) via several processes. This study reports on the occurrence and behavior of metal(loid)s (Li, Al, Cr, Ni, Cu, Zn, As, Sr, and Ba), with a particular focus on Cu, Zn, and As, in a small stream draining a vineyard catchment. Base flow and flood events were monitored in order to assess the spatiotemporal variability of metal(loid) concentrations and to evaluate the contribution of the particulate fraction to the transfer of metal(loid)s according to the hydrological conditions. Results show that very different patterns of metal(loid)s were observed in the Morcille River according to the hydrological conditions. In base flow conditions, Cu and As were mainly transported in dissolved phase, which contributed to more than 70 and 80 %, respectively, of the total load during this period. On the contrary, during base flow, Zn was mainly transported as associated to particles (90 %). During the two storm events monitored, the particulate fraction was dominant, as its represented around 74–80 %, 97 %, and 50–70 % of the total Cu, Zn, and As load in the river, respectively. Thus, despite a weaker affinity for particles during floods (decrease of particulate content during floods), metal(loid)s were mainly brought as particles, given that high amounts of suspended particulate matter (up to 2031 mg/L) were mobilized. Finally, comprehensive fluxes estimations confirmed that floods were responsible for more than 90 % of the total Cu, Zn and 75 % for As load transiting in the Morcille River in August within a very short period of time (less than 17 %).
Afficher plus [+] Moins [-]Effects of sulfide reduction on adsorption affinities of colloidal graphene oxide nanoparticles for phenanthrene and 1-naphthol Texte intégral
2015
Wang, Fanfan | Wang, Fang | Zhu, Dongqiang | Chen, Wei
The abiotic transformation of nanomaterials in the natural environment can significantly affect their fate, transport, and effects. We observed that the adsorption affinities of graphene oxide nanoparticles (GONPs) for both phenanthrene and 1-naphthol were profoundly enhanced in the presence of sulfide, an environmentally relevant reductant, with doses as low as 0.5 mM Na2S per 10 mg/L GONPs. For phenanthrene adsorption enhancement was predominantly caused by the increased surface hydrophobicity from Na2S treatment. For 1-naphthol, however, adsorption enhancement was caused mainly by the conversion of the epoxy/ether groups on the surface of graphene oxide (GO) to the phenolic hydroxyl and carbonyl groups, which allowed more significant H-bonding between 1-naphthol and GONPs. The findings of this study underline that abiotic transformation of GO not only affects the stability and mobility of GONPs, but also influences the adsorptive interactions between GONPs and environmental contaminants, and consequently, may increase the environmental risks of GONPs.
Afficher plus [+] Moins [-]Metabarcoding of benthic eukaryote communities predicts the ecological condition of estuaries Texte intégral
2015
Chariton, Anthony A. | Stephenson, Sarah | Morgan, Matthew J. | Steven, Andrew D.L. | Colloff, Matthew J. | Court, Leon N. | Hardy, Christopher M.
DNA-derived measurements of biological composition have the potential to produce data covering all of life, and provide a tantalizing proposition for researchers and managers. We used metabarcoding to compare benthic eukaryote composition from five estuaries of varying condition. In contrast to traditional studies, we found biotic richness was greatest in the most disturbed estuary, with this being due to the large volume of extraneous material (i.e. run-off from aquaculture, agriculture and other catchment activities) being deposited in the system. In addition, we found strong correlations between composition and a number of environmental variables, including nutrients, pH and turbidity. A wide range of taxa responded to these environmental gradients, providing new insights into their sensitivities to natural and anthropogenic stressors. Metabarcoding has the capacity to bolster current monitoring techniques, enabling the decisions regarding ecological condition to be based on a more holistic view of biodiversity.
Afficher plus [+] Moins [-]Occurrence and spatial distribution of organophosphate ester flame retardants and plasticizers in 40 rivers draining into the Bohai Sea, north China Texte intégral
2015
Wang, Runmei | Tang, Jianhui | Xie, Zhiyong | Mi, Wenying | Chen, Yingjun | Wolschke, Hendrik | Tian, Chongguo | Pan, Xiaohui | Luo, Yongming | Ebinghaus, Ralf
Organophosphate esters (OPEs) are alternatives to polybrominated diphenyl ethers, often used as flame-retardants and plasticizers. There are few reports of OPEs in river water. This study focused on the occurrence and spatial distribution of 11 OPE congeners and one synthetic intermediate triphenylphosphine oxide (TPPO) in 40 major rivers entering into the Bohai Sea. Total OPEs ranged from 9.6 to 1549 ng L−1, with an average of 300 ng L−1. Tris(1-chloro-2-propyl) phosphate (TCPP) (4.6–921 ng L−1, mean: 186 ng L−1) and tris(2-choroethyl) phosphate (TCEP) (1.3–268 ng L−1, mean: 80.2 ng L−1) were the most abundant OPEs and their distribution patterns are similar, indicating the same source (r = 0.61, P < 0.05) and the influence of large production and consumption of chlorinated OPEs in the region. Priority should be given to TCPP, PCEP and TPPO due to their high concentrations in the rivers and potential threat to aquatic organisms.
Afficher plus [+] Moins [-]Accumulation of trace metals in sediments in a Mediterranean Lagoon: Usefulness of metal sediment fractionation and elutriate toxicity assessment Texte intégral
2015
Zaaboub, Noureddine | Martins, Maria Virgínia Alves | Dhib, Amel | Béjaoui, Béchir | Galgani, François | El Bour, Monia | Aleya, Lotfi
The authors investigated sediment quality in Bizerte Lagoon (Tunisia) focusing on geochemical characteristics, metal sediment fractionation and elutriate toxicity assessment. Nickel, Cu, Zn, Pb, Cr and Cd partitioning in sediments was studied; accumulation and bioavailability were elucidated using enrichment factors, sequential extractions, redox potential, acid volatile sulfide and biotest procedures in toxicity evaluation. Results revealed an accumulation for Pb and Zn, reaching 99 and 460 mg kg−1 respectively. In addition, the acid volatile sulfide values were high in both eastern and western lagoon areas, thus affecting metal availability. Mean enrichment factor values for Pb and Zn were 4.8 and 4.9, respectively, with these elements as the main contributors to the lagoon's moderate enrichment level. Toxicity levels were influenced by accumulation of Zn in different surface sediment areas. Core sediments were investigated in areas with the highest metal concentrations; metal fractionation and biotest confirmed that Zn contributes to sediment toxicity.
Afficher plus [+] Moins [-]A new technique for online measurement of total and water-soluble copper (Cu) in coarse particulate matter (PM) Texte intégral
2015
Wang, Dongbin | Shafer, Martin M. | Schauer, James J. | Sioutas, Constantinos
This study presents a novel system for online, field measurement of copper (Cu) in ambient coarse (2.5–10 μm) particulate matter (PM). This new system utilizes two virtual impactors combined with a modified liquid impinger (BioSampler) to collect coarse PM directly as concentrated slurry samples. The total and water-soluble Cu concentrations are subsequently measured by a copper Ion Selective Electrode (ISE). Laboratory evaluation results indicated excellent collection efficiency (over 85%) for particles in the coarse PM size ranges. In the field evaluations, very good agreements for both total and water-soluble Cu concentrations were obtained between online ISE-based monitor measurements and those analyzed by means of inductively coupled plasma mass spectrometry (ICP-MS). Moreover, the field tests indicated that the Cu monitor could achieve near-continuous operation for at least 6 consecutive days (a time resolution of 2–4 h) without obvious shortcomings.
Afficher plus [+] Moins [-]Ecotoxicogenomic assessment of diclofenac toxicity in soil Texte intégral
2015
Chen, Guangquan | den Braver, Michiel W. | van Gestel, Cornelis A.M. | Straalen, N. M. van | Roelofs, Dick
Diclofenac is widely used as nonsteroidal anti-inflammatory drug leaving residues in the environment. To investigate effects on terrestrial ecosystems, we measured dissipation rate in soil and investigated ecotoxicological and transcriptome-wide responses in Folsomia candida. Exposure for 4 weeks to diclofenac reduced both survival and reproduction of F. candida in a dose-dependent manner. At concentrations ≥200 mg/kg soil diclofenac remained stable in the soil during a 21-day incubation period. Microarrays examined transcriptional changes at low and high diclofenac exposure concentrations. The results indicated that development and growth were severely hampered and immunity-related genes, mainly directed against bacteria and fungi, were significantly up-regulated. Furthermore, neural metabolic processes were significantly affected only at the high concentration. We conclude that diclofenac is toxic to non-target soil invertebrates, although its mode of action is different from the mammalian toxicity. The genetic markers proposed in this study may be promising early markers for diclofenac ecotoxicity.
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