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Health indicators and contaminant levels of a critically endangered species in the Gironde estuary, the European sturgeon Texte intégral
2020
Acolas, Marie-Laure | Davail, Blandine | Gonzalez, Patrice | Jean, Séverine | Clérandeau, Christelle | Morin, Bénédicte | Gourves, Pierre-Yves | Daffe, Guillemine | Labadie, Pierre | Perrault, Annie | Lauzent, Mathilde | Pierre, Maud | Le Barh, Romaric | Baudrimont, Magalie | Peluhet, Laurent | Le Menach, Karyn | Budzinski, Hélène | Rochard, Eric | Cachot, Jérôme | Ecosystèmes aquatiques et changements globaux (UR EABX) ; Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE) | Environnements et Paléoenvironnements OCéaniques (EPOC) ; École Pratique des Hautes Études (EPHE) ; Université Paris Sciences et Lettres (PSL)-Université Paris Sciences et Lettres (PSL)-Université de Bordeaux (UB)-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National de la Recherche Scientifique (CNRS) | Laboratoire d'Ecophysiologie et Ecotoxicologie des Systèmes Aquatiques (LEESA) ; Université Sciences et Technologies - Bordeaux 1 (UB)-Institut Français du Pétrole (IFP)-Centre National de la Recherche Scientifique (CNRS) | Laboratoire Ecologie Fonctionnelle et Environnement (LEFE) ; Institut Ecologie et Environnement - CNRS Ecologie et Environnement (INEE-CNRS) ; Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Université Toulouse III - Paul Sabatier (UT3) ; Université de Toulouse (UT)-Université de Toulouse (UT)-Centre National de la Recherche Scientifique (CNRS)-Institut National Polytechnique (Toulouse) (Toulouse INP) ; Université de Toulouse (UT) | Region Nouvelle-Aquitaine | IRSTEA | Adour-Garonne water agency | Region Nouvelle-Aquitaine | Gironde general council in 2014 | ANR-13-CESA-0018,SturTOP,Vulnérabilité et adaptabilité de la dernière population d'esturgeon européen (Acipenser sturio) aux facteurs de stress environnementaux : température, oxygène et polluants.(2013)
Health indicators and contaminant levels of a critically endangered species in the Gironde estuary, the European sturgeon Texte intégral
2020
Acolas, Marie-Laure | Davail, Blandine | Gonzalez, Patrice | Jean, Séverine | Clérandeau, Christelle | Morin, Bénédicte | Gourves, Pierre-Yves | Daffe, Guillemine | Labadie, Pierre | Perrault, Annie | Lauzent, Mathilde | Pierre, Maud | Le Barh, Romaric | Baudrimont, Magalie | Peluhet, Laurent | Le Menach, Karyn | Budzinski, Hélène | Rochard, Eric | Cachot, Jérôme | Ecosystèmes aquatiques et changements globaux (UR EABX) ; Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE) | Environnements et Paléoenvironnements OCéaniques (EPOC) ; École Pratique des Hautes Études (EPHE) ; Université Paris Sciences et Lettres (PSL)-Université Paris Sciences et Lettres (PSL)-Université de Bordeaux (UB)-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National de la Recherche Scientifique (CNRS) | Laboratoire d'Ecophysiologie et Ecotoxicologie des Systèmes Aquatiques (LEESA) ; Université Sciences et Technologies - Bordeaux 1 (UB)-Institut Français du Pétrole (IFP)-Centre National de la Recherche Scientifique (CNRS) | Laboratoire Ecologie Fonctionnelle et Environnement (LEFE) ; Institut Ecologie et Environnement - CNRS Ecologie et Environnement (INEE-CNRS) ; Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Université Toulouse III - Paul Sabatier (UT3) ; Université de Toulouse (UT)-Université de Toulouse (UT)-Centre National de la Recherche Scientifique (CNRS)-Institut National Polytechnique (Toulouse) (Toulouse INP) ; Université de Toulouse (UT) | Region Nouvelle-Aquitaine | IRSTEA | Adour-Garonne water agency | Region Nouvelle-Aquitaine | Gironde general council in 2014 | ANR-13-CESA-0018,SturTOP,Vulnérabilité et adaptabilité de la dernière population d'esturgeon européen (Acipenser sturio) aux facteurs de stress environnementaux : température, oxygène et polluants.(2013)
[Departement_IRSTEA]Eaux [TR1_IRSTEA]QUASARE [ADD1_IRSTEA]Dynamique et fonctionnement des écosystèmes | International audience | The European sturgeon, Acipenser sturio, is a highly endangered species that almost disappeared in the last decades. Thanks to yearly restocking of the population, this species is still found in the Gironde estuary (France), where juveniles grow during several years before leaving to the ocean. The aims of this study were to evaluate the pressure exerted on these fish by known organic and inorganic contaminants during their stay at the Gironde estuary, and to get information on the fish's health in this context. Monthly captures over the year 2014 provided 87 fish from the cohorts 2012 and 2013 mainly, and from cohorts 2008, 2009, and 2011, all fish born in hatchery. We report the very first analyses of contaminant levels and of biological markers measured in the blood of these fish.
Afficher plus [+] Moins [-]Health indicators and contaminant levels of a critically endangered species in the Gironde estuary, the European sturgeon Texte intégral
2020
Acolas, Marie-Laure | Davail, Blandine | Gonzalez, Patrice | Jean, Séverine | Clérandeau, Christelle | Morin, Bénédicte | Gourves, Pierre-Yves | Daffe, Guillemine | Labadie, Pierre | Perrault, Annie | Lauzent, Mathilde | Pierre, Maud | Le Barh, Romaric | Baudrimont, Magalie | Peluhet, Laurent | Le Menach, Karyn | Budzinski, Hélène | Rochard, Eric | Cachot, Jérôme
The European sturgeon, Acipenser sturio, is a highly endangered species that almost disappeared in the last decades. Thanks to yearly restocking of the population, this species is still found in the Gironde estuary (France), where juveniles grow during several years before leaving to the ocean. The aims of this study were to evaluate the pressure exerted on these fish by known organic and inorganic contaminants during their stay at the Gironde estuary, and to get information on the fish’s health in this context. Monthly captures over the year 2014 provided 87 fish from the cohorts 2012 and 2013 mainly, and from cohorts 2008, 2009, and 2011, all fish born in hatchery. We report the very first analyses of contaminant levels and of biological markers measured in the blood of these fish. Low inorganic contamination was found, composed of seven metals mainly Zn (< 5 μg mL⁻¹), Fe (< 1.5 μg mL⁻¹), Cu (< 0.8 μg mL⁻¹), Se (< 0.8 μg mL⁻¹), As (< 0.25 μg mL⁻¹), Co (< 0.14 μg mL⁻¹), and Mn (< 0.03 μg mL⁻¹). Concerning persistent organic contaminants, the sum of seven PCBs varied from 1 to 10 ng g⁻¹ plasma, that of eight OCPs from 0.1 to 1 ng g⁻¹, and that of eight PBDEs from 10 to 100 pg g⁻¹. Higher levels of contaminants were measured during spring as compared to summer. The sex steroid hormone plasma levels (estradiol, testosterone, and 11-ketotestosterone) were quite low, which was predictable for juveniles. The transcription of reproduction-involved genes (EstR, AR, LHR, sox9) in blood cells was demonstrated for the first time. Some of them were correlated with organic contaminant levels PCBs and OCPs. Other gene transcriptions (sodCu and bax) were correlated with PCBs and OCPs. However, the DNA damage level measured here as comet tail DNA and micronuclei ratio in red blood cells were in the very low range of the values commonly obtained in fish from pristine areas. The data presented here can serve as a reference base for future monitoring of this population of sturgeons.
Afficher plus [+] Moins [-]Keep and promote biodiversity at polluted sites under phytomanagement Texte intégral
2020
Garbisu, Carlos | Alkorta, Itziar | Kidd, Petra | Epelde, Lur | Mench, Michel | Instituto Vasco de Investigación y Desarrollo Agrario [Derio] (NEIKER) | Universidad del País Vasco [Espainia] / Euskal Herriko Unibertsitatea [España] = University of the Basque Country [Spain] = Université du pays basque [Espagne] (UPV / EHU) | Instituto de Investigaciones Agrobiológicas de Galicia (IIAG) ; Consejo Superior de Investigaciones Cientificas [España] = Spanish National Research Council [Spain] (CSIC) | Centro de Investigaciones Biológicas (CSIC) ; Consejo Superior de Investigaciones Cientificas [España] = Spanish National Research Council [Spain] (CSIC) | Biodiversité, Gènes & Communautés (BioGeCo) ; Université de Bordeaux (UB)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)
Keep and promote biodiversity at polluted sites under phytomanagement Texte intégral
2020
Garbisu, Carlos | Alkorta, Itziar | Kidd, Petra | Epelde, Lur | Mench, Michel | Instituto Vasco de Investigación y Desarrollo Agrario [Derio] (NEIKER) | Universidad del País Vasco [Espainia] / Euskal Herriko Unibertsitatea [España] = University of the Basque Country [Spain] = Université du pays basque [Espagne] (UPV / EHU) | Instituto de Investigaciones Agrobiológicas de Galicia (IIAG) ; Consejo Superior de Investigaciones Cientificas [España] = Spanish National Research Council [Spain] (CSIC) | Centro de Investigaciones Biológicas (CSIC) ; Consejo Superior de Investigaciones Cientificas [España] = Spanish National Research Council [Spain] (CSIC) | Biodiversité, Gènes & Communautés (BioGeCo) ; Université de Bordeaux (UB)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)
International audience | The phytomanagement concept combines a sustainable reduction of pollutant linkages at risk-assessed contaminated sites with the generation of both valuable biomass for the (bio)economy and ecosystem services. One of the potential benefits of phytomanagement is the possibility to increase biodiversity in polluted sites. However, the unique biodiversity present in some polluted sites can be severely impacted by the implementation of phytomanagement practices, even resulting in the local extinction of endemic ecotypes or species of great conservation value. Here, we highlight the importance of promoting measures to minimise the potential adverse impact of phytomanagement on biodiversity at polluted sites, as well as recommend practices to increase biodiversity at phytomanaged sites without compromising its effectiveness in terms of reduction of pollutant linkages and the generation of valuable biomass and ecosystem services.
Afficher plus [+] Moins [-]Keep and promote biodiversity at polluted sites under phytomanagement Texte intégral
2020
Garbisu, Carlos | Alkorta, Itziar | Kidd, Petra | Epelde, Lur | Mench, Michel
The phytomanagement concept combines a sustainable reduction of pollutant linkages at risk-assessed contaminated sites with the generation of both valuable biomass for the (bio)economy and ecosystem services. One of the potential benefits of phytomanagement is the possibility to increase biodiversity in polluted sites. However, the unique biodiversity present in some polluted sites can be severely impacted by the implementation of phytomanagement practices, even resulting in the local extinction of endemic ecotypes or species of great conservation value. Here, we highlight the importance of promoting measures to minimise the potential adverse impact of phytomanagement on biodiversity at polluted sites, as well as recommend practices to increase biodiversity at phytomanaged sites without compromising its effectiveness in terms of reduction of pollutant linkages and the generation of valuable biomass and ecosystem services.
Afficher plus [+] Moins [-]Linear toxicokinetic of chlordecone in ewe’s serum Texte intégral
2020
Saint-Hilaire, Maïlie | Rychen, Guido | Thomé, Jean-Pierre | Joaquim-Justo, Célia | Le Roux, Yves | Feidt, Cyril | Fournier, Agnès | Unité de Recherches Animal et Fonctionnalités des Produits Animaux (URAFPA) ; Université de Lorraine (UL)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE) | LEAE-CART ; Université de Liège = University of Liège = Universiteit van Luik = Universität Lüttich (ULiège) | ANR-16-CE21-0008,INSSICCA,Stratégies innovantes pour sécuriser les systèmes d'élevage dans les zones contaminées par la chlordécone. Une approche modèle développée dans les Antilles et applicable dans les zones contaminées à l'échelle mondiale(2016)
Linear toxicokinetic of chlordecone in ewe’s serum Texte intégral
2020
Saint-Hilaire, Maïlie | Rychen, Guido | Thomé, Jean-Pierre | Joaquim-Justo, Célia | Le Roux, Yves | Feidt, Cyril | Fournier, Agnès | Unité de Recherches Animal et Fonctionnalités des Produits Animaux (URAFPA) ; Université de Lorraine (UL)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE) | LEAE-CART ; Université de Liège = University of Liège = Universiteit van Luik = Universität Lüttich (ULiège) | ANR-16-CE21-0008,INSSICCA,Stratégies innovantes pour sécuriser les systèmes d'élevage dans les zones contaminées par la chlordécone. Une approche modèle développée dans les Antilles et applicable dans les zones contaminées à l'échelle mondiale(2016)
International audience | Chlordecone (CLD) is an organochlorine pesticide used in banana fields of the French West Indies between 1972 and 1993. This use resulted in a long-term pollution of soils and the possible contamination of farm animals. Indeed, after involuntary ingestion of soil, CLD is absorbed and consequently leads to contaminated animals. The aim of this study was the determination of CLD half-life and the establishment of the linearity of CLD disappearance kinetics in non-lactating adult's ewes. Chlordecone diluted in cremophor was intravenously administrated to ewes at different doses: 0.04, 0.2, or 1 mg kg(-1) body weight (n = 5 for each dose). Blood samples were collected from time t = 0 to time t = 84 days. Serum samples were extracted with a solid-phase extraction and analyzed by electron capture detection gas chromatography. A two-compartmental model was applied to the serum CLD kinetics. An additional statistical analysis was applied to the observed elimination parameters in serum according to the administrated dose, and no significant differences were detected. The linear elimination of CLD between 0.04 and 1 mg kg(-1) body weight allowed the possibility of ewe's extrapolation half-life in this dose range. The estimated mean CLD half-life in ewes was 24 days. Overall, the results of this study will be useful to establish decontamination strategies in small ruminants reared in contaminated CLD areas.
Afficher plus [+] Moins [-]Linear toxicokinetic of chlordecone in ewe’s serum Texte intégral
2020
Saint-Hilaire, Maïlie | Rychen, Guido | Thomé, Jean-Pierre | Joaquim-Justo, Célia | Le Roux, Yves | Feidt, Cyril | Fournier, Agnès
Chlordecone (CLD) is an organochlorine pesticide used in banana fields of the French West Indies between 1972 and 1993. This use resulted in a long-term pollution of soils and the possible contamination of farm animals. Indeed, after involuntary ingestion of soil, CLD is absorbed and consequently leads to contaminated animals. The aim of this study was the determination of CLD half-life and the establishment of the linearity of CLD disappearance kinetics in non-lactating adult’s ewes. Chlordecone diluted in cremophor was intravenously administrated to ewes at different doses: 0.04, 0.2, or 1 mg kg⁻¹ body weight (n = 5 for each dose). Blood samples were collected from time t = 0 to time t = 84 days. Serum samples were extracted with a solid-phase extraction and analyzed by electron capture detection gas chromatography. A two-compartmental model was applied to the serum CLD kinetics. An additional statistical analysis was applied to the observed elimination parameters in serum according to the administrated dose, and no significant differences were detected. The linear elimination of CLD between 0.04 and 1 mg kg⁻¹ body weight allowed the possibility of ewe’s extrapolation half-life in this dose range. The estimated mean CLD half-life in ewes was 24 days. Overall, the results of this study will be useful to establish decontamination strategies in small ruminants reared in contaminated CLD areas. Graphical abstract Experimental design of the CLD toxicokinetic study in ewes
Afficher plus [+] Moins [-]Towards simple tools to assess functional effects of contaminants on natural microbial and invertebrate sediment communities Texte intégral
2020
Pesce, Stéphane | Campiche, Sophie | Casado-Martinez, Carmen | Ahmed, Ayanleh, Mahamoud | Bonnineau, Chloé | Dabrin, Aymeric | Lyautey, Emilie | Ferrari, Benoit, J D | RiverLy - Fonctionnement des hydrosystèmes (RiverLy) ; Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE) | Swiss Centre for Applied Ecotoxicology (Ecotox Center) ; Ecole Polytechnique Fédérale de Lausanne (EPFL) | Centre Alpin de Recherche sur les Réseaux Trophiques et Ecosystèmes Limniques (CARRTEL) ; Université Savoie Mont Blanc (USMB [Université de Savoie] [Université de Chambéry])-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Observatoire des Sciences de l'Univers de Grenoble (Fédération OSUG)
Towards simple tools to assess functional effects of contaminants on natural microbial and invertebrate sediment communities Texte intégral
2020
Pesce, Stéphane | Campiche, Sophie | Casado-Martinez, Carmen | Ahmed, Ayanleh, Mahamoud | Bonnineau, Chloé | Dabrin, Aymeric | Lyautey, Emilie | Ferrari, Benoit, J D | RiverLy - Fonctionnement des hydrosystèmes (RiverLy) ; Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE) | Swiss Centre for Applied Ecotoxicology (Ecotox Center) ; Ecole Polytechnique Fédérale de Lausanne (EPFL) | Centre Alpin de Recherche sur les Réseaux Trophiques et Ecosystèmes Limniques (CARRTEL) ; Université Savoie Mont Blanc (USMB [Université de Savoie] [Université de Chambéry])-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Observatoire des Sciences de l'Univers de Grenoble (Fédération OSUG)
International audience | Surface sediments can accumulate contaminants that affect microorganisms and invertebrates and disturb benthic ecological functions. However, effects of contaminants on ecological functions supported by sediment communities are understudied. Here, we tested the relevance of two simple tools to assess the ecotoxicological effects of metal contamination on natural sediment communities using particulate organic matter breakdown and decomposition as a functional descriptor. To this aim, we performed a 21-day laboratory microcosm experiment to assess the individual and combined effects of Cu and As (nominal concentration of 40 mg kg−1 dw each) using the bait-lamina method (cellulose, bran flakes, and active coal in PVC strips) as well as artificial tablets (cellulose, bran flakes and active coal embedded in an agar matrix). Sediment toxicity was also evaluated using the standardized ostracod toxicity test. Both the bait-lamina and artificial tablet methods showed low effects of As on organic matter breakdown and decomposition but strong effects of Cu on this important ecological function. Both also showed that the presence of Cu and As in mixture in the sediment induced total inhibition of organic matter breakdown and decomposition. The ostracod toxicity test also showed high toxicity of Cu-spiked and Cu-plus-As-spiked sediments and low toxicity of As-spiked sediments. Besides confirming that artificial organic matter substrates are relevant and useful for assessing the functional effects of contaminants on sediment micro-and macro-organism communities, these results suggest that the proposed methods offer promising perspectives for developing tools for use in assessing functional ecotoxicology in the sediment compartment.
Afficher plus [+] Moins [-]Towards simple tools to assess functional effects of contaminants on natural microbial and invertebrate sediment communities Texte intégral
2020
Pesce, Stéphane | Campiche, Sophie | Casado-Martinez, Carmen | Ahmed, Ayanleh Mahamoud | Bonnineau, Chloé | Dabrin, Aymeric | Lyautey, Emilie | Ferrari, Benoit J.D.
Surface sediments can accumulate contaminants that affect microorganisms and invertebrates and disturb benthic ecological functions. However, effects of contaminants on ecological functions supported by sediment communities are understudied. Here, we tested the relevance of two simple tools to assess the ecotoxicological effects of metal contamination on natural sediment communities using particulate organic matter breakdown and decomposition as a functional descriptor. To this aim, we performed a 21-day laboratory microcosm experiment to assess the individual and combined effects of Cu and As (nominal concentration of 40 mg kg⁻¹ dw each) using the bait-lamina method (cellulose, bran flakes, and active coal in PVC strips) as well as artificial tablets (cellulose, bran flakes and active coal embedded in an agar matrix). Sediment toxicity was also evaluated using the standardized ostracod toxicity test. Both the bait-lamina and artificial tablet methods showed low effects of As on organic matter breakdown and decomposition but strong effects of Cu on this important ecological function. Both also showed that the presence of Cu and As in mixture in the sediment induced total inhibition of organic matter breakdown and decomposition. The ostracod toxicity test also showed high toxicity of Cu-spiked and Cu-plus-As-spiked sediments and low toxicity of As-spiked sediments. Besides confirming that artificial organic matter substrates are relevant and useful for assessing the functional effects of contaminants on sediment micro- and macro-organism communities, these results suggest that the proposed methods offer promising perspectives for developing tools for use in assessing functional ecotoxicology in the sediment compartment.
Afficher plus [+] Moins [-]Drainage water salinity and quality across nested scales in the Nile Delta of Egypt Texte intégral
2020
El-Agha, Doaa, E | Molle, François | Rap, Edwin | El Bialy, Maha | El-Hassan, Waleed, Abou | Institut de Recherche pour le Développement (IRD [Bolivie]) | Gestion de l'Eau, Acteurs, Usages (UMR G-EAU) ; Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-Institut de Recherche pour le Développement (IRD)-AgroParisTech-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Institut Agro - Montpellier SupAgro ; Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro) | Institute for Water Education (IHE Delft) | Australian Centre for International Agricultural Research (ACIAR) - LWR/2011/045
Drainage water salinity and quality across nested scales in the Nile Delta of Egypt Texte intégral
2020
El-Agha, Doaa, E | Molle, François | Rap, Edwin | El Bialy, Maha | El-Hassan, Waleed, Abou | Institut de Recherche pour le Développement (IRD [Bolivie]) | Gestion de l'Eau, Acteurs, Usages (UMR G-EAU) ; Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-Institut de Recherche pour le Développement (IRD)-AgroParisTech-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Institut Agro - Montpellier SupAgro ; Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro) | Institute for Water Education (IHE Delft) | Australian Centre for International Agricultural Research (ACIAR) - LWR/2011/045
International audience | Improving water management depends on understanding the functioning of irrigation and drainage systems across different environmental scales. For this purpose, this study in the Nile Delta of Egypt particularly examines the spatial and temporal variation of drainage water salinity from the system to the plot level. A better understanding of this variation across nested scales is crucial to refine the government's drainage reuse strategy and reduce the adverse effects on agricultural productivity, lagoon ecology, and human health. The study investigates the drainage system of the Meet Yazid study area (82,740 ha) located in the upper central part of the Nile Delta. The parameters measured were electrical conductivity (EC), dissolved oxygen (DO), pH, and temperature. Results showed that salinity and quality of drainage water in the Nile Delta vary highly with space and time. The secondary drains exhibited the highest variability of salinity compared with main drains and subsurface drainage collectors because they accumulate salts from deeper soil layers and seepage of saline groundwater at the time of low flow discharge. In secondary drains, the salinity increased up to four times that of drainage water coming from the collectors. Moreover, DO values were most of the time not meeting standards for reuse in irrigation, especially at main drains that collect not only agricultural drainage but also untreated household sewage water.
Afficher plus [+] Moins [-]Drainage water salinity and quality across nested scales in the Nile Delta of Egypt Texte intégral
2020
El-Agha, Doaa E. | Molle, François | Rap, Edwin | El Bialy, Maha | El-Hassan, Waleed Abou
Improving water management depends on understanding the functioning of irrigation and drainage systems across different environmental scales. For this purpose, this study in the Nile Delta of Egypt particularly examines the spatial and temporal variation of drainage water salinity from the system to the plot level. A better understanding of this variation across nested scales is crucial to refine the government’s drainage reuse strategy and reduce the adverse effects on agricultural productivity, lagoon ecology, and human health. The study investigates the drainage system of the Meet Yazid study area (82,740 ha) located in the upper central part of the Nile Delta. The parameters measured were electrical conductivity (EC), dissolved oxygen (DO), pH, and temperature. Results showed that salinity and quality of drainage water in the Nile Delta vary highly with space and time. The secondary drains exhibited the highest variability of salinity compared with main drains and subsurface drainage collectors because they accumulate salts from deeper soil layers and seepage of saline groundwater at the time of low flow discharge. In secondary drains, the salinity increased up to four times that of drainage water coming from the collectors. Moreover, DO values were most of the time not meeting standards for reuse in irrigation, especially at main drains that collect not only agricultural drainage but also untreated household sewage water.
Afficher plus [+] Moins [-]Reactivity of secondary phases in weathered limestone using isotopic tracers (D and 18O): the case study of the 'Tribunal Administratif' of Paris Texte intégral
2020
Gentaz, Lucile | Saheb, Mandana | Verney-Carron, Aurélie | Sessegolo, Loryelle | Chabas, Anne | Nuns, Nicolas | Remusat, Laurent | Gonzalez-Cano, Adriana | Fourdrin, Chloé | Mertz, Jean-Didier | Verney-Carron, Aurélie | Laboratoire Interuniversitaire des Systèmes Atmosphériques (LISA (UMR_7583)) ; Institut national des sciences de l'Univers (INSU - CNRS)-Université Paris-Est Créteil Val-de-Marne - Paris 12 (UPEC UP12)-Centre National de la Recherche Scientifique (CNRS)-Université Paris Cité (UPCité) | Institut Michel Eugène Chevreul - FR 2638 (IMEC) ; Université d'Artois (UA)-Centrale Lille-Institut de Chimie - CNRS Chimie (INC-CNRS)-Université de Lille-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE) | Institut de minéralogie, de physique des matériaux et de cosmochimie (IMPMC) ; Muséum national d'Histoire naturelle (MNHN)-Institut de recherche pour le développement [IRD] : UR206-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS) | Laboratoire Géomatériaux et Environnement (LGE) ; Université Gustave Eiffel | Laboratoire de recherche des monuments historiques (LRMH) ; Centre de Recherche sur la Conservation (CRC) ; Muséum national d'Histoire naturelle (MNHN)-Ministère de la Culture et de la Communication (MCC)-Centre National de la Recherche Scientifique (CNRS)-Muséum national d'Histoire naturelle (MNHN)-Ministère de la Culture et de la Communication (MCC)-Centre National de la Recherche Scientifique (CNRS)
International audience | For a long time, limestone has been massively used in stone building and monuments because of its easy extraction and common presence in the landscape. On ancient monuments, mostly built in urban areas, it is exposed to urban-borne pollutants responsible for specific alteration mechanisms and weathering kinetics. Especially, the dissolution of calcite and the precipitation of new phases will affect the limestone pore network, modify the stones capillary properties, and influence the further alteration. In order to better understand these processes, an altered limestone sample from 'Tribunal Administratif' (TA) in Paris was studied. The main secondary phase was found to be syngenite, which can be explained by the location of the sample close to the soil, a potential source of K (fertilizers). This phase is more soluble than gypsum that is commonly found on altered limestone. In order to assess the reactivity of the system (limestone and new phases), oxygen and hydrogen isotopes were used to trace the transfer of water ((D2O)-O-18) and identify the location of the reactive areas (susceptible to alteration). For that, TA samples were exposed in a climatic chamber to relative humidity (RH) cycles (25% RH for 2.5 days and 85% RH for 4.5 days) for 2 months with a (D2O)-O-18 vapor to simulate alteration occurring in conditions sheltered from the rain. Results have shown that the water vapor easily circulates deep in the sample and reacts preferentially with syngenite the most reactive phase (compared with calcite and quartz). This phase could evolve in gypsum when exposed to an environment different from the one resulting in its formation.
Afficher plus [+] Moins [-]Agrobacterium tumefaciens C58 presence affects Bacillus velezensis 32a ecological fitness in the tomato rhizosphere Texte intégral
2020
Abdallah, Dorra Ben | Krier, Francois | Jacques, Philippe | Tounsi, Slim | Frikha-Gargouri, Olfa | Biopesticides Laboratory ; Centre de Biotechnologie de Sfax (CBS) | Institut Charles Viollette (ICV) - ULR 7394 (ICV) ; Université d'Artois (UA)-Université du Littoral Côte d'Opale (ULCO)-Institut Supérieur d'Agriculture-Université de Lille-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE) | Université Savoie Mont Blanc (USMB [Université de Savoie] [Université de Chambéry]) | Microbial Processes and Interactions (MiPI) ; TERRA Teaching and Research Centre ; Gembloux Agro-Bio Tech [Faculté universitaire des sciences agronomiques de Gembloux] ([FUSAGx]) ; Université de Liège = University of Liège = Universiteit van Luik = Universität Lüttich (ULiège)-Université de Liège = University of Liège = Universiteit van Luik = Universität Lüttich (ULiège)-Gembloux Agro-Bio Tech [Faculté universitaire des sciences agronomiques de Gembloux] ([FUSAGx]) ; Université de Liège = University of Liège = Universiteit van Luik = Universität Lüttich (ULiège)-Université de Liège = University of Liège = Universiteit van Luik = Universität Lüttich (ULiège)
International audience | The persistence of pathogenic Agrobacterium strains as soil-associated saprophytes may cause an inconsistency in the efficacy of the biocontrol inoculants under field condition. The study of the interaction occurring in the rhizosphere between the beneficial and the pathogenic microbes is thus interesting for the development of effective biopesticides for the management of crown gall disease. However, very little is still known about the influence of these complex interactions on the biocontrol determinants of beneficial bacteria, especially Bacillus strains. This study aimed to evaluate the effect of the soil borne pathogen Agrobacterium tumefaciens C58 on root colonization and lipopeptide production by Bacillus velezensis strain 32a during interaction with tomato plants. Results show that the presence of A. tumefaciens C58 positively impacted the root colonization level of the Bacillus strain. However, negative impact on surfactin production was observed in Agrobacterium-treated seedling, compared with control. Further investigation suggests that these modulations are due to a modified tomato root exudate composition during the tripartite interaction. Thus, this work contributes to enhance the knowledge on the impact of interspecies interaction on the ecological fitness of Bacillus cells living in the rhizosphere.
Afficher plus [+] Moins [-]Field evaluation of one Cu-resistant somaclonal variant and two clones of tobacco for copper phytoextraction at a wood preservation site Texte intégral
2020
Kolbas, Aliaksandr | Herzig, Rolf | Marchand, Lilian | Maalouf, Jean-Paul | Kolbas, Natallia | Mench, Michel | Biodiversité, Gènes & Communautés (BioGeCo) ; Université de Bordeaux (UB)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE) | Université de Brest (UBO) | Phytotech Foundation ; Partenaires INRAE | ANR-10-LABX-0045,COTE,COntinental To coastal Ecosystems: evolution, adaptability and governance(2010) | ANR-20-FASU-0003,BioFoodOnMars,Biofortified and climate-resilient food and fodder production on marginal soils(2020)
International audience | A Cu-resistant somaclonal tobacco variant (NBCu 10-8-F1, C1), its BaG mother clone (C3), and the FoP tobacco clone (C2) were cultivated at a wood preservation site on Cu-contaminated soils (239-1290 mg Cu kg(-1) soil range) and an uncontaminated control site (CTRL, 21 mg Cu kg(-1)) to assess their shoot DW yields and potential use for bioavailable Cu stripping. The Cu concentration in the soil pore water varied between 0.15 and 0.84 mg L-1. Influences of Cu exposure and soil treatments, i.e., untreated soil (Unt), soils amended with compost and either dolomitic limestone (OMDL) or zerovalent iron grit (OMZ), on plant growth and shoot ionome were determined. All transplants survived and grew even at high total soil Cu. Shoots were harvested after 3 months (cut 1). Subsequently, bottom suckers developed and were harvested after 2 months (cut 2). Total shoot DW yield (cuts 1 + 2) varied between 0.8 and 9.9 t DW ha(-1) year(-1) depending on tobacco cultivars, soil treatments, and soil Cu exposure. It peaked for all cultivars in the OMDL plots at moderate Cu exposure (239-518 mg kg(-1) soil), notably for the C2 plants. Cut 2 contributed for 11-43% to total shoot DW yield. Increase in shoot DW yield diluted shoot Cu concentration. At low Cu exposure, total shoot Cu removal peaked for the variant. At moderate Cu exposure, shoot Cu concentrations were similar in all cultivars, but total shoot Cu removal was highest for the C2 plants. At high Cu exposure (753-1140 mg kg(-1)), shoot Cu concentrations peaked for the C2 plants in the Unt plots, the C1 and C2 plants in the OMZ plot, and the C3 ones in the OMDL plots. Shoot Cu removal (in g Cu ha(-1) year(-1)) ranged from 15.4 (C2 on the CTRL soil) to 261.3 (C2 on moderately contaminated OMDL soils). The C2 plants phytoextracted more Cu than the C1 and C3 ones in the Unt plots and in the OMDL plots at moderate Cu exposure. In the OMDL plots with high Cu exposure, shoot Cu removal was highest for the C1 plants. Soil amendments improved shoot Cu removal through increase in either shoot DW yield (OMDL-3-fold) or shoot Cu concentration (OMZ-1.3-fold). Increased shoot Cu concentration induced an ionome imbalance with increased shoot Al, Fe, B, and Mg concentrations and decreased P and K ones. Copper concentrations in plant parts varied in decreasing order: roots > leaves > inflorescence (cymes including seeds) > stem, whereas Cu removal ranked as roots > stem = leaves > inflorescence.
Afficher plus [+] Moins [-]Increased inheritance of structure and function of bacterial communities and pathogen propagation in plastisphere along a river with increasing antibiotics pollution gradient Texte intégral
2020
Xue, Nana | Wang, Liyi | Li, Wenfeng | Wang, Shanshan | Pan, Xiangliang | Zhang, Daoyong
Plastic debris provides a stable substrate and novel ecological niche for microorganisms in the aquatic environment, which was referred to as “Plastisphere”. Little is known about distribution patterns and responses of ecological function and structure of microbial communities in the plastisphere along rivers which usually have antibiotics pollution gradient. In this study, the differences in the community structure between the plastisphere and the planktonic bacteria, and their spatial variation of the community structure and function along a river with increased antibiotics pollution gradient was investigated at the watershed scale. The diversity of bacteria colonized on most plastic debris was higher than in surrounding water. Plastic debris could accumulate a higher abundance of some potential pathogens than surrounding water even at high antibiotics concentrations. The source tracking results showed that downstream plastisphere inherited much higher proportions of bacterial taxa from upstream than planktonic bacteria. About 92.3–99.7% of bacteria communities in downstream water were not from upstream but from the input of downstream human activities. On the contrary, high proportions of bacterial taxa in downstream plastisphere were closely connected to upstream. The plastisphere possesses higher ecological functional diversity than the planktonic bacteria. Seventy nine functional groups across plastisphere were predicted using functional annotation of prokaryotic taxa and only 65 functional groups were found in the planktonic bacteria. Plastisphere also acts as hotspot for biogeochemical cycling of nutrients such as N and S. Intensive human activities of urban and downstream agriculture and aquaculture had great effects on microbial community structure and functional groups of the Urumqi River. Pastisphere communities are much more resistant to human disturbance than planktonic bacteria. Compared to surrounding water, plastisphere increased inheritance from upstream microbial structure and function and also increased survival and propagation of pathogens in the downstream water with high concentrations of antibiotics.
Afficher plus [+] Moins [-]Evaluating the meteorological normalized PM2.5 trend (2014–2019) in the “2+26” region of China using an ensemble learning technique Texte intégral
2020
Qu, Linglu | Liu, Shijie | Ma, Linlin | Zhang, Zhongzhi | Du, Jinhong | Zhou, Yunhong | Meng, Fan
In recent years, implementation of aggressive and strict clean air policies has resulted in significant decline in observed PM₂.₅ concentration in the Beijing–Tianjin–Hebei (BTH) region and its surrounding areas (i.e., the “2 + 26” region). To eliminate the effects of interannual and seasonal meteorological variation, and to evaluate the effectiveness of emission abatement policies, we applied a boosted regression tree model to remove confounding meteorological factors. Results showed that the annual average PM2.5 concentration normalized by meteorology for the “2 + 26” region declined by 38% during 2014–2019 (i.e., from 96 to 60 μg/m³); however, the BTH region exhibited the most remarkable decrease in PM₂.₅ concentration (i.e., a 60% reduction). Certain seasonal trend in normalized PM₂.₅ level remained for four target subregions owing to the effects of anthropogenic emissions in autumn and winter. Although strong interannual variations of meteorological conditions were unfavorable for pollutant dispersion during the heating seasons of 2016–2018, the aggressive abatement policies were estimated to have contributed to reductions in normalized PM₂.₅ concentration of 19%, 10%, 19%, and 17% in the BTH, Henan, Shandong, and Shanxi subregions, respectively. Our study eliminated the meteorological contribution to concentration variation and confirmed the effectiveness of the implemented clean air policies.
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