Structural prediction and comparative docking studies of psychrophilic ß- Galactosidase with lactose, ONPG and PNPG against its counter parts of mesophilic and thermophilic enzymes

Ponnada Suresh Kumar; KK Pulicherla; Mrinmoy Ghosh; Anmol Kumar; KRS Sambasiva Rao

Structural prediction and comparative docking studies of psychrophilic ß- Galactosidase with lactose, ONPG and PNPG against its counter parts of mesophilic and thermophilic enzymes

2011

Ponnada Suresh Kumar | KK Pulicherla | Mrinmoy Ghosh | Anmol Kumar | KRS Sambasiva Rao

Enzymes from psychrophiles catalyze the reactions at low temperatures with higher specific activity. Among all the psychrophilic enzymes produced, cold active ß-galactosidase from marine psychrophiles revalorizes a new arena in numerous areas at industrial level. The hydrolysis of lactose in to glucose and galactose by cold active ß-galactosidase offers a new promising approach in removal of lactose from milk to overcome the problem of lactose intolerance. Herein we propose, a 3D structure of cold active ß-galactosidase enzyme sourced from Pseudoalteromonas haloplanktis by using Modeler 9v8 and best model was developed having 88% of favourable region in ramachandran plot. Modelling was followed by docking studies with the help of Auto dock 4.0 against the three substrates lactose, ONPG and PNPG. In addition, comparative docking studies were also performed for the 3D model of psychrophilic ß-galactosidase with mesophilic and thermophilic enzymes. Docking studies revealed that binding affinity of enzyme towards the three different substrates is more for psychrophilic enzyme when compared with mesophilic and thermophilic enzymes. It indicates that the enzyme has high specific activity at low temperature when compared with mesophilic and thermophilic enzymes.

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