BioNLP Shared Task 2011 – Bacteria Gene Interactions and Renaming
Jourde , Julien (INRA , Jouy-En-Josas (France). UR 1077 Mathématique, Informatique et Génome) | Manine , Jean-Pierre (PredictiveDB, Paris(France).) | Veber , Philippe (INRA , Jouy-En-Josas (France). UR 1077 Mathématique, Informatique et Génome) | Fort , Karën (Université Paris 13Centre National de la Recherche Scientifique, ParisVANDOEUVRE LES NANCY(France). UMR7030 and UPS76 Institut de l'information scientifique et technique (INIST)) | Bossy , Robert (INRA , Jouy-En-Josas (France). UR 1077 Mathématique, Informatique et Génome) | Alphonse , Erick (PredictiveDB, Paris(France).) | Bessières , Philippe (INRA , Jouy-En-Josas (France). UR 1077 Mathématique, Informatique et Génome)
We present two related tasks of the BioNLP Shared Tasks 2011: Bacteria Gene Renaming (Rename) and Bacteria Gene Interactions (GI). We detail the objectives, the corpus specification, the evaluation metrics, and we summarize the participants’ results. Both issued from PubMed scientific literature abstracts, the Rename task aims at extracting gene name synonyms, and the GI task aims at extracting genic interaction events, mainly about gene transcriptional regulations in bacteria.
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