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Molecular epidemiological characteristics and genetic evolutionary relationships of methicillin-resistant Staphylococcus aureus of different avian origins in Qingdao, China, using whole-genome sequencing
2023
Xiao Zhen | Qu Zhina | Liu Na | Wang Juan | Zhao Jianmei | Liu Junhui | Wang Lin | Huang Xiumei | Zhang Qingqing | Gao Yubin | Wang Junwei | Yu Zhiyong | Guan Jiajia | Liu Huanqi
To understand the prevalence of avian methicillin-resistant Staphylococcus aureus (MRSA) and the current status of drug resistance in Qingdao, a comprehensive molecular epidemiological investigation and analysis of evolutionary relationships of MRSA isolates from broiler and layer chickens and waterfowl was conducted.
Показать больше [+] Меньше [-]Identification of SNP markers for canine mammary gland tumours in females based on a genome-wide association study – preliminary results
2023
Mucha Anna | Nowak Błażej | Dzimira Stanisław | Liszka Bartłomiej | Zatoń-Dobrowolska Magdalena
The development of genetic research over recent decades has enabled the discovery of new genetic markers, such as single nucleotide polymorphisms (SNPs). This, as well as the full sequencing of the dog genome, has enabled genome-wide association studies (GWAS) to be used in the search for genetic causes of canine mammary tumours (CMTs).
Показать больше [+] Меньше [-]Single-nucleotide polymorphisms in prion protein gene of the Korean subspecies of Chinese water deer (Hydropotes inermis argyropus)
2009
Jeong, H.J., Konkuk University, Seoul, Republic of Korea | Lee, J.B., Konkuk University, Seoul, Republic of Korea | Park, S.Y., Konkuk University, Seoul, Republic of Korea | Song, C.S., Konkuk University, Seoul, Republic of Korea | Kim, B.S., Seoul Grand Park Zoo, Gwacheon, Republic of Korea | Rho, J.R., Seoul Grand Park Zoo, Gwacheon, Republic of Korea | Yoo, M.H., Seoul Grand Park Zoo, Gwacheon, Republic of Korea | Jeong, B.H., Ilsong Institute of Life Science, Hallym University, Anyang, Republic of Korea | Kim, Y.S., Ilsong Institute of Life Science, Hallym University, Anyang, Republic of Korea | Choi, I.S., Konkuk University, Seoul, Republic of Korea
Susceptibility to chronic wasting disease (CWD) in cervid species has been associated with polymorphisms in the prion protein gene (PRNP). The single nucleotide polymorphisms (SNPs) were found in the PRNP of the Korean subspecies of Chinese water deer via analyses of the DNA sequences obtained from 34 individual deer. Two SNPs were detected at codons 77 and 100. One SNP at codon 77 encoding Glycine was determined to be a silent mutation but the other SNP detected at codon 100 induced an amino acid change, from Asparagine to Serine. The prion protein (PrP) amino acid sequence of the water deer showed 98.8-99.2% homology with those of American elk, white-tailed deer and mule deer. The PrP of the water deer contained amino acid residues closely related with CWD-susceptibility. This study is the first to describe genetic variations in the PRNP of the Korean subspecies of Chinese water deer.
Показать больше [+] Меньше [-]Rapid differentiation of Hanwoo and Holstein meat using multiplex allele specific polymerase chain reaction protocols
2005
Koh, B.R.D. (Gwangju Metropolitan Health and Environment Research Institute, Gwangju, Republic of Korea), E-mail: barada@nvrqs.go.kr
Here I describe a multiplex allele specific PCR-based approach for the rapid detection between Hanwoo and Holstein meat associated with Melanocortin 1 receptor (MC1R) gene. Specific and universal oligonucleotide primers were used in combination to detect the presence of a single nucleotide polymorphism within the bovine MC1R DNA sequence. The presence of the bovine MC1R gene is indicated by the production of a single control PCR product, whilst positive samples generate an alternative smaller specific product over the same region. The mutations in MC1R104 codon revealed depending on the presence or absence of an indicative fragment amplified from the wild-type allele of this codon.
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