Ion sorption on soil and sediment has been reported to be potentially affected by bacteria which may interact both physically and chemically with solid surfaces. However, whether and how bacteria affect the sorption of inorganic phosphate (P) on soil colloids remains poorly known. Here, we comparably investigated the P sorption on four soil colloids (three highly weathered soils including two Oxisols and one Ultisol and one weakly weathered soil Alfisol) and their complexes with Bacillus subtilis and Pseudomonas fluorescens. Batch experiments showed a notable reduction in P sorption on the colloids of highly weathered soils by the two bacteria at varying P concentrations and pHs; whereas that on the colloids of Alfisol appeared to be unaffected by the bacteria. The inhibitory effect was confirmed by both greater decline in P sorption at higher bacteria dosages and the ability of the bacteria to desorb P pre-adsorbed on the colloids. Further evidence was given by isothermal titration calorimetric experiments which revealed an alteration in enthalpy change caused by the bacteria for P sorption on Oxisol but not for that on Alfisol. The B. subtilis was more efficient in suppressing P sorption than the P. fluorescens, indicating a dependence of the inhibition on bacterium type. After association with bacteria, zeta potentials of the soil colloids decreased considerably. The decrease positively correlated with the decline in P sorption, regardless of soil and bacterium types, demonstrating that the increment in negative charges of soil colloids by bacteria probably contributed to the inhibition. In addition, scanning electron microscopic observation and the Derjaguin–Landau–Verwey–Overbeek theory prediction suggested appreciable physical and chemical interactions between the bacteria and the highly weathered soil colloids, which might be another contributor to the inhibition. These findings expand our understandings on how bacteria mobilize legacy P in soils and sediments.

The primary objective of this study was to identify the capacity and mechanism of extracellular polymeric substance (EPS) adsorption on soil colloids of Alfisol and Ultisol at different pH and ionic strengths. Two kinds of EPS were extracted from Bacillus subtilis and Pseudomonas fluorescens by centrifugation, and their adsorption on Ultisol and Alfisol was investigated using a batch adsorption experiment and attenuated total reflectance–Fourier transform infrared spectroscopy (ATR-FTIR). The average diameter of EPS from B. subtilis and P. fluorescens was 1825 and 1288 nm, respectively, and both the EPS were negatively charged. The zeta potentials of the two EPS became more negative with increasing solution pH from 3 to 8 and less negative with increasing ionic strength from 0 to 80 mM. The maximum adsorption capacity of EPS-C and EPS-N on Alfisol was higher than that on Ultisol, whereas the maximum adsorption capacity of EPS-P on Alfisol was lower than that on Ultisol. The adsorption of EPS-C, EPS-N, and EPS-P of both the EPS on Ultisol and Alfisol decreased with increasing solution pH from 3 to 8. Adsorption of EPS-C, EPS-N, and EPS-P of both the EPS on Alfisol significantly increased with increasing ionic strength from 0 to 10 mM, whereas it remained constant, slightly increased, or reduced, when the ionic strength was increased from 10 to 80 mM. The adsorption of EPS-C, EPS-N, and EPS-P on Ultisol slightly increased with increasing ionic strength from 0 to 80 mM. Saturation coverage determined by ATR-FTIR showed that adsorption of whole EPS on Ultisol was higher than that on Alfisol at pH 6 after 60 min. Thus, electrostatic force between EPS and soil colloids played an important role in EPS adsorption. Besides, proteins and phosphate groups in EPS also contributed to EPS adsorption on soil colloids.

Extracellular polymeric substances (EPS) found in soils can reduce the mobility of heavy metals through the use of both electrostatic and non-electrostatic mechanisms. Their effects vary from one soil type to another. The influence of EPS from Escherichia coli on the adsorption behaviors of Cu(II) and Cd(II) by two bulk variable charge soils, Oxisol and Ultisol, was studied at constant and varied pH, and the results were compared to a constant charge Alfisol. The maximum adsorption capacities of the soils were significantly (P < 0.05) enhanced in the presence of EPS, with Cu(II) adsorption being greater. Interaction of EPS with soils made the soil surface charge more negative by neutralizing positive charges and shifting the zeta potentials in a negative direction: from −18.6 to −26.4 mV for Alfisol, +5.1 to −22.2 mV for Oxisol, and +0.3 to −28.0 mV for Ultisol at pH 5.0. The adsorption data fitted both the Freundlich and Langmuir isotherms well. Preadsorbed Cd(II) was more easily desorbed by KNO₃ than preadsorbed Cu(II) from both the control and EPS treated soils. The adsorption of both metals was governed by electrostatic and non-electrostatic mechanisms, although more Cu(II) was adsorbed through the non-electrostatic mechanism. The information obtained in this study will improve our understanding of the mechanisms involved in reducing heavy metals mobility in variable charge soils and hence, their bioavailability.

Limited information is available on the C stabilization mechanism of tropical soils under different management practices including long-term organic manuring, mineral fertilization alone, or in combination with lime. Hence, to understand the effect of continuous application (for 60 years) of organic manure, fertilizer, and lime alone or in combination on an acidic Alfisol, stabilization of soil organic carbon (SOC) was evaluated under maize (Zea mays L.) wheat (Triticum aestivum L.) cropping. There were eight treatments that included farmyard manure (FYM) and nitrogen (N) applied in terms of FYM, additional dose of phosphorus (P) and potassium (K) applied in terms of inorganic fertilizer (FYM + P’K’), FYM + P’K’ with liming (FYM + P’K’ + L) and NPK alone. These treatments were laid in a randomized block design with three replications. Results indicated that FYM + P’K’ plots had maximum amount of SOC inside large macroaggregates. The value was 33 and 92% greater than only minerally fertilized (NPK) and unfertilized control plots, respectively, whereas microaggregate-associated C was highest in plots with FYM + P’K’ and lime (FYM + P’K’ + L), which was 48 and 183% more than unfertilized control and NPK plots, respectively. Inside soil microaggregates, plots under FYM + P’K’ had highest labile C, while NPK + L plots had highest recalcitrant C. Plots with organic amendments contained higher glomalin in large macroaggregates. Plots treated with FYM + P’K’ had maximum intra-aggregate particulate organic matter within microaggregates inside macroaggregates (iPOM_mM), which was 28 and 74% higher than NPK and unfertilized control plots, respectively. Total C stock inside the protected microaggregates within macroaggregates was maximum for FYM + P’K’ plots. It had 38, 67, and 171% higher C stock than NPK, FYM, and unfertilized control plots, respectively. Interestingly, despite estimated C input in FYM-treated plots was much higher than NPK plots, FYM-treated plots had less C stabilization within microaggregates and within microaggregates inside macroaggregates. Microaggregates within macroaggregates accounted for ~54% of the recalcitrant C content. Thus, macroaggregates stabilization through occlusion of microaggregates was accountable for sequestration of SOC and only FYM application did not promote that mechanism compared to NPK. Carbon stabilization within macroaggregates under FYM plots was mainly governed by amorphous iron oxide.

Snails are an important link in the transfer of contaminants, especially metals in the food chain. Yet, few studies have examined the toxicity and accumulation of metals in snails in the tropics. This study assessed the toxicity and accumulation of two non-essential metals (cadmium and lead) to the tropical snail Archachatina papyracea. Specimens of the snail A. papyracea were exposed in a loamy soil collected from Ile-Ife, Nigeria and spiked with varying concentrations of Cd and Pb over 28 days. Survival and weight change of snails were monitored weekly, while tissue accumulation was assessed at the end of the 28-day period. Survival was a more sensitive endpoint than the weight change of snails. The Cd median lethal concentration (LC50) value was 93 ± 4.4 mg/kg, while the median effect concentration (EC50) for snail weight change was 131 ± 41 mg/kg. For Pb, LC50 value was 1121 ± 457 mg/kg, while the EC50 value for weight change was higher at 4541 ± 1180 mg/kg. Therefore, Cd was a factor of about 10 to 30 × more toxic than Pb, consistent with findings on the relative toxicity of Cd and Pb to other soil organisms, including earthworms, springtails, and mites. Although not included initially as an endpoint, egg production in the snails decreased with increasing Cd and Pb concentrations in the substrate. Metal analysis of the foot and visceral mass of surviving snails showed progressive accumulation of Cd and Pb as concentration increased, showing the tendency to use body residue of A. papyracea as an indicator of metal pollution. It further suggests the role of this snail species in above-ground metal transfer in the food chain and highlights the potential danger for human consumption.

The behavior and possible contamination risk due to the presence of potentially harmful metals (PHM) were studied based on 2250 soil samples that were collected in a 5-year period (2013–2017) from the plain of Thessaly (prefectures of Karditsa, Trikala, and Larissa). The vertical distribution of metals was also investigated from sample profiles at three depths 0–30, 30–60, and 60–90cm. The soils of the sampling belong to four taxonomy soil orders that are dominant in the studied area (Alfisols, Inceptisols, Endisols, and Vertisols). In a novel approach, robust quadratic regression analysis on multiple variables was used to define prediction models of the concentrations of two metals: Fe which is an essential metal and the toxic Cd. Linear and quadratic regression formulae were estimated based on the iteratively reweighted least squares robust regression approach in an effort to eliminate the impact of the outliers. These formulae define how several soil properties affect the distribution of the considered metals in each soil order. The evaluation of the estimated regression equations based on the R² metric indicates that they constitute a useful, reliable, and valuable tool for managing, describing, and predicting the pollution in the studied area.

Cadmium (Cd) contamination in the soil-rice chain is the major threat to human health in China. It is very necessary to lower Cd phytoavailability in contaminated soils and reduce Cd transfer from soil to rice for food safety. This study applied the Si-Ca-K-Mg amendment (SCKM) to immobilize Cd in acidic soils and then reduce its accumulation in rice grain (Oryza sativa L.). Two agricultural soils (Alfisol and Ultisol) collected from Eastern China were treated with three levels of Cd concentration (0, 0.4, and 2.0 mg/kg), respectively, for pot experiment. The phytoavailability and chemical forms of Cd in two soils were determined using ethylenediaminetetraacetic acid (EDTA) and the European Community Bureau of Reference (BCR) extraction procedures. At 2.0 mg Cd/kg-treated soils, application of SCKM amendment increased the yield of rice grain by 10–17% for Alfisol and 14–39% for Ultisol, and reduced the concentrations of EDTA-extractable Cd by 6–27% for Alfisol and 5–25% for Ultisol, compared with treatment without amendment. SCKM amendment significantly (p < 0.05) reduced the bioconcentration factor (BCF) of Cd in root, straw, and grain of rice. Compared with treatment without amendment, the application of amendments decreased the Cd concentrations of rice grains by 35–76% for Alfisol and 31–72% for Ultisol, respectively. The BCR sequential extraction revealed that amendment reduced acid soluble Cd fraction by 6.2–13.6% for Alfisol and 6.1–13.5% for Ultisol, respectively, indicating that amendment could effectively transform the highly phytoavailable Cd into a more stable form. SCKM amendment addition significantly (p < 0.05) increased soil pH and exchangeable K⁺, and decreased exchangeable Al³⁺ contents in both soils. Our results demonstrated that SCKM amendment was effective in reducing the phytoavailability and transfer of Cd in soil-rice system, and ameliorating soil acidity. The SCKM amendment had greater potential as a low-cost and friendly environmentally amendment for safe production of rice in Cd-contaminated soils.

Sorption-desorption behavior of six pesticides and some degradation products was assessed on seven agricultural volcanic and nonvolcanic soils belonging to Andisol, Ultisol, Mollisol, and Alfisol orders. The global interpretation of sorption data was performed by principal component analysis. Results showed exceptionally high sorption of glyphosate and aminomethylphosphonic acid (AMPA) (the breakdown product) on volcanic soils (K f > 1500 μg¹ ⁻ ¹ / ⁿ mL¹ / ⁿ g⁻¹) related mainly to contents of amorphous aluminum oxides (Andisols) and crystalline minerals (Ultisols). The lower sorption on nonvolcanic soils was associated to low organic matter contents and lack of significant minerals. Metsulfuron-methyl and 3,5,6-trichloro-2-pyridinol (metabolite of chlorpyrifos) were weakly to substantially sorbed on Andisols and Ultisols, but the first one was not sorbed at pH > 6.4, including nonvolcanic soils. The metabolite of diazinon, 2-isopropyl-4-methyl-6-hydroxypyrimidine, was weakly sorbed on all soils (K f = 0.4 to 3.6 μg¹ ⁻ ¹ / ⁿ mL¹ / ⁿ g⁻¹). Acidic compounds would be lixiviated in Mollisols and Alfisols, but they could leach also in Andisols and Ultisols if they reach greater depths. Atrazine and deethylatrazine sorption was related to organic carbon content; therefore, they were weakly retained on nonvolcanic soils (K f = 0.7 to 2.2 μg¹ ⁻ ¹ / ⁿ mL¹ / ⁿ g⁻¹). Chlorpyrifos was highly sorbed on all soils reaching K OC values of >8000. Finally, the significant retention of chlorothalonil and diazinon on Mollisols and Alfisols in spite of their low OC contents showed the contribution of clay minerals in the sorption process.

Soil contamination by copper (Cu) is a worldwide concern. Laboratory incubation and soil Cu characterization were conducted to examine the effects of external Cu loading and liming on Cu speciation in both bulk soil and particulates of an Alfisol and Spodosol under citrus production. Also, drainage water from the sites was evaluated for dissolved and particulate forms of Cu. Soil available Cu estimated by CaCl₂, NH₄OAc, or Mehlich-3 extraction significantly increased with external Cu loads and decreased with soil pH. Most increases in soil Cu occurred in the exchangeable and oxide-bound fractions. Organically bound Cu was the dominant fraction in both bulk soil and particulates, but more in particulates than bulk soil (P ≤ 0.001). Organically bound Cu was highly correlated with total recoverable Cu (P ≤ 0.01), increased significantly with external Cu loads (P ≤ 0.001), and decreased with soil pH (P ≤ 0.05). Lime addition converted part of Cu from available pools to more stable forms. Organically bound Cu complexes were found to dominate in soil solution or surface runoff. These results indicate that most Cu accumulated in the contaminated soils is highly mobile, and thus may impact citrus production and the environment.

Biochar as a soil amendment has been reported to affect the content and availability of soil nutrients. In this study, we aimed to test whether the biochar addition to soils would change the availability and chemical fractionation of phosphate in soils. Two soils (Ultisol and Alfisol) were amended with five kinds of biochars at application rate of 0, 1, and 2% (w/w). After 3-month incubation, availability and chemical forms of P were measured to investigate the potential effect and role of biochar in improving P availability in soils. The biochars used here had a lager variation of P content, depending on their feedstocks. Compared to the untreated soils, application of biochars derived from deciduous tree leaves (DLB), reed (RB), and rice straw (RSB) significantly increased the pH of two soils. The total P content of biochar-amended soils was increased with the addition of biochars. However, only RSB exhibited a significant increase (p < 0.05) of total P content. Application of biochars significantly increased the NH₄Cl-extractable P content of two soils, indicating that biochars were able to increase the availability of phosphate in soils, but the amount of available P was dependent on biochar types. Ultisol and Alfisol amended with RSB (2% w/w) showed an increase in the P availability (0.5 M NaHCO₃-extractable P) by 46 and 39%, respectively. For strongly acidic Ultisol, addition of biochar significantly increased Al-P and Ca-P content, as well as decreased Fe-P content. The P desorption test indicated the release of P from soils increased with the addition of biochar. Results suggested that biochar would change the P sorption affinity of the soil and help to increase the availability of fixed P. The increase of P availability with biochar application was due to the pH change and direct P contribution from biochar. Our results concluded that biochar affected the availability, chemical forms, and sorption capability of phosphate in soil. The extent of biochar effects on soil P varied greatly with the type of feedstock of biochar and soil type.