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Modelling bioaccumulation of heavy metals in soil-crop ecosystems and identifying its controlling factors using machine learning
2020
Hu, Bifeng | Xue, Jie | Zhou, Yin | Shao, Shuai | Fu, Zhiyi | Li, Yan | Chen, Songchao | Qi, Lin | Shi, Zhou
The prediction and identification of the factors controlling heavy metal transfer in soil-crop ecosystems are of critical importance. In this study, random forest (RF), gradient boosted machine (GBM), and generalised linear (GLM) models were compared after being used to model and identify prior factors that affect the transfer of heavy metals (HMs) in soil-crop systems in the Yangtze River Delta, China, based on 13 covariates with 1822 pairs of soil-crop samples. The mean bioaccumulation factors (BAFs) for all crops followed the order Cd > Zn > As > Cu > Ni > Hg > Cr > Pb. The RF model showed the best prediction ability for the BAFs of HMs in soil-crop ecosystems, followed by GBM and GLM. The R2 values of the RF models for the BAFs of Zn, Cu, Cr, Ni, Hg, Cd, As, and Pb were 0.84, 0.66, 0.59, 0.58, 0.58, 0.51, 0.30, and 0.17, respectively. The primary controlling factor in soil-to-crop transfer of all HMs under study was plant type, followed by soil heavy metal content and soil organic materials. The model used herein could be used to assist the prediction of heavy metal contents in crops based on heavy metal contents in soil and other covariates, and can significantly reduce the cost, labour, and time requirements involved with laboratory analysis. It can also be used to quantify the importance of variables and identify potential control factors in heavy metal bioaccumulation in soil-crop ecosystems.
Показать больше [+] Меньше [-]Cryptosporidium and Giardia in surface water and drinking water: Animal sources and towards the use of a machine-learning approach as a tool for predicting contamination
2020
Ligda, Panagiota | Claerebout, Edwin | Kostopoulou, Despoina | Zdragas, Antonios | Casaert, Stijn | Robertson, Lucy J. | Sotiraki, Smaragda
Cryptosporidium and Giardia are important parasites due to their zoonotic potential and impact on human health, often causing waterborne outbreaks of disease. Detection of (oo)cysts in water matrices is challenging and few countries have legislated water monitoring for their presence. The aim of this study was to investigate the presence and origin of these parasites in different water sources in Northern Greece and identify interactions between biotic/abiotic factors in order to develop risk-assessment models. During a 2-year period, using a longitudinal, repeated sampling approach, 12 locations in 4 rivers, irrigation canals, and a water production company, were monitored for Cryptosporidium and Giardia, using standard methods. Furthermore, 254 faecal samples from animals were collected from 15 cattle and 12 sheep farms located near the water sampling points and screened for both parasites, in order to estimate their potential contribution to water contamination. River water samples were frequently contaminated with Cryptosporidium (47.1%) and Giardia (66.2%), with higher contamination rates during winter and spring. During a 5-month period, (oo)cysts were detected in drinking-water (<1/litre). Animals on all farms were infected by both parasites, with 16.7% of calves and 17.2% of lambs excreting Cryptosporidium oocysts and 41.3% of calves and 43.1% of lambs excreting Giardia cysts. The most prevalent species identified in both water and animal samples were C. parvum and G. duodenalis assemblage AII. The presence of G. duodenalis assemblage AII in drinking water and C. parvum IIaA15G2R1 in surface water highlights the potential risk of waterborne infection. No correlation was found between (oo)cyst counts and faecal-indicator bacteria. Machine-learning models that can predict contamination intensity with Cryptosporidium (75% accuracy) and Giardia (69% accuracy), combining biological, physicochemical and meteorological factors, were developed. Although these prediction accuracies may be insufficient for public health purposes, they could be useful for augmenting and informing risk-based sampling plans.
Показать больше [+] Меньше [-]Spatial prediction of PM10 concentration using machine learning algorithms in Ankara, Turkey
2020
Bozdağ, Aslı | Dokuz, Yeşim | Gökçek, Öznur Begüm
With the increase in population and industrialization, air pollution has become one of the global problems nowadays. Therefore, air pollutant parameters should be measured at regular intervals, and the necessary measures should be taken by evaluating the results of measurements. In order to prevent air pollution, pollutant parameters must be evaluated within the framework of a model. Recently, in order to obtain objective and more sensitive results with regard to air pollution nowadays, studies, which use machine learning algorithms in artificial intelligence technologies, have been carried out. In this study, PM₁₀ concentrations, which are obtained from 7 stations in Ankara province in Turkey, were trained with machine learning algorithms (LASSO, SVR, RF, kNN, xGBoost, ANN). The PM₁₀ concentrations of the years 2009–2017 of 6 stations in Ankara were given as input, and the PM₁₀ concentrations of the seventh station for the year 2018 were predicted. The model development stage was repeated for each station, and the performance and error rates of the algorithms were determined by comparing the results produced by the algorithms with the actual results. The best results were provided with ANN (R² = 0.58, RMSE = 20.8, MAE = 14.4). The spatial distribution of the estimated concentration results was provided through Geographic Information System (GIS), and spatial strategies for improving air pollution over land use were established.
Показать больше [+] Меньше [-]Machine learning reveals that prolonged exposure to air pollution is associated with SARS-CoV-2 mortality and infectivity in Italy
2020
Cazzolla Gatti, Roberto | Velichevskaya, Alena | Tateo, Andrea | Amoroso, Nicola | Monaco, Alfonso
Air pollution can increase the risk of respiratory diseases, enhancing the susceptibility to viral and bacterial infections. Some studies suggest that small air particles facilitate the spread of viruses and also of the new coronavirus, besides the direct person-to-person contagion. However, the effects of the exposure to particulate matter and other contaminants on SARS-CoV-2 has been poorly explored. Here we examined the possible reasons why the new coronavirus differently impacted on Italian regional and provincial populations. With the help of artificial intelligence, we studied the importance of air pollution for mortality and positivity rates of the SARS-CoV-2 outbreak in Italy. We discovered that among several environmental, health, and socio-economic factors, air pollution and fine particulate matter (PM2.5), as its main component, resulted as the most important predictors of SARS-CoV-2 effects. We also found that the emissions from industries, farms, and road traffic - in order of importance - might be responsible for more than 70% of the deaths associated with SARS-CoV-2 nationwide. Given the major contribution played by air pollution (much more important than other health and socio-economic factors, as we discovered), we projected that, with an increase of 5–10% in air pollution, similar future pathogens may inflate the epidemic toll of Italy by 21–32% additional cases, whose 19–28% more positives and 4–14% more deaths. Our findings, demonstrating that fine-particulate (PM2.5) pollutant level is the most important factor to predict SARS-CoV-2 effects that would worsen even with a slight decrease of air quality, highlight that the imperative of productivity before health and environmental protection is, indeed, a short-term/small-minded resolution.
Показать больше [+] Меньше [-]Effects of microplastics on growth, phenanthrene stress, and lipid accumulation in a diatom, Phaeodactylum tricornutum
2020
Guo, Yahong | Ma, Wei | Li, Jiji | Liu, Wei | Qi, Pengzhi | Ye, Yingying | Guo, Baoying | Zhang, Jianshe | Qu, Chengkai
Most laboratory studies have focused on the effects of nanoplastics instead of plastics at the micrometer scale, which are the major microplastics (MPs) discarded in marine environments. Knowledge on the potential effects of micrometer scale plastics on marine microalgae remains limited. It remains unknown whether the micrometer scale plastics also affect microalgal growth, lipid accumulation and resistance to organic contaminants? In addition, the role of polymer-size on the potential hazardous effects of MPs on microalgae is unknown. In the present study, cell populations of a marine diatom, Phaeodactylum tricornutum, were treated with micrometer scale polyethylene (PEMP, 150 μm) and unplasticized polyvinyl chloride (uPVCMP, 250 μm) powders in the laboratory. Growth was assessed using a hemacytometer and neutral lipid concentrations were evaluated using the Nile Red staining method under short-term (four days) and long-term (nine days) exposure. The effects of combined PEMP and phenanthrene (Phe), and uPVCMP and Phe exposures over four days on growth were investigated. Importance scores and SHapley Additive exPlanations (SHAP) values were calculated to assess the contributions of seven factors in exposure systems to the hazardous effects of MPs on microalgae using a machine-learning prediction based on 165 data sets. Both MP types did not influence algal growth and lipid accumulation but minimized algal inhibition by the action of Phe at four days. In addition, lipid accumulation was induced at nine days. Both importance scores and SHAP values indicated that MP polymer-size was the key factor influencing MP toxicity in microalgae. In conclusion, MPs had adverse effects only in chronic tests and the potential adsorption of MPs could have led to the lower levels of toxicity in a combined MP–Phe exposure system. Compared to nanoplastics, MPs in the hundred-micrometer range do not significantly affect growth and their adsorption would not be influenced by size. Therefore, MP size is the most critical factor that should be considered in future laboratory tests and eco-toxicological risk assessments for microalgae.
Показать больше [+] Меньше [-]Combination of compositional data analysis and machine learning approaches to identify sources and geochemical associations of potentially toxic elements in soil and assess the associated human health risk in a mining city
2020
Tepanosyan, Gevorg | Sahakyan, Lilitʻ | Maghakyan, Nairuhi | Saghatelyan, Armen
Mining activities change the chemical composition of the environment and have negative reflection on people’s health and there is no single measure to deal with adverse consequences of mining activities, as each case is specific and needs to be understood and mitigated in a unique way. In this study, the combination of compositional data analysis (CoDA), k-means algorithm, hierarchical cluster analysis applied to reveal the geochemical associations of potentially toxic elements (PTE) in soil of Alaverdi city (Armenia) (Ti, Fe, Ba, Mn, Co, V, Pb, Zn, Cu, Cr, Mo, As). Additionally, to assess PTE-induced health risk, two commonly used approaches were used. The obtained results show that the combination of CoDA and machine learning algorithms allow to identify and describe three geochemical associations of the studied elements: the natural, manmade and hybrid. Moreover, the revealed geochemical associations were linked to the natural pattern of distribution of the element concentrations including the influence of the natural mineralization of the parent rocks, as well as the emission from the copper smelter and urban management related activities. The health risk assessment using the US EPA method demonstrated that the observed contents of studied elements are posing a non-carcinogenic risk to children in the entire territory of the city. In the case of adults, the non-carcinogenic risk was identified in areas situated close to the copper smelter. The Summary pollution index (Zc) values were in line with the results of the US EPA method and indicated that the main residential part of the city was under the hazardous pollution level suggesting the possibility of increase in the overall incidence of diseases among frequently ill individuals, children with chronic diseases and functional disorders of vascular system. The obtained results indicated the need for further in-depth studies with special focus on the synergic effect of PTE.
Показать больше [+] Меньше [-]Evaluation of machine learning techniques with multiple remote sensing datasets in estimating monthly concentrations of ground-level PM2.5
2018
Fine particulate matter (PM₂.₅) has been recognized as a key air pollutant that can influence population health risk, especially during extreme cases such as wildfires. Previous studies have applied geospatial techniques such as land use regression to map the ground-level PM₂.₅, while some recent studies have found that Aerosol Optical Depth (AOD) derived from satellite images and machine learning techniques may be two elements that can improve spatiotemporal prediction. However, there has been a lack of studies evaluating use of different machine learning techniques with AOD datasets for mapping PM₂.₅, especially in areas with high spatiotemporal variability of PM₂.₅.In this study, we compared the performance of eight predictive algorithms with the use of multiple remote sensing datasets, including satellite-derived AOD data, for the prediction of ground-level PM2.5 concentration. Based on the results, Cubist, random forest and eXtreme Gradient Boosting were the algorithms with better performance, while Cubist was the best (CV-RMSE = 2.64 μg/m3, CV-R² = 0.48). Variable importance analysis indicated that the predictors with the highest contributions in modelling were monthly AOD and elevation.In conclusion, appropriate selection of machine learning algorithms can improve ground-level PM2.5 estimation, especially for areas with nonlinear relationships between PM2.5 and predictors caused by complex terrain. Satellite-derived data such as AOD and land surface temperature (LST) can also be substitutes for traditional datasets retrieved from weather stations, especially for areas with sparse and uneven distribution of stations.
Показать больше [+] Меньше [-]Formulating Convolutional Neural Network for mapping total aquifer vulnerability to pollution
2022
Nadiri, Ata Allah | Moazamnia, Marjan | Sadeghfam, Sina | Gnanachandrasamy, Gopalakrishnan | Venkatramanan, Senapathi
Aquifer vulnerability mapping to pollution is topical research activity, and common frameworks such as the basic DRASTIC framework (BDF) suffer from the inherent subjectivity. This paper formulates an artificial intelligence modeling strategy based on Convolutional Neural Network (CNN) to decrease subjectivity. This formulation considers three definitions of intrinsic, specific, and total vulnerabilities. Accordingly, three CNN models are trained and tested to calculate IVI, SVI, and TVI, respectively referring to the intrinsic, specific, and total vulnerability indices. The formulation is applied in an unconfined aquifer northwest of Iran and delineates hotspots within the aquifer. The area under curve (AUC) values derived by the receiver operating curves evaluate the vulnerability indices versus nitrate concentrations. The AUC values for BDF, IVI, SVI, and TVI are 0.81, 0.91, 0.95, and 0.95, respectively. Therefore, CNNs significantly improve the results compared to BDF, but IVI, SVI, and TVI have approximately identical performances. However, the visual comparison between their results provides evidence that significant differences exist between the spatial patterns despite identical AUC values.
Показать больше [+] Меньше [-]Comparison of land use regression and random forests models on estimating noise levels in five Canadian cities
2020
Liu, Ying | Goudreau, Sophie | Oiamo, Tor | Rainham, Daniel | Hatzopoulou, Marianne | Chen, Hong | Davies, Hugh | Tremblay, Mathieu | Johnson, James | Bockstael, Annelies | Leroux, Tony | Smargiassi, Audrey
Chronic exposure to environment noise is associated with sleep disturbance and cardiovascular diseases. Assessment of population exposed to environmental noise is limited by a lack of routine noise sampling and is critical for controlling exposure and mitigating adverse health effects. Land use regression (LUR) model is newly applied in estimating environmental exposures to noise. Machine-learning approaches offer opportunities to improve the noise estimations from LUR model. In this study, we employed random forests (RF) model to estimate environmental noise levels in five Canadian cities and compared noise estimations between RF and LUR models. A total of 729 measurements and 33 built environment-related variables were used to estimate spatial variation in environmental noise at the global (multi-city) and local (individual city) scales. Leave one out cross-validation suggested that noise estimates derived from the RF global model explained a greater proportion of variation (R2: RF = 0.58, LUR = 0.47) with lower root mean squared errors (RF = 4.44 dB(A), LUR = 4.99 dB(A)). The cross-validation also indicated the RF models had better general performance than the LUR models at the city scale. By applying the global models to estimate noise levels at the postal code level, we found noise levels were higher in Montreal and Longueuil than in other major Canadian cities.
Показать больше [+] Меньше [-]A methodological framework for identifying potential sources of soil heavy metal pollution based on machine learning: A case study in the Yangtze Delta, China
2019
Jia, Xiaolin | Hu, Bifeng | Marchant, Ben P. | Zhou, Lianqing | Shi, Zhou | Zhu, Youwei
It is a great challenge to identify the many and varied sources of soil heavy metal pollution. Often little information is available regarding the anthropogenic factors and enterprises that could potentially pollute soils. In this study we use freely available geographical data from a search engine in conjunction with machine learning methodologies to identify and classify potentially polluting enterprises in the Yangtze Delta, China. The data were classified into 31 separate and four integrated industry types by five different machine learning approaches. Multinomial naive Bayesian (NB) methods achieved an accuracy of 87% and Kappa coefficient of 0.82 and were used to classify the geographic data from more than 260,000 enterprises. The relationship between the different industry classes and measurements of soil cadmium (Cd) and mercury (Hg) concentrations was explored using bivariate local Moran's I analysis. The analysis revealed areas where different industry classes had led to soil pollution. In the case of Cd, elevated concentrations also occurred in some areas because of excessive fertilization and coal mining. This study provides a new approach to investigate the interaction between anthropogenic pollution and natural sources of soil heavy metals to inform pollution control and planning decisions regarding the location of industrial sites.
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