Genome fragment enrichment (GFE) method was applied to identify host-specific bacterial genetic markers that differ among different fecal metagenomes. To enrich for swine-specific DNA fragments, swine fecal DNA composite (n = 34) was challenged against a DNA composite consisting of cow, human, goat, sheep, chicken, duck and goose fecal DNA extracts (n = 83). Bioinformatic analyses of 384 non-redundant swine enriched metagenomic sequences indicated a preponderance of Bacteroidales-like regions predicted to encode metabolism-associated, cellular processes and information storage and processing. After challenged against fecal DNA extracted from different animal sources, four sequences from the clone libraries targeting two Bacteroidales- (genes 1–38 and 3–53), a Clostridia- (gene 2–109) as well as a Bacilli-like sequence (gene 2–95), respectively, showed high specificity to swine feces based on PCR analysis. Host-specificity and host-sensitivity analysis confirmed that oligonucleotide primers and probes capable of annealing to select Bacteroidales-like sequences (1–38 and 3–53) exhibited high specificity (>90%) in quantitative PCR assays with 71 fecal DNAs from non-target animal sources. The two assays also demonstrated broad distributions of corresponding genetic markers (>94% positive) among 72 swine feces. After evaluation with environmental water samples from different areas, swine-targeted assays based on two Bacteroidales-like GFE sequences appear to be suitable quantitative tracing tools for swine fecal pollution.

This study aimed to investigate the accumulation of polybrominated diphenyl ethers (PBDEs) in the brain compared with that in other tissues among different vertebrates. We collected mice, chickens, ducks, frogs, and fish from an e-waste recycling region in Taizhou, China, and measured PBDE concentrations in brain, liver and muscle tissues. The levels of PBDE in the tissues of mice, chickens, ducks, frogs and fish ranged 0.45–206, 0.06–18.8, 1.83–112, 2.75–108, and 0.02–32.0 ng/g wet weight, respectively. Preferential distribution in the liver and muscle relative to the brain was observed for PBDEs in mice, chickens, ducks and frogs. However, a high retention in the brain compared to the liver and muscle was observed in fish. Comparison of the brain/liver concentration (B/L) ratios revealed differences in PBDEs accumulation in the brain among these vertebrates. PBDEs accumulation in the brain was greatest in fish, followed by frogs, while the lowest accumulation occurred in the brains of mammals and birds. The findings apparently coincided with the evolution of the blood-brain barrier (BBB) across vertebrates, i.e. the BBB of fish might be less efficient than those of mammals, birds and amphibian. Low brominated congeners (such as BDE-28, BDE-47 and BDE-99) were predominant in the brains of investigated vertebrates, whereas BDE-209 was most abundant in liver and muscle tissues of mice, chickens and ducks. Significant differences in B/L ratios among PBDE congeners were found in both mice and chickens (p < 0.05). Particularly in mice, the B/L ratios of PBDE congeners presented a declining trend with increased bromine number. Our findings suggested that low brominated congeners might have a higher capacity to penetrate the BBB and accumulate in the brain, whereas high brominated congeners such as BDE-209 might have less potency to pass through the barrier. Further experimental studies are needed to confirm our findings.

Accumulation of selenium (Se) by lesser and greater scaup (Aythya affinis, A. marila) at staging and wintering areas could have contributed to the decline in their continental population. We exposed lesser scaup to background (0.8 μg/g), moderate (8.1 μg/g) and high (20.7 μg/g) levels of dietary Se in captivity and measured survival rates and indices of health in relation to hepatic Se concentrations. There was 100% survival in scaup exposed to Se for 10-weeks (average staging duration at Great Lakes), but ducks in the high treatment group had less lipids. There was 93% survival after 23-weeks (average wintering duration at Great Lakes), but no differences among treatment groups in body composition. There were no effects of Se on oxidative stress and cell-mediated immunity; rather we recorded immuno-stimulatory effects on antibody production. Results from our captive study suggest Se alone did not cause the continental decline in scaup populations.

In this paper we present the studies conducted on blood samples taken from Mallards (Anas platyrhynchos). Birds were captured for ringing purposes (n = 43) in two small and two big towns (including highly urbanized areas). For comparison samples of blood from birds shot on fish ponds were used (n = 26). Based on the body mass all sampled individuals can be assessed as being in good condition. Levels of cadmium (Cd), chromium (Cr), copper (Cu), iron (Fe), nickel (Ni), lead (Pb) and zinc (Zn) in blood samples were measured with AAS. Concentrations of metals did not differ statistically between sexes and made up a following order: Fe > Zn > Cu > Cr ≈ Ni > Pb > Cd. Mallards from towns revealed lower concentrations of Zn and Cu but higher concentration of Fe. There was no difference in exposition to Pb between birds from towns and fish ponds.

The Hudson River, NY, USA is contaminated for over 300 km with polychlorinated biphenyls (PCBs) released from two General Electric (GE) capacitor plants. We collected adult and juvenile mallards (Anas platyrhynchos) from four different areas of the river; an area upstream of the GE plants (n = 38), two areas directly downstream of the GE plants (n = 41, n = 38), and an area more than 100 km downstream in the freshwater tidal river (n = 20). Collections occurred during July and August (2008) when ducks were flightless to ensure ducks were “resident” and exposures were local. Fat and muscle tissue were analyzed for PCBs. PCBs were detected in all samples, and mallards below the GE plant sites on the Hudson River had orders of magnitude higher concentrations of PCBs than those above the plants. Juvenile mallards from areas directly downstream of the GE plant sites tended to have higher PCB concentrations in fat than adults. The patterns of PCB congeners and homolog groups varied across the study areas, with areas directly downstream of the GE plants dominated by tetra-chloro biphenyls whereas samples from upstream and the freshwater tidal river tended towards higher chlorinated congeners. Congener patterns between male and female and juvenile and adult mallards were generally similar within study areas, with the exception of one area downstream of the GE plants where adult birds exhibited different patterns than juveniles. Evidence of PCBs from the GE plant sites was detected in the tidal Hudson River, more than 100 km downstream of the plant sites. More than 90% of the ducks collected in areas downstream of the GE plants but above the tidally influenced river exceed the USFDA tolerance level for PCBs in poultry, which should be a concern for consumers of waterfowl taken in proximity to the upper Hudson River.

Although physiological traits and phenology are thought to be evolved traits, they often show marked variation within populations, which may be related to extrinsic factors. For example, trace elements such as mercury (Hg) and lead (Pb) alter biochemical processes within wildlife that may affect migration and breeding. While there is a growing understanding of how contaminants may influence wildlife physiology, studies addressing these interactions in free-living species are still limited. We examined how four non-essential trace elements (cadmium, Hg, Pb and selenium) interacted with physiological and breeding measures known to influence breeding in a free-living population of common eider ducks (Somateria mollissima). We collected blood from female eiders as they arrived at a breeding colony in northern Canada. Blood was subsequently assessed for baseline corticosterone (CORT), immunoglobulin Y (IgY), and the four trace elements. We used model selection to identify which elements varied most with CORT, IgY, arrival condition, and arrival timing. We then used path analysis to assess how the top two elements from the model selection process (Hg and Pb) varied with metrics known to influence reproduction. We found that arrival date, blood Hg, CORT, and IgY showed significant inter-annual variation. While blood Pb concentrations were low, blood Pb levels significantly increased with later arrival date of the birds, and varied negatively with eider body condition, suggesting that even at low blood concentrations, Pb may be related to lower investment in reproduction in eiders. In contrast, blood Hg concentrations were positively correlated with eider body condition, indicating that fatter birds also had higher Hg burdens. Overall, our results suggest that although blood Hg and Pb concentrations were below no-effect levels, these low level concentrations of known toxic metals show significant relationships with breeding onset and condition in female eider ducks, factors that could influence reproductive success in this species.

This study was conducted to analyze the genetic variability of Escherichia coli from domesticated animal wastes for microbial source tracking (MST) application in fecal contaminated shellfish growing waters of Xiangshan Bay, East China Sea. (GTG)₅ primer was used to generate 1363 fingerprints from E. coli isolated from feces of known 9 domesticated animal sources around this shellfish culture area. Jackknife analysis of the complete (GTG)₅-PCR DNA fingerprint library indicated that isolates were assigned to the correct source groups with an 84.28% average rate of correct classification. Based on one-year source tracking data, the dominant sources of E. coli were swine, chickens, ducks and cows in this water area. Moreover, annual and spatial changes of E. coli concentrations and host sources may affect the level and distribution of zoonotic pathogen species in waters. Our findings will further contribute to preventing fecal pollution in aquatic environments and quality control of shellfish.

Elevated levels of selenium (Se) have been detected in wintering and spring-staging lesser scaup. Here, we compared spring scaup Se and mercury (Hg) levels to those of ring-necked ducks and white-winged scoters, species exhibiting increasing and decreasing boreal populations, respectively. Mercury concentrations were low in all three species. Geometric mean (95%CI) liver Se concentrations were 6.2 (5.5-7.0), 4.6 (4.0-5.4), and 32.6 (28.4-37.3) mg/kg dry weight (dw) in scaup, ringnecks and scoters, respectively. Only scoter livers (66%) were above 33 mg/kg dw Se. Scaup and ringneck Se levels were unrelated to breeding status or lipid and protein levels; breeding scoters and females with greater lipid mass had higher Se than non-breeders. Egg and follicle concentrations in scaup and scoters were normal (mean [95%CI] = 2.3 [1.9-2.6] and 2.4 [2.1-2.7] mg/kg dw, respectively). Overall, we found no support for a relationship between selenium and boreal scaup and scoter declines, and discuss current Se threshold concentrations. Selenium is not affecting boreal scaup, ring-necked duck, or scoter body condition or reproduction.

Among wild birds, lead (Pb) exposure caused by ingestion of ammunition is a worldwide problem. We aimed to reveal the behavior and toxic effect of Pb caused by ingesting Pb shots in waterfowl. Four male, eight-week old Muscovy ducks (Cairina moschata) were given three Pb shots (approximately 240 mg in total) orally and then fed for 29 days after exposure, simulating a low-dose Pb exposure in wild waterfowl. During the breeding period, blood samples were collected 10 times, and fecal samples every day. Additionally, 22 fresh tissue and 6 bone samples were obtained from each duck through the dissection. Although there were no gross abnormalities, the maximum blood Pb concentration of each duck ranged from 0.6 to 3.7 mg/L, reaching a threshold concentration indicative of clinical symptoms (>0.5 mg/L). δ-aminolevulinic acid dehydratase declined one day after exposure and remained low throughout the feeding period. Hematocrit also tended to decrease, indicating signs of anemia. The highest Pb accumulation was observed in the bones, followed by the kidneys, intestinal tracts, and liver. High Pb accumulation in the bones, which are known to have a long Pb half-life, suggested that Pb would remain in the body and possibly affect bird health beyond 28 days after exposure. Gene expression analysis showed a significant increase in the expression of the toll-like receptor-3 gene, which is involved in virus discrimination in the liver, suggesting a disruption of the immune system. Microbiota analyses showed a correlation between the blood Pb concentration and the abundances of Lachnospiraceae and Ruminococcaceae, suggesting that Pb affects lipid metabolism. These results provide fundamental data on Pb exposure in wild birds and a new perspective on the damage such exposure causes.