The Keban Reservoir, which is the second man-made waterbody in Turkey, has the biggest rainbow trout production in the country. In this study, the impacts of rainbow trout farms on water and sediment chemistry were investigated. Water and sediment samples were taken at distances of 0, 10, 25, 50 and 100 m from the edge of the cages at the three fish farms, and at the respective reference stations. Samples were also taken at 0 m stations and reference stations in the late August when there were no fish in the cages. Physico-chemical variables and trace metals were analysed in all samples. Due to likely high dilution rates and recycling processes in the water column of the reservoir, little changes in the water quality parameters associated with wastes of the fish farms were noticed. When compared with those in the sediment samples at the stations near the edge of cages, the lower concentrations of total phosphorus (TP), total nitrogen (TN), organic matter (OM), total carbon (TC), sulfide (S2−), arsenic (As), cobalt (Co), copper (Cu), manganese (Mn) and zinc (Zn), and higher values of redox potential (Eh) were found at the reference stations. According to organic enrichment classification based on S2− and Eh values, sediments of the three fish farms in the period when there were fish in the cages fell into the oxic category, whereas sediments in the August (no fish farming activity) fell into the normal category. Also, it was found in the August that most of sediment quality parameters at the 0 m stations had close values to those at the reference stations. These results revealed that a three-month period when there were no fish in the cages allows for sediments to return to reference station conditions.

Most lost fishing gear is made of non-biodegradable plastics that may sink to the sea floor or drift around in currents. It may remain unnoticed until it shows up on coral reefs, beaches and in other coastal habitats. Stony corals have fragile skeletons and soft tissues that can easily become damaged when they get in contact with lost fishing gear. During a dive survey around Koh Tao, a small island in the Gulf of Thailand, the impact of lost fishing gear (nets, ropes, cages, lines) was studied on corals representing six different growth forms: branching, encrusting, foliaceous, free-living, laminar, and massive. Most gear (>95%) contained plastic. Besides absence of damage (ND), three categories of coral damage were assessed: fresh tissue loss (FTL), tissue loss with algal growth (TLAG), and fragmentation (FR). The position of the corals in relation to the fishing gear was recorded as either growing underneath (Un) or on top (On), whereas corals adjacent to the gear (Ad) were used as controls. Nets formed the dominant type of lost gear, followed by ropes, lines and cages, respectively. Branching corals were most commonly found in contact with the gear and also around it. Tubastraea micranthus was the most commonly encountered coral species, either Un, On, or Ad. Corals underneath gear showed most damage, which predominantly consisted of tissue loss. Fragmentation was less common than expected, which may be related to the low fragility of T. micranthus as dominant branching species. Even if nets serve as substrate for corals, it is recommended to remove them from reefs, where they form a major component of the plastic pollution and cause damage to corals and other reef organisms.

Particulate wastes drive benthic organic enrichment from cage fish farming. Differentiation between faeces and uneaten feed estimates at cage level are of great value to both economize the feeding process and reduce waste. This study estimates the particulate waste outflowing cages at different depths and orientations, and the wasted feed component by combining in situ measurements and modelling. Particulate matter flux (PMF) was greater vertically through the cage bottoms (60.89%), but lateral outflow was also substantial (39.11%). PMF occurs all around the cages, and the influence of the mainstream current was low. Wasted feed was greatly variable, reaching high values (about 50% of supplied feed. The self-application of feed wastage monitoring and estimates by fish farmers is recommended to improve sustainability.

To reduce negative environmental impacts from human aquaculture activities, the red alga Gracilaria lemaneiformis was co-cultured with the fish Pseudosciaena crocea in an integrated multi-trophic aquaculture (IMTA) system for 35d in Yantian Bay. The eutrophication index value decreased from 14.5 to 8.4 after seaweeds were co-cultured in cage farming areas, which indicated that the eutrophic water column in Yantian Bay could be mediated by IMTA. Total DIN and DIP of the tidal input and output were 9.23kg, 0.19kg and 11.08kg, and 0.27kg, respectively. Total 5.24kg of dissolved N and 0.81kg of dissolved P were released from IMTA system. These results indicate that G. lemaneiformis co-cultured in IMTA system could not completely remove all excess nutrients. In theory, at least 324.48kg of seaweed seedlings would be required to balance excess nutrients generated from fish cages.

Interannual variability (2003–2008) of meiofaunal assemblages were analyzed in sediments beneath fish cages (Impact group) and in areas not affected by aquaculture activities (Control group). Organisms responded with spatial and seasonal variation in meiofauna assemblages, with an abrupt increase of abundances in locations beneath fish cages throughout the study period. This increase was greater during the last sampling year (2008) and mainly due to high abundances of nematodes. Univariate analyses showed differences between control and impacted sites at both sites, however, only significant variations were found in Los Gigantes, which are consistent with seasonal meiofauna variations throughout the study period. These results are partially explained by differences in current velocity between both sampling areas. The Ne/Co index showed the same trend and it seems to be a reliable index in sediment slightly affected by aquaculture wastes. This index is especially recommended in oligotrophic areas (e.g. Canary Islands) where meiofaunal assemblages are poorly represented in terms of abundances.

Finfish cage culture is the most predominant form of mariculture. The rapid expansion of fish cage culture systems has raised concerns about their environmental impact, such as nutrient release. In this study, for the first time, we estimated the release of nitrogen (N) and phosphorus (P) from fish cage culture in Daya Bay, southern China, by constructing N and P budget models based on a mass balance principle. In addition, the contribution and importance of nutrients from fish culture and other nutrient sources, including submarine groundwater discharge, benthic sediments, local rivers, and atmospheric deposition were assessed. The annual amount of N and P released from fish cage culture was 205.6 metric tons (hereafter tons) of N and 39.2 tons of P, including 142.7 tons of dissolved inorganic nitrogen (DIN) and 15.1 tons of dissolved inorganic phosphorus (DIP). Among the analyzed nutrient sources, the contributions of DIN and DIP from fish culture were 7.0% and 2.7%, respectively. For cages consuming conventional trash fish, 142 kg of N and 26 kg of P were released into the environment per ton of fish products, much higher than the values (72 kg N and 17.3 kg P) for cages using formulated feed. In fish culture, the dissolved nutrients were more N rich, but the particulate nutrients were more P rich. The ratio of cage-derived N and P was 21.1, higher than the ratio of coastal seawater (27.1), indicating that cage culture may also impact the local nutrient forms around farming regions. Oyster cultivation and harvest removed 126.3 tons of N and 35.1 tons of P from of the bay. Replacing trash fish with formulated feed and co-culturing of nutrient extractive species (e.g., bivalves, macroalgae) and deposit-feeding species (e.g., sea cucumber) in fish culture zones can be efficient nutrient mitigation strategies.

Combining GIS with neuro-fuzzy modeling has the advantage that expert scientific knowledge in coastal aquaculture activities can be incorporated into a geospatial model to classify areas particularly vulnerable to pollutants. Data on the physical environment and its suitability for aquaculture in an Irish fjard, which is host to a number of different aquaculture activities, were derived from a three-dimensional hydrodynamic and GIS models. Subsequent incorporation into environmental vulnerability models, based on neuro-fuzzy techniques, highlighted localities particularly vulnerable to aquaculture development. The models produced an overall classification accuracy of 85.71%, with a Kappa coefficient of agreement of 81%, and were sensitive to different input parameters. A statistical comparison between vulnerability scores and nitrogen concentrations in sediment associated with salmon cages showed good correlation. Neuro-fuzzy techniques within GIS modeling classify vulnerability of coastal regions appropriately and have a role in policy decisions for aquaculture site selection.

The impacts of fish cage culture and suspended oyster culture on macrobenthic communities were investigated in Xiangshan Bay, China, on a seasonal basis from January to October of 2015. Samples were collected from a fish cage farm, a suspended oyster farm, and two corresponding reference sites. Two-way ANOVA results showed that species richness, abundance, biomass, and Shannon–Wiener diversity differed significantly between the four different investigated areas, and different seasons as well. Cluster analysis showed that macrobenthic community composition in the fish and oyster culture areas significantly differed from that in the reference sites, respectively. Trophic structure of macrobenthos in the fish and oyster culture areas mostly clustered together owing to higher abundance and biomass of surface-deposit feeders and carnivores. The macrobenthic communities and feeding guilds correlated highly with environmental factors, such as bottom water chlorophyll a and nutrients, as well as sediment total organic carbon. Although integrated multi-trophic aquaculture is regarded as a suitable approach to coordinate desirable economic, social, and environmentally sustainable outcomes, coastal ecosystems may suffer from large-scale nutrient enrichment due to aquaculture and other human activities, which should not be considered in isolation.

Particulate organic waste, originating from fish cultured in cages, often brings about negative effects on the structure of bottom sediments. These effects result in deterioration of the aquatic environment. In the present study, a three-dimensional numerical model was coupled with developed submodels of fish cage drag and aquaculture waste diffusion to simulate the hydrodynamic environment and distribution of particulate organic waste. Numerical simulation results showed that fish cages exerted an influence on both the velocity and direction of water current; the reduction of water current velocity was a maximum of approximately 38%. The contribution of fish fecal matter was dominant during winter (ca. 80%), whereas waste fish feed was the main source in other seasons. The distribution of organic waste near the sea bottom indicated that organic waste not only loaded mainly on the sea floor just beneath the fish cages but also diffused towards the coastlines.

Offshore fish farms have been active inside the Monastir Bay, Hammemet Gulf for over 10 years, but their environmental impact is still unknown. This study focuses on the evaluation of the fish farming activity impact in the Monastir Bay as revealed by geochemical and benthic foraminiferal data. Samples were collected around three fish cages at different water depths. Total organic carbon (TOC) and total phosphate (TP) in the sediment show higher values beneath the fish cages and decrease proportionally with distance from the cages. Living foraminiferal assemblages around fish farms are dominated by stress-tolerant species with higher abundances of Ammonia tepida, Rosalina bradyi, Elphidium crispum, and Peneroplis planatus. On the basis of our results, A. tepida and Quinqueloculina seminula are confirmed to be tolerant to elevated nutriment content, while Ammonia parkinsoniana seems to be more sensitive to organic enrichment. We also test the Foram-AMBI that is revealed to be a very promising tool by which evaluating the ecological quality status of marine sediment. The results of the present study confirm the suitability of living benthic foraminifera as bioindicators of organic enrichment induced by aquaculture activities.