We investigated the impacts of effluent discharge from small flow-through fish farms on stream water characteristics, the benthic invertebrate community, whole-system nitrate uptake, and ecosystem metabolism of three tropical headwater streams in southeastern Brazil. Effluents were moderately, i.e. up to 20-fold enriched in particulate organic matter (POM) and inorganic nutrients in comparison to stream water at reference sites. Due to high dilution with stream water, effluent discharge resulted in up to 2.0-fold increases in stream water POM and up to 1.8-fold increases in inorganic nutrients only. Moderate impacts on the benthic invertebrate community were detected at one stream only. There was no consistent pattern of effluent impact on whole-stream nitrate uptake. Ecosystem metabolism, however, was clearly affected by effluent discharge. Stream reaches impacted by effluents exhibited significantly increased community respiration and primary productivity, stressing the importance of ecologically sound best management practices for small fish farms in the tropics.

Six cruises were conducted in a fish farm adjacent to the Ninghai Power Plant in Xiangshan Bay, East China Sea. Fish farming significantly increased NH4+, DIP, and TOC concentrations, while it significantly decreased the DO level. These increase/decrease trends were more pronounced in warmer seasons. Although culture practices did not significantly increase phytoplankton density, it drastically enhanced dinoflagellate abundance and domination. Significant differences in species diversity and community composition between the cages and the control area were also observed. Temperature elevation caused by thermal discharge associated with eutrophication resulted in a dominant species shift from diatoms alone to dinoflagellates and diatoms. This is the first report of stress-induced toxic dinoflagellate (Prorocentrum minimum) blooms in winter and the winter–spring transition in this bay. Therefore, the effects of aquaculture activity and power plant construction in such a eutrophic, semi-enclosed bay require further attention.

We examine macrofaunal and physico-chemical responses to organic enrichment beneath salmon farms in contrasting flow environments, and reveal pronounced flow-related differences in the magnitude and spatial extent of effects. Total macrofaunal abundances at high flow sites were nearly an order of magnitude greater than at comparable low flow sites, representing a significant benthic biomass. These very high abundances occurred in conjunction with moderate-to-high species richness, and were evident in the absence of appreciable organic matter accumulation. Biological responses to increasing sulfide were variable; however a significant biological threshold was evident at 1500μM. Macrofaunal responses at high flow sites differed substantially from the Pearson–Rosenberg model. The atypical ecological conditions were attributed to (i) limited accumulation of fine sediments, (ii) maintenance of aerobic conditions in near-surface sediments, and (iii) an abundant food supply. Thus, enhanced resilience to organic waste at well-flushed sites appears related to both biological and physical processes.

Marine fish farms could cause environmental disturbances on the sediment due to uneaten food and fish faeces that impact the marine benthos. Polychaete assemblages are considered good indicators of environmental perturbations. The present study aimed to establish groups of polychaetes as potential indicators of fish farm pollution. This study was carried out in ten fish farms along the Spanish coast. Changes in polychaete assemblage were analyzed with meta-analysis and multivariate techniques. Abundance, richness and diversity showed significant decreases under fish farm conditions. Distribution patterns of polychaetes responded to combinations of physicochemical variables. The main ones are sulfide concentration, silt and clays percentage, and stable nitrogen isotope ratio. The results showed that some families are tolerant, Capitellidae, Dorvilleidae, Glyceridae, Nereididae, Oweniidae and Spionidae; while others are sensitive to fish farm pollution, Magelonidae, Maldanidae, Nephtyidae, Onuphidae, Paralacydoniidae, Paraonide, Sabellidae and also Cirratulidae in spite of being reported as a tolerant family.