peer reviewed | Soil-borne diseases have become increasingly problematic for farmers producing crops intensively under protected agriculture. Although soil fumigants are convenient and effective for minimizing the impact of soil-borne disease, they are most often detrimental to beneficial soil microorganisms. Previous research showed that bio-activation of soil using biological control agents present in biofertilizers or organic fertilizers offered promise as a strategy for controlling soil-borne pathogens when the soil was bio-activated after fumigation. Our research sought to determine how bio-activation can selectively inhibit pathogens while promoting the recovery of beneficial microbes. We monitored changes in the soil's physicochemical properties, its microbial community and reductions in soil-borne pathogens. We found that the population density of Fusarium and Phytophthora were significantly reduced and tomato yield was significantly increased when the soil was bio-activated. Soil pH and soil catalase activity were significantly increased, and the soil's microbial community structure was changed, which may have enhanced the soil's ability to reduce Fusarium and Phytophthora. Our results showed that soil microbial diversity and relative abundance of beneficial microorganisms (such as Sphingomonas, Bacillus, Mortierella and Trichoderma) increased shortly after bio-activation of the soil, and were significantly and positively correlated with pathogen suppression. The reduction in pathogens may have been due to a combination of fumigation-fertilizer that reduced pathogens directly, or the indirect effect of an optimized soil microbiome that improved the soil's non-biological factors (such as soil pH, fertility structure), enhanced the soil's functional properties and increased tomato yield.

peer reviewed | The persistence of pathogenic Agrobacterium strains as soil-associated saprophytes may cause an inconsistency in the efficacy of the biocontrol inoculants under field condition. The study of the interaction occurring in the rhizosphere between the beneficial and the pathogenic microbes is thus interesting for the development of effective biopesticides for the management of crown gall disease. However, very little is still known about the influence of these complex interactions on the biocontrol determinants of beneficial bacteria, especially Bacillus strains. This study aimed to evaluate the effect of the soil borne pathogen Agrobacterium tumefaciens C58 on root colonization and lipopeptide production by Bacillus velezensis strain 32a during interaction with tomato plants. Results show that the presence of A. tumefaciens C58 positively impacted the root colonization level of the Bacillus strain. However, negative impact on surfactin production was observed in Agrobacterium-treated seedling, compared with control. Further investigation suggests that these modulations are due to a modified tomato root exudate composition during the tripartite interaction. Thus, this work contributes to enhance the knowledge on the impact of interspecies interaction on the ecological fitness of Bacillus cells living in the rhizosphere. © 2020, Springer-Verlag GmbH Germany, part of Springer Nature.

Seven experiments carried out in Italy and Spain have been used to parameterising a stomatal conductance model and establishing exposure– and dose–response relationships for yield and quality of tomato with the main goal of setting O3 critical levels (CLe). CLe with confidence intervals, between brackets, were set at an accumulated hourly O3 exposure over 40 nl l−1, AOT40 = 8.4 (1.2, 15.6) ppm h and a phytotoxic ozone dose above a threshold of 6 nmol m−2 s−1, POD6 = 2.7 (0.8, 4.6) mmol m−2 for yield and AOT40 = 18.7 (8.5, 28.8) ppm h and POD6 = 4.1 (2.0, 6.2) mmol m−2 for quality, both indices performing equally well. CLe confidence intervals provide information on the quality of the dataset and should be included in future calculations of O3 CLe for improving current methodologies.These CLe, derived for sensitive tomato cultivars, should not be applied for quantifying O3-induced losses at the risk of making important overestimations of the economical losses associated with O3 pollution.