Nonpoint source phosphorus (P) and nitrogen (N) pollution from agriculture is a global concern. Planting a cover crop after harvesting annual crops such as maize may help mitigate nutrient transport risk to surface and groundwater. Few studies have focused on the impact of a winter rye cover crop on both surface runoff (SR) and tile drainage (TD) water quality. Here, we measured N and P losses in SR and TD from maize plots grown with and without a winter rye cover crop. Four plots (46 × 23 m) in northern New York, USA, equipped with automated SR and TD flow monitoring were planted with winter rye (Secale cereal) in 2016 and 2017 after maize silage harvest. Plots were managed as typical silage fields for dairy farms in the region and received fertilizer and manure applications. Dissolved reactive P (DRP), total P (TP), nitrate-N, total N (TN), and total suspended solids (TSS) loads were monitored from 4/7/16 to 6/29/17. Cumulative SR (volumetric depth equivalent) was 1.8-fold lower for rye compared to control plots. Although runoff and loading were variable, cumulative TSS, TP, and DRP losses were approximately 3-fold lower for rye plots compared to control. Cumulative TN and nitrate-N loads for TD were similar; however, cumulative TN loss for SR was lower for rye plots. Surface runoff was the main pathway of P loss (> 90% of DRP and TP loss) with > 90% of cumulative P exported from 2017 snowmelt events. Results suggest winter rye mitigated N and P transport risk in SR compared to the common practice of leaving maize silage fields bare after harvest.

Phytoremediation employs plants to sequester, degrade, and transform contaminants. This remediation technology depends on sufficient plant growth, often not achievable with high contaminant concentrations. One way to improve plant growth on impacted soils is by using plant growth-promoting rhizobacteria (PGPR). PGPR are naturally occurring soil microbes that stimulate plant growth through variety of means. We examined what changes in gene expression occurred in a grass species Secale cereale treated with PGPR, Pseudomonas putida PGPR (UW4), grown in petroleum hydrocarbon (PHC) impacted soil. UW4 promoted plant growth on the PHC impacted soil. Using differential display polymerase chain reaction (ddPCR), six genes were identified based on their altered expression as an effect of PHC exposure and plant PGPR treatment. The changes in levels of expression of selected genes were measured using quantitative PCR (qPCR). There was upregulation of all six genes examined, two of which were statistically significant. In roots, two genes were upregulated significantly and one gene appeared to be downregulated.

Freezing-thawing and saline-alkaline are the major abiotic stress for the pasture in most high-latitude areas, which are serious threats to the yield of pasture. In this study, the osmotic adjustment substances, membrane lipid peroxidation, and antioxidant enzymes activities of rye (Secale cereale L., cv. Dongmu-70) seedlings under different treatments: CK (no treatment), SC (Na₂CO₃ treatment), FT (freezing-thawing treatment), and FT+SC (combined Na₂CO₃ and freezing-thawing treatments), were investigated. At the freezing stage, the content of MDA and proline, the activity of APX, SOD, and POD increased with the decrease of the temperature in the leaves of rye seedlings in FT and FT+SC treatments and reached the maximum value at − 5 °C. In addition, the content of protein and H₂O₂, CAT activity reached the maximum value at 0 °C; the damage is larger under low temperature stress at 0 °C and − 5 °C in rye seedling. At the thawing stage, the content of MDA and H₂O₂ in seedling leaves decreased in FT and FT + SC treatments. These results demonstrated that proline content and antioxidant enzymes activities could play an important role in protecting cytomembrane and scavenging ROS respectively in rye under alkaline salt stress and freezing-thawing stress. The result also indicated rye seedlings were subjected to a freezing-thawing stress which resulted in a reversible (recoverable) injury.

Preliminary results and methodology related to the use of the fluorescence in situ hybridization technique for detection of plants hybrids are presented. Total genomic DNA probe preparation and the non-isotopic biotin probe labelling technique is presented. The use of an excess of unlabelled competitor DNA from a related plant species gives more constant results in determining whole plant genomes with in situ experiments on plant hybrids. Preliminary results of flourescence in situ hybridization for detecting alien rye chromatin and localisation on metaphase chromosomes and interphase nuclei in the bread wheat cultivar Yugoslavia are described. The methodology for detection of interspecies hybrids of common and sessile oak with flourescence in situ hybridization is given. The advantege of the use of total genomic biotin labelled probes for in situ hybridization is that it requires less effort than preparing species specific probes and the ease of interpretation of the results. The technique of fluorescence in situ hybridization is less species than other cytological techniques for higher plants and almost the same methodology can be used for detection of oak hybrids. The extraction of a high quantity of species specific DNA of high quality and probe preparation and labelling are the most important step.