Mobile genetic elements (MGEs) such as plasmids or integrative conjugative elements (ICEs) are widely involved in the horizontal transfer of antibiotic resistant genes (ARGs), but their environmental host-range and reservoirs remain poorly known, as mainly assessed through the analysis of culturable and clinical bacterial isolates. In this study, we used a gradual approach for determining the environmental abundance and host-range of ICEs belonging to the SXT/R391 family, otherwise well known to bring ARGs in Vibrio spp. epidemic clones and other pathogens. First, by screening a set of aquatic bacteria libraries covering 1794 strains, we found that almost 1% of the isolates hosted an SXT/R391 element, all belonging to a narrow group of non-O1/non-O139 Vibrio cholerae. However, when SXT/R391 ICEs were then quantified in various aquatic communities, they appeared to be ubiquitous and relatively abundant, from 10⁻⁶ to 10⁻³ ICE copies per 16 S rDNA. Finally, the molecular exploration of the SXT/R391 host-range in two river ecosystems impacted by anthropogenic activities, using the single-cell genomic approach epicPCR, revealed several new SXT/R391 hosts mostly in the Proteobacteria phylum. Some, such as the pathogen Arcobacter cryaerophilus (Campylobacteraceae), have only been encountered in discharged treated wastewaters and downstream river waters, thus revealing a likely anthropogenic origin. Others, such as the non-pathogenic bacterium Neptunomonas acidivorans (Oceanospirillaceae), were solely identified in rivers waters upstream and downstream the treated wastewaters discharge points and may intrinsically belong to the SXT/R391 environmental reservoir. This work points out that not only the ICEs of the SXT/R391 family are more abundant in the environment than anticipated, but also that a variety of unsuspected hosts may well represent a missing link in the environmental dissemination of MGEs from and to bacteria of anthropogenic origin.

Natural aging alters the surface physicochemical properties of biochars, which can affect the retention of heavy metals. This work investigated the effect of biochar aging on stabilization of heavy metals (Cd and Ni) and soil enzyme activities simulated with laboratory wet–dry (WD) and freeze–thaw (FT) cycling. A wheat straw (WS) biochar and a corn straw (CS) biochar were subjected to 30 WD or FT cycles, and Cd- and Ni-contaminated alkaline soils amended with the two fresh biochars (at 5% w/w) were subjected to 30-day constant moisture incubation and 30 WD or FT cycles. WD and FT aging caused slight reduction in the pH of the biochars, significant increases in their O contents and surface areas, and formation of new carbonate minerals. WS biochar was more effective than CS biochar at reducing the phytoavailable Cd in the soil, with reduction of 12.1%, 14.6%, and 12.9% under constant moisture incubation, WD aging, and FT aging, respectively. Reduction in phytoavailability of Ni by the addition of biochars was observed only under WD aging, by 17.0% and 18.5% in the presence of WS and CS biochars, respectively. Biochar amendment also reduced the distribution of Cd in the acid soluble and reducible fractions in all aging regimes. The addition of biochars decreased catalase activity in almost all aging regimes and invertase activity under FT aging, but increased urease activity under FT aging. Comparison of the enzyme activities in the soils amended with biochars under constant moisture and accelerated aging conditions indicates WD aging significantly decreased the activities of catalase, invertase, and urease in all treatments, while FT aging significantly increased urease activity in all treatments. These findings suggest that biochars can stabilize Cd in alkaline soils under changing environmental conditions, although the activities of some soil enzymes could be negatively impacted.

This study is focused on oxytetracycline (OTC) degradation by direct photolysis (UV–C) and photobased advanced oxidation processes (AOPs) (UV–C/H₂O₂ and UV-C/S₂O₈²⁻). OTC degradation pathways were revealed by LC-MS/MS and GC-MS/MS analyses. The evolution/degradation profiles of 12 detected byproducts were correlated with changes in biodegradability and toxicity toward Vibrio fischeri recorded during the treatment. Both photobased AOPs yielded higher OTC degradation and mineralization rates than direct photolysis. The OTC degradation pathway was found to be rather specific regarding the main reactive species (HO• or SO₄•⁻)/mechanism, yielding different patterns in toxicity changes, while biodegradability profiles were less affected. Biodegradability was correlated with the observed degradation and mineralization kinetics. The recorded toxicity changes indicate that byproducts formed by initial OTC degradation are more toxic than the parent pollutant. The prolonged treatment resulted in the formation of byproducts that contributed to a decrease in toxicity and an increase in biodegradability, as particularly emphasized in the case of UV-C/S₂O₈²⁻.

Freshwater ecosystems are negatively impacted by various pollutants, from agricultural, urban and industrial wastewater, with metals being one of the largest concerns. Moreover, freshwater ecosystems are often affected by alien species introductions that can modify habitats and trophic relationships. Accordingly, the threat posed by metals interacts with those by alien species, since the latter can accumulate and transfer these substances across the food web to higher trophic levels. How metals transfer within such communities is little studied. We analysed the concentration of 14 metals/metalloids (Al, As, Cd, Co, Cr, Cu, Fe, Hg, Mg, Mn, Ni, Pb, Se, Zn, hereafter ‘metal(s)’) of eight fish and three crustacean species co-existing in the Arno River (Central Italy), most of which were alien. To assess the pathway of contaminants within the community, we coupled metal analysis with carbon and nitrogen stable isotope analysis derived from the same specimens. Crustaceans showed higher metal concentration than fish, except for Cd, Hg and Se that were higher in fish. We found evidence of trophic transfer for six metals (Cd, Cr, Hg, Mg, Se, Zn). Additionally, ontogenetic differences and differences among various fish tissues (muscle, liver, and gills) were found in metals concentration. Considerable biomagnification along the trophic chain was found for Hg, while other metals were found to biodilute. Using stable isotopes and Hg as a third diet tracer, we refined the estimations of consumed preys in the diet previously reconstructed with stable isotope mixing models. Alien species reach high biomass and can both survive to and accumulate high pollutants concentrations, potentially posing a risk for their predators and humans. A combined effect of environmental filtering and increased competition may potentially contribute to the disappearance of native species with lower tolerances.

Humans benefit from nuclear technologies but consequently experience nuclear disasters or side effects of iatrogenic radiation. Hematopoietic system injury first arises upon radiation exposure. As an intricate new layer of genetic control, the posttranscriptional m⁶A modification of RNA has recently come under investigation and has been demonstrated to play pivotal roles in multiple physiological and pathological processes. However, how the m⁶A methylome functions in the hematopoietic system after irradiation remains ambiguous. Here, we uncovered the time-varying epitranscriptome-wide m⁶A methylome and transcriptome alterations in γ-ray-exposed mouse bone marrow. 4 Gy γ-irradiation rapidly (5 min and 2 h) and severely impaired the mouse hematopoietic system, including spleen and thymus weight, blood components, tissue inflammation and malondialdehyde (MDA) levels. The m⁶A content and expression of m⁶A related enzymes were altered. Gamma-irradiation triggered dynamic and reversible m⁶A modification profiles and altered mRNA expression, where both m⁶A fold-enrichment and mRNA expression most followed the (5 min_up/2 h_down) pattern. The CDS enrichment region preferentially upregulated m⁶A peaks at 5 min. Moreover, the main GO and KEGG pathways were closely related to metabolism and the classical radiation response. Finally, m⁶A modifications correlated with transcriptional regulation of genes in multiple aspects. Blocking the expression of m⁶A demethylases FTO and ALKBH5 mitigated radiation hematopoietic toxicity. Together, our findings present the comprehensive landscape of mRNA m⁶A methylation in the mouse hematopoietic system in response to γ-irradiation, shedding light on the significance of m⁶A modifications in mammalian radiobiology. Regulation of the epitranscriptome may be exploited as a strategy against radiation damage.

China is experiencing severe tropospheric ozone pollution, especially during the summer period in cities. Previous studies have assessed the role of meteorological conditions and anthropogenic precursors in shaping the diurnal variation of ozone concentration in some Chinese cities or the spatial patterns of daytime ozone concentration, but less is known about the spatial variation and main regulators of the diurnal cycle of summer ozone concentrations in Chinese cities. Using monitoring data from 367 cities, we analyzed the spatial patterns and main regulators of daytime maximum, nighttime minimum and diurnal difference of summer (June–August) ozone concentration during 2015–2019. National mean values and standard deviations of daytime maximum and nighttime minimum of summer surface ozone concentration were 124.1 ± 27.5 and 33.4 ± 13.0 μg m⁻³, resulting in a diurnal difference of 90.7 ± 25.2 μg m⁻³. High values of daytime maximum, nighttime minimum, and diurnal difference of summer ozone concentration occurred in cities in northern China, especially in the North China Plain, and several city agglomerations in southern China. Daytime maximum ozone concentration was higher in cities with higher daytime PM₂.₅ and NO₂ concentrations, lower daytime precipitation and lower elevation. Nighttime minimum ozone concentration increased with lower nighttime precipitation, lower NO₂ concentration and CO concentration, higher nighttime maximum PM₂.₅ concentration and higher elevation. Diurnal difference of ozone concentration increased with lower elevation, lower daytime precipitation, and higher diurnal difference of CO and NO₂ concentrations. Our findings highlight different regulators for daytime and nighttime ozone and imply the need of joint regulation of PM₂.₅ and NO₂ emissions to control ozone pollution.

Sustainable agriculture practices and integrated pest management for avoiding environmental pollution are necessary to maintain a high yield in vineyard areas. Pesticide residues in groundwater in a vineyard area of La Rioja (Spain) have been evaluated in previous years, and they could now have varied after farmers have adopted the different measures recommended. Accordingly, this research's objectives were (i) to evaluate the occurrence and seasonal distribution (spring, summer, and autumn samplings) of pesticides (36) plus their degradation products (DP) (11) in water and soil samples (23 + 15) in La Rioja (Northern Spain), and (ii) to compare the current water quality (2019) with that determined previously (2011). A multi-residue method based on solid phase extraction (for water samples) or solid liquid extraction (for soil samples) and high-performance liquid chromatography coupled to mass spectrometry (HPLC-MS) was used to determine and quantify pesticides. The results reveal the presence in waters of 30 compounds from those selected (15 fungicides + 2 DP, 7 insecticides + 1 DP, and 3 herbicides +2 DP), with 14 of them at concentrations > 0.1 μg L⁻¹ (water quality threshold for human consumption). The highest number of compounds was detected in summer (waters) and spring (soils). The pesticides most frequently detected in water samples were the fungicides metalaxyl, tebuconazole, and boscalid, with the last one being the compound found in the highest number of soil samples. The comparison of water pollution in 2011 and 2019 indicates a significant decrease in the total concentration of herbicides, fungicides and insecticides in 95–100%, 76–90%, and 42–85% of samples in the three campaigns, respectively. The results indicate that an optimized and sustainable use of pesticides in intensive and high-yield agricultural areas could reduce environmental pollution.

Perfluorinated compounds (PFCs), as emerging persistent pollutants, can exist for a long time in the environment due to their high stability. PFCs have been detected in drinking water, wastewater, and the human body. Studies have shown that PFCs pose a threat to human health and the ecological environment, which is expected to be listed in new drinking water regulations. Traditional processes, including coagulation, biological filtration, chlorination, ozonolysis, and ultraviolet light have ineffective removal efficiency on PFCs; however, advanced oxidation processes (AOP) based on ultraviolet (UV) light have good application prospects for the removal of PFCs. This study provides an overview of the removal of PFCs by UV-based AOPs; systematically introduces the research status of various UV-based AOPs from the perspectives of degradation pathways, degradation efficiency, influencing factors, formation of by-products; and comprehensively compares these different UV-based AOPs. Finally, the limitations of existing research and future research needs are discussed. This review aims to provide an overview for a better understanding of the degradation status and prospects of UV-based AOPs for the degradation of PFCs.

Enhanced release of phosphorus (P) from soils with snowmelt flooding poses a threat of eutrophication to waterbodies in cold climatic regions. Reductions in P losses with various soil amendments has been reported, however effectiveness of MgSO₄ has not been studied under snowmelt flooding. This study examined (a) the P release enhancement with flooding in relation to initial soil P status and (b) the effectiveness of MgSO₄ at two rates in reducing P release to floodwater under simulated snowmelt flooding. Intact soil monoliths were collected from eight agricultural fields from Southern Manitoba, Canada. Unamended and MgSO₄ surface-amended monoliths (2.5 and 5.0 Mg ha⁻¹) in triplicates were pre-incubated for 7 days, then flooded and incubated (4 °C) for 56 days. Pore water and floodwater samples collected at 7-day intervals were analyzed for dissolved reactive P (DRP), pH, Ca, Mg, Fe and Mn. Redox potential (Eh) was measured on each day of sampling. Representative soil samples collected from each field were analyzed for Olsen and Mehlich 3-P. Simulated snowmelt flooding enhanced the mobility of soil P with approximately 1.2–1.6 -fold increase in pore water DRP concentration from 0 to 21 days after flooding. Mehlich-3 P content showed a strong relationship with the pore water DRP concentrations suggesting its potential as a predictor of P loss risk during prolonged flooding. Surface application of MgSO₄ reduced the P release to pore water and floodwater. The 2.5 Mg ha⁻¹ rate was more effective than the higher rate with a 21–75% reduction in average pore water DRP, across soils. Soil monoliths amended with MgSO₄ maintained a higher Eh, and had greater pore water Ca and Mg concentrations, which may have reduced redox-induced P release and favored re-precipitation of P with Ca and Mg, thus decreasing DRP concentrations in pore water and floodwater.

Deamination is ubiquitous in nature and has important biological significance. Leucobacter triazinivorans JW-1, recently isolated from sludge, can rapidly degrade s-triazine herbicides. The responsible enzymes, however, have not been purified and characterized.Herein, we purified an amidohydrolase, i.e., N-isopropylammelide isopropylaminohydrolase (AtzC) from JW-1 cells by ammonium sulfate precipitation and three chromatography steps. The purified AtzC catalyzed amidohydrolysis of N-isopropylammelide to cyanuric acid. The optimal catalytic conditions of the purified AtzC were 42 °C and pH 7.0, and the Kₘ and Vₘₐₓ of AtzC was 0.811 mM and 28.19 mmol/min·mg. AtzC could catalyze amidohydrolysis of an N-alkyl substituent from dihydroxy s-triazines to cyanuric acid. Molecular docking and structural alignments were used to infer AtzC catalytic mechanism. The structural architecture of AtzC resembled that of cytosine deaminase in class III amidohydrolase, with a single Zn²⁺ coordinated by His and Asp. Interestingly, the AtzC lacks an acidic residue putatively to activate water for hydrolysis as compared to the other amidohydrolases. His253 in AtzC probably functions as a single general acid-base catalyst. These findings further enhance our understanding how aminohydrolases catalyze the metabolism of s-triazine herbicides.