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Impact of untreated urban waste on the prevalence and antibiotic resistance profiles of human opportunistic pathogens in agricultural soils from Burkina Faso
2017
Youenou, Benjamin | Hien, Edmond | Deredjian, Amélie | Brothier, Elisabeth | Favre-Bonté, Sabine | Nazaret, Sylvie | Laboratoire d'Ecologie Microbienne - UMR 5557 (LEM) ; Institut National de la Recherche Agronomique (INRA)-Université Claude Bernard Lyon 1 (UCBL) ; Université de Lyon-Université de Lyon-Ecole Nationale Vétérinaire de Lyon (ENVL)-VetAgro Sup - Institut national d'enseignement supérieur et de recherche en alimentation, santé animale, sciences agronomiques et de l'environnement (VAS)-Centre National de la Recherche Scientifique (CNRS) | Université de Lyon
International audience | This study examined the long-term effects of the landfill disposal of untreated urban waste for soil fertilization on the prevalence and antibiotic resistance profiles of various human opportunistic pathogens in soils from Burkina Faso. Samples were collected at three sites in the periphery of Ouagadougou during two campaigns in 2008 and 2011. At each site, amendment led to changes in physico-chemical characteristics as shown by the increase in pH, CEC, total C, total N, and metal contents. Similarly, the numbers of total heterotrophic bacteria were higher in the amended fields than in the control ones. No sanitation indicators, i.e., coliforms, Staphylococci, and Enterococci, were detected. Pseudomonas aeruginosa and Burkholderia cepacia complex (Bcc) were d e t e c t e d a t a l o w l e v e l i n o n e a m e n d e d f i e l d. Stenotrophomonas maltophilia was detected from both campaigns at the three sites in the amended fields and only once in an unamended field. Diversity analysis showed some oppor-tunistic pathogen isolates to be closely related to reference clinical strains responsible for nosocomial-or community-acquired infections in Northern countries. Antibiotic resistance tests showed that P. aeruginosa and Bcc isolates had a wild-type phenotype and that most S. maltophilia isolates had a multi-drug resistance profile with resistance to 7 to 15 antibiotics. Then we were able to show that amendment led to an increase of some human opportunistic pathogens including multi-drug resistant isolates. Although the application of untreated urban waste increases both soil organic matter content and therefore soil fertility, the consequences of this practice on human health should be considered.
Показать больше [+] Меньше [-]An ecosystem-based approach to assess the status of Mediterranean algae-dominated shallow rocky reefs
2017
Thibaut, Thierry | Blanfuné, Aurelie | Boudouresque, Charles, F. | Personnic, Sébastien | Ruitton, Sandrine | Ballesteros, Enric | Bellan-Santini, Denise | Bianchi, Carlo Nike | Bussotti, Simona | Cebrian, Emma | Cheminée, Adrien | Culioli, Jean-Michel | Derrien-Courtel, Sandrine | Guidetti, Paolo | Harmelin-Vivien, Mireille | Hereu, Bernat | Morri, Carla | Poggiale, Jean-Christophe | Verlaque, Marc | Institut méditerranéen d'océanologie (MIO) ; Institut de Recherche pour le Développement (IRD)-Aix Marseille Université (AMU)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Toulon (UTLN)-Centre National de la Recherche Scientifique (CNRS) | Centre Alpin de Recherche sur les Réseaux Trophiques et Ecosystèmes Limniques (CARRTEL) ; Institut National de la Recherche Agronomique (INRA)-Université Savoie Mont Blanc (USMB [Université de Savoie] [Université de Chambéry]) | Centre d'Estudis Avançats de Blanes (CEAB) ; Consejo Superior de Investigaciones Cientificas [España] = Spanish National Research Council [Spain] (CSIC) | Institut méditerranéen de biodiversité et d'écologie marine et continentale (IMBE) ; Avignon Université (AU)-Aix Marseille Université (AMU)-Institut de recherche pour le développement [IRD] : UMR237-Centre National de la Recherche Scientifique (CNRS) | Department of Earth, Environmental and Life Sciences (DISTAV) ; Università degli studi di Genova = University of Genoa (UniGe) | Laboratoire de Mécanique de Lille - FRE 3723 (LML) ; Université de Lille, Sciences et Technologies-Centrale Lille-Centre National de la Recherche Scientifique (CNRS) | Ecosystèmes Côtiers Marins et Réponses aux Stress (ECOMERS) ; Université Nice Sophia Antipolis (1965 - 2019) (UNS)-Centre National de la Recherche Scientifique (CNRS)-Université Côte d'Azur (UniCA) | Réserve Naturelle des Bouches de Bonifacio ; Office Environnement Corse | Station de Biologie Marine de Concarneau ; Direction générale déléguée à la Recherche, à l’Expertise, à la Valorisation et à l’Enseignement-Formation (DGD.REVE) ; Muséum national d'Histoire naturelle (MNHN)-Muséum national d'Histoire naturelle (MNHN) | ANR-16-EBI3-0005,MARFOR,Functional Variability and Dynamics of Responses of Marine Forests to Global Change(2016)
International audience | A conceptual model was constructed for the functioning the algae-dominated rocky reef ecosystem of the Med-iterranean Sea. The Ecosystem-Based Quality Index (reef-EBQI) is based upon this model. This index meets the objectives of the EU Marine Strategy Framework Directive. It is based upon (i) the weighting of each compartment , according to its importance in the functioning of the ecosystem; (ii) biological parameters assessing the state of each compartment; (iii) the aggregation of these parameters, assessing the quality of the ecosystem functioning , for each site; (iv) and a Confidence Index measuring the reliability of the index, for each site. The reef-EBQI was used at 40 sites in the northwestern Mediterranean. It constitutes an efficient tool, because it is based upon a wide set of functional compartments, rather than upon just a few species; it is easy and inexpensive to implement, robust and not redundant with regard to already existing indices.
Показать больше [+] Меньше [-]Microplastics: an emerging contaminant in the Saigon River, Vietnam
2017
Strady, Emilie | Lisa, Lahens | Dris, Rachid | Le Thuy Chung, K | Benali, Dounia | Gasperi, Johnny | Tassin, Bruno | Institut des Géosciences de l’Environnement (IGE) ; Institut de Recherche pour le Développement (IRD)-Institut polytechnique de Grenoble - Grenoble Institute of Technology (Grenoble INP)-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National de la Recherche Scientifique (CNRS)-Université Grenoble Alpes [2016-2019] (UGA [2016-2019])-Observatoire des Sciences de l'Univers de Grenoble (Fédération OSUG) | Centre Asiatique de Recherche sur l'Eau (CARE) ; Ho Chi Minh City University of Technology [Vietnam National University, HCM] (HCMUT) ; Vietnam National University, Ho Chi Minh City / Đại học Quốc gia TP. Hồ Chí Minh (VNU-HCM)-Vietnam National University, Ho Chi Minh City / Đại học Quốc gia TP. Hồ Chí Minh (VNU-HCM) | Laboratoire Eau Environnement et Systèmes Urbains (LEESU) ; AgroParisTech-École nationale des ponts et chaussées (ENPC)-Université Paris-Est Créteil Val-de-Marne - Paris 12 (UPEC UP12)
International audience
Показать больше [+] Меньше [-]Modelling dispersal of radioactive contaminants in Arctic waters as a result of potential recovery operations on the dumped submarine K-27
2017
Karcher, Michael | Hosseini, A. | Schnur, R. | Kauker, Frank | Brown, J.E. | Dowdall, M. | Strand, P.
Of the wide variety of dumped objects containing radioactive materials in the Arctic seas, the submarine K-27 constitutes a major risk due to the large amount of highly enriched uranium onboard and its location in shallow waters. As the matter of potential operations involving raising of the submarine have entered the public arena, a priori assessment of the contamination in the Arctic marine environment that could result after a possible accident during such operations is a matter of some interest. The dispersion of contaminants within the Arctic has been assessed using a large scale hydrodynamic model for a series of plausible accident scenarios and locations under different oceanographic regimes. Results indicate that, depending primarily on the nature of a release (i.e. instantaneous or continuous), large areas of the Arctic marine environment will exhibit contamination to varying degrees.
Показать больше [+] Меньше [-]Morphology of the filtration apparatus of three planktivorous fishes and relation with ingested anthropogenic particles
2017
Collard, France | Gilbert, Bernard | Eppe, Gauthier | Roos, Laetitia | Compère, Philippe | Das, Krishna | Parmentier, Eric | Laboratoire Eau Environnement et Systèmes Urbains (LEESU) ; AgroParisTech-École nationale des ponts et chaussées (ENPC)-Université Paris-Est Créteil Val-de-Marne - Paris 12 (UPEC UP12) | CART ; Université de Liège = University of Liège = Universiteit van Luik = Universität Lüttich (ULiège) | Université de Liège = University of Liège = Universiteit van Luik = Universität Lüttich (ULiège)
International audience
Показать больше [+] Меньше [-]LCA of wet-weather emissions of an urban wastewater system: the case of the Greater Paris watershed | ACV des rejets par temps de pluie d'un système d'assainissement urbain : le cas du bassin versant du Grand Paris
2017
Risch, Eva | Gasperi, J. | Gromaire, Marie-Christine | Chebbo, Ghassan | Azimi, S. | Rocher, V. | Roux, P. | Rosenbaum, Ralph | Sinfort, C. | Information – Technologies – Analyse Environnementale – Procédés Agricoles (UMR ITAP) ; Institut national de recherche en sciences et technologies pour l'environnement et l'agriculture (IRSTEA)-Institut national d’études supérieures agronomiques de Montpellier (Montpellier SupAgro) | Laboratoire Eau Environnement et Systèmes Urbains (LEESU) ; École nationale des ponts et chaussées (ENPC)-Université Paris-Est Créteil Val-de-Marne - Paris 12 (UPEC UP12) | Université Paris-Est Créteil Val-de-Marne - Paris 12 (UPEC UP12) | SIAAP COLOMBES FRA ; Partenaires IRSTEA ; Institut national de recherche en sciences et technologies pour l'environnement et l'agriculture (IRSTEA)-Institut national de recherche en sciences et technologies pour l'environnement et l'agriculture (IRSTEA)
[Departement_IRSTEA]Ecotechnologies [TR1_IRSTEA]INSPIRE | International audience | In typical life cycle impact assessment (LCIA) studies of urban wastewater systems (UWS), average conditions are modelled but there are many annual flooding events with releases of raw sewage. Such peak conditions are not considered and present a high temporal variability which is not currently accounted for. In addition, the aggregation of the loads from several storm events could bring an issue for the impact assessment on the aquatic categories of eutrophication and ecotoxicity. Hence we are investigating the contributions of these wet weather-induced discharges along with the inclusion of temporal variability in the life cycle inventory (LCI) for UWS.
Показать больше [+] Меньше [-]An integrative approach to assess ecological risks of surface water contamination for fish populations
2017
Santos, Raphaël | Joyeux, Aude | Besnard, Aurélien | Blanchard, Christophe | Halkett, Cédric | Bony, Sylvie | Sanchez, Wilfried | Devaux, Alain | Laboratoire d'Ecologie des Hydrosystèmes Naturels et Anthropisés (LEHNA) ; Université Claude Bernard Lyon 1 (UCBL) ; Université de Lyon-Université de Lyon-École Nationale des Travaux Publics de l'État (ENTPE)-Centre National de la Recherche Scientifique (CNRS) | Ecology and Engineering of Aquatic Systems ; Haute École spécialisée de Suisse occidentale = HES-SO University of Applied Sciences and Arts Western Switzerland = Fachhochschule Westschweiz [Schweiz] (HES-SO) | Institut National de l'Environnement Industriel et des Risques (INERIS) | Centre d’Ecologie Fonctionnelle et Evolutive (CEFE) ; Université Paul-Valéry - Montpellier 3 (UPVM)-Institut National de la Recherche Agronomique (INRA)-Centre international d'études supérieures en sciences agronomiques (Montpellier SupAgro)-École Pratique des Hautes Études (EPHE) ; Université Paris Sciences et Lettres (PSL)-Université Paris Sciences et Lettres (PSL)-Université de Montpellier (UM)-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD [Occitanie])-Institut national d’études supérieures agronomiques de Montpellier (Montpellier SupAgro) | Office National des Eaux et Milieux Aquatiques ; Délégation Interrégionale Nord-Ouest | Agence de l'Eau | Stress Environnementaux et BIOsurveillance des milieux aquatiques (SEBIO) ; Institut National de l'Environnement Industriel et des Risques (INERIS)-Université de Reims Champagne-Ardenne (URCA)-Université Le Havre Normandie (ULH) ; Normandie Université (NU)-Normandie Université (NU)-SFR Condorcet ; Université de Reims Champagne-Ardenne (URCA)-Centre National de la Recherche Scientifique (CNRS)-Université de Reims Champagne-Ardenne (URCA)-Centre National de la Recherche Scientifique (CNRS) | French Ministry of Ecology and Sustainable Development 190
Contamination of aquatic ecosystems is considered as one of the main threats to global freshwater biodiversity. Within the European Water Framework Directive (EU-WFD) a particular attention is dedicated to assess ecological risks of surface water contamination and mitigation of chemical pressures on aquatic ecosystems. In this work, we evaluated ecological risks of surface water contamination for fish populations in four EU-WFD rivers through an integrative approach investigating three Lines of Evidence (chemical contamination, biomarker responses as early warning signals of contamination impacting individuals and ecological analyses as an indicator of fish community disturbances). This work illustrates through 4 case studies the complementary role of biomarkers, chemical and ecological analyses which, used in combination, provide fundamental information to understand impacts of chemical pressures that can affect fish population dynamics. We discuss the limitations of this approach and future improvements needed within the EU-WFD to assess ecological risk of river contamination for fish populations.
Показать больше [+] Меньше [-]Ozone flux in plant ecosystems: new opportunities for long-term monitoring networks to deliver ozone-risk assessments
2017
Fares, Silvano | Conte, Adriano | Chabbi, Abad | Research Centre for Forestry and Wood ; Consiglio per la Ricerca in Agricoltura e l’analisi dell’economia agraria = Council for Agricultural Research and Economics (CREA) | Unité de Recherche Pluridisciplinaire Prairies et Plantes Fourragères (P3F) ; Institut National de la Recherche Agronomique (INRA) | Ecologie fonctionnelle et écotoxicologie des agroécosystèmes (ECOSYS) ; Institut National de la Recherche Agronomique (INRA)-AgroParisTech | Université Paris-Saclay
Ozone (O3) is a photochemically formed reactive gas responsible for a decreasing carbon assimilation in plant ecosystems. Present in the atmosphere in trace concentrations (less than 100 ppbv), this molecule is capable of inhibiting carbon assimilation in agricultural and forest ecosystems. Ozone-risk assessments are typically based on manipulative experiments. Present regulations regarding critical ozone levels are mostly based on an estimated accumulated exposure over a given threshold concentration. There is however a scientific consensus over flux estimates being more accurate, because they include plant physiology analyses and different environmental parameters that control the uptake—that is, not just the exposure—of O3. While O3 is a lot more difficult to measure than other non-reactive greenhouse gases, UV-based and chemiluminescence sensors enable precise and fast measurements and are therefore highly desirable for eddy covariance studies. Using micrometeorological techniques in association with latent heat flux measurements in the field allows for the partition of ozone fluxes into the stomatal and non-stomatal sinks along the soil-plant continuum. Long-term eddy covariance measurements represent a key opportunity in estimating carbon assimilation at high-temporal resolutions, in an effort to study the effect of climate change on photosynthetic mechanisms. Our aim in this work is to describe potential of O3 flux measurement at the canopy level for ozone-risk assessment in established long-term monitoring networks.
Показать больше [+] Меньше [-]Clustering pesticides according to their molecular properties, fate, and effects by considering additional ecotoxicological parameters in the TyPol method
2017
Traoré, Harouna | Crouzet, Olivier | Mamy, Laure | Sireyjol, Christine | Rossard, Virginie | Servien, Rémi | Latrille, Eric | Martin-Laurent, Fabrice | Patureau, Dominique | Benoit, Pierre | Ecologie fonctionnelle et écotoxicologie des agroécosystèmes (ECOSYS) ; Institut National de la Recherche Agronomique (INRA)-AgroParisTech | Université Paris-Saclay | Laboratoire de Biotechnologie de l'Environnement [Narbonne] (LBE) ; Institut National de la Recherche Agronomique (INRA)-Institut national d’études supérieures agronomiques de Montpellier (Montpellier SupAgro) | ToxAlim (ToxAlim) ; Institut National de la Recherche Agronomique (INRA)-Université Toulouse III - Paul Sabatier (UT3) ; Université de Toulouse (UT)-Université de Toulouse (UT)-Ecole Nationale Vétérinaire de Toulouse (ENVT) ; Institut National Polytechnique (Toulouse) (Toulouse INP) ; Université de Toulouse (UT)-Université de Toulouse (UT)-Institut National Polytechnique (Toulouse) (Toulouse INP) ; Université de Toulouse (UT)-Ecole d'Ingénieurs de Purpan (INP - PURPAN) ; Institut National Polytechnique (Toulouse) (Toulouse INP) ; Université de Toulouse (UT)-Université de Toulouse (UT) | Agroécologie [Dijon] ; Institut National de la Recherche Agronomique (INRA)-Université de Bourgogne (UB)-AgroSup Dijon - Institut National Supérieur des Sciences Agronomiques, de l'Alimentation et de l'Environnement-Université Bourgogne Franche-Comté [COMUE] (UBFC) | This project was supported by the research program "Assessing and reducing environmental risks from plant protection products" funded by the French Ministries in charge of Ecology and Agriculture (IMPEC project)
International Symposium on Effect-Related Evaluation of Anthropogenic Trace Substances - Concepts for Genotoxicity Neurotoxicity and Endocrine Effects, Aachen, october 2015 | Understanding the fate and ecotoxicological effects of pesticides largely depends on their molecular properties. We recentlydeveloped BTyPol^ (Typology of Pollutants), a classification method of organic compounds based on statistical analyses. Itcombines several environmental (sorption coefficient, degradation half-life) and one ecotoxicological (bioconcentration factor)parameters, to structural molecular descriptors (number of atoms in the molecule, molecular surface, dipole moment, energy oforbitals, etc.). The present study attempts to extend TyPol to the ecotoxicological effects of pesticides on non-target organisms,based on data analysis from available literature and databases. It revealed that relevant ecotoxicological endpoints for terrestrialorganisms (e.g., soil microorganisms, invertebrates) that support a range of ecosystemic services are lacking as compared toaquatic organisms. The availability of ecotoxicological parameters was also lower for chronic than for acute ecotoxicity endpoints.Consequently, seven parameters were included for acute (EC50, LC50) and chronic (NOEC) ecotoxicological effects forone terrestrial (Eisenia sp.) and three aquatic (Daphnia sp., algae, Lemna sp.) organisms. In this new configuration, we usedTyPol to classify 50 pesticides into different clusters that gather molecules with similar environmental behaviors and ecotoxicologicaleffects. The classification results evidenced relationships between molecular descriptors, environmental parameters, andthe added ecotoxicological endpoints. This proof-of-concept study also showed that TyPol in silico classification can successfullyaddress new scientific questions and be expanded with other parameters of interest.
Показать больше [+] Меньше [-]Non essential element concentrations in brown grain rice : assessment by advanced data mining techniques
2017
Villafañe, Roxana Noelia | Hidalgo, Melisa Jazmín | Píccoli, Analía Beatriz | Marchevsky, Eduardo Jorge | Pellerano, Roberto Gerardo
The concentrations of 17 non-essential elements (Al, As, Ba, Be, Cd, Ce, Cr, Hg, La, Li, Pb, Sb, Sn, Sr, Th, Ti, and Tl) were determined in brown grain rice samples of two varieties: Fortuna and Largo Fino. The samples were collected from the four main producing regions of Corrientes province (Argentina). Quantitative determinations were performed by inductively coupled plasma mass spectrometry (ICP-MS), using a validated method. The contents of As, Be, Cd, Ce, Cr, Hg, Pb, Sb, Sn, Th, and Tl were very low or not detected in most samples. The non-essential element levels detected were in line with studies conducted in rice from different parts of the world. In order to characterize the influence of geographical origin in the samples, the following classification methods were carried out: linear discriminant analysis (LDA), k-nearest neighbors (k-NN), partial least squares discriminant analysis (PLS-DA), support vector machine (SVM) and random forests (RF). The best performance was obtained by using RF (96%) and SVM (96%). The results reported here showed the variation in the non-essential element profiles in rice grain depending on the geographical origin.
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