The extreme 2010–2011 wet season resulted in highly elevated Burdekin River discharge into the Great Barrier Reef lagoon for a period of 200days, resulting in a large flood plume extending >50km offshore and >100km north during peak conditions. Export of suspended sediment was dominated by clay and fine silt fractions and most sediment initially settled within ∼10km of the river mouth. Biologically-mediated flocculation of these particles enhanced deposition in the initial low salinity zone. Fine silt and clay particles and nutrients remaining in suspension, were carried as far as 100km northward from the mouth, binding with planktonic and transparent exopolymer particulate matter to form large floc aggregates (muddy marine snow). These aggregates, due to their sticky nature, likely pose a risk to benthic organisms e.g. coral and seagrass through smothering, and also by contributing to increased turbidity during wind-induced resuspension events.

Bivalve larvae and hydrographic parameters were sampled over a range of spatio-temporal scales in a deep atoll lagoon. Bivalve larvae abundances were very high throughout the year: 18,550m⁻³ in average. Larvae were (i) concentrated at mid-depth with nocturnal ascent and diurnal descent, (ii) heterogeneously dispersed at the lagoon scale, (iii) subject to day-to-day variation in abundance and (iv) transferred between different parts of the lagoon providing evidence of intra-lagoonal connectivity. The primacy of physical factors was seen on large spatial scale with the diluting effect of water renewal and transfers by hydrodynamics. On smaller spatial scale, the primacy of biological processes was recognised, with larval swimming activity leading to dial vertical migration correlated with food concentration. Variations in larval abundance were driven by bivalve reproductive activity correlated with meteorological conditions (i.e. windy periods). Finally, relationship between bivalve larvae patterns and pearl oyster (Pinctada margaritifera) settlement structuring is discussed.

Marine waters from six sites around Hong Kong with varying levels of sewage pollution were examined for noroviruses (NoVs) by PCR cloning and sequencing of a highly-variable N-terminal region of the VP1 capsid gene, at the ORF1-ORF2 junction of NoV. Phylogenetic analysis of genogroups GI- and GII-specific PCR clones obtained from different marine sites indicated that human NoV GI.1 and GII.4 strains are the most prevalent genotypes circulating in Hong Kong waters. GI- and GII-specific TaqMan-based real-time PCR assays targeting the ORF1-ORF2 junction of NoVs were used to quantify NoV particles in marine water samples in parallel with total Escherichia coli counts which were enumerated on TBX medium. No correlation of any significance between NoV and E. coli counts was observed which highlighted the inadequacy in using E. coli as a fecal indicator to predict the level of NoVs in marine waters to protect public health.

In this contribution, the potential use of diffusive gradients in thin-films (DGTs) for the chemical evaluation of transitional water bodies within the Water Framework Directive (WFD) has been studied. The water metal concentration has been evaluated in 13 estuaries in the southeastern Bay of Biscay. The DGTs were deployed in triplicate at two stations in each estuary, delimiting the tidal influence. The DGT results were in the ranges of 2–1570ngL⁻¹ for cadmium, 66–515ngL⁻¹ for copper, 30–3650ngL⁻¹ for nickel and 0.8–95.5μgL⁻¹ for zinc. The DGTs provided reliable average labile metal concentrations in highly dynamic systems that were comparable with DGT measurements in coastal and estuarine waters worldwide. In addition, it was possible to discriminate those estuaries more susceptible to environmental impacts, being consistent with the historical contamination of each estuary. Based on the obtained results, a sampling strategy for the monitoring of transitional water bodies using DGTs is proposed.

The clams Ruditapes philippinarum were used to assess the impact of metal contaminants when transplanted to seven study sites along the Maluan Bay (China). Metal concentrations in digestive gland tissues of clams after 7-day in situ cage exposure were determined in conjunction with antioxidant enzyme activities. The results showed the importance of specific antioxidant biomarkers to assess complex pollutant mixtures and their good correlations to the pollutant compositions of deployment sites. Multivariate analysis indicated causal relationship between the chemicals at each study site and the biochemical “response” of the caged clams at these sites and demonstrated the potential presence of two different contaminant sources. This study suggested that the incorporation of tissue residue analysis with biomarkers response in caged clams together with factor analysis can be a useful biomonitoring tool for the identification of causal toxic pollutants and the assessment of complex metal pollutions in marine coastal environment.

Based on spatial interpolation data from 2003 to 2010, combined with almost 30years of nitrogen and phosphorus pollutant data, this research analyzed the variations in total nitrogen (TN), nitrate nitrogen (NO₃-N), total phosphorus (TP) and phosphate-P (PO₄-P) in the Yangtze River Estuary (YRE). On the annual and seasonal timescales, nitrogen and phosphorus concentrations exhibited increasing trends overall, and the fluctuations in the concentrations of TN, TP and PO₄-P significantly increased during the last three decades, especially after 2003, because of the more prevalent human activities and nonpoint sources in the area. Specifically, a high-concentration area of TN was found downstream of the North Branch of the YRE. Considering the spatial distribution of the nutrients, combined with a tidal flood current and a time span of 7years, the TN maximum increased from approximately 3.07mg/L to 4.48mg/L. The TP maximum also rose from approximately 0.25mg/L to 0.34mg/L because of a high-concentration area of TP in the South Branch of the YRE due to the confluence with the Huangpu River. Additionally, there was an expansion of high-concentration areas of TN (⩾3.0mg/L) and of TP (⩾0.20mg/L).

At-sea detection of marine debris presents a difficult problem, as the debris items are often relatively small and partially submerged. However, they may accumulate in water parcel boundaries or eddy lines. The application of models, satellite radar and multispectral data, and airborne remote sensing (particularly radar) to focus the search on eddies and convergence zones in the open ocean appear to be a productive avenue of investigation. A multistage modeling and remote sensing approach is proposed for the identification of areas of the open ocean where debris items are more likely to congregate. A path forward may best be achieved through the refinement of the Ghost Net procedures with the addition of a final search stage using airborne radar from an UAS simulator aircraft to detect zones of potential accumulation for direct search. Sampling strategies, direct versus indirect measurements, remote sensing resolution, sensor/platform considerations, and future state are addressed.

Fish accumulate several trace elements in muscle, gills and liver, however studies also indicate that metals can be excreted through bile. Since metal contamination leads to modifications in bile composition, biliary excretion offers an alternative way to evaluate the presence of trace-elements. Bile is easier to obtain than other organs and presents a simpler matrix, making it easier for chemical pre-treatment. To verify if bile can be useful as a biomonitoring tool for metal contamination, liver and bile trace element concentrations were determined and correlated. The Artificial Neural Networks statistical technique was used to verify if liver trace-element quantification could be substituted by bile analysis. Results show that significant correlations were obtained between trace elements in bile and liver and the ANN validated the hypothesis that certain trace-elements in bile could be utilized instead of liver trace-elements. Further studies in this field are of interest to further validate this biomarker.

The spatial distribution of polychaeta along pollution gradients often reflects different degrees of disturbance. In order to evaluate polychaeta fauna of an organically polluted tropical bay, 20 sandy beaches distributed in five areas were sampled. The relationship between community structure, slope, beach index, exposure, sediment and water quality parameters were analysed. Multivariate analysis of variance (PERMANOVA) showed differences among areas and beaches. Scolelepis chilensis dominated at mouth of bay beaches whereas Streblospio gynobranchiata and Capitella capitata complex, at inner beaches. Highest polychaete density was recorded at areas 3 and 5 with the dominance of Saccocirrus sp. and the organic indicator species C. capitata complex and Polydora sp. The most important factors obtained from canonical analysis were sorting, slope, mud and organic matter percentage. Marine biotic index (AMBI) showed that areas 3 and 5 were highly affected by anthropogenic factors, given that a poor polychaeta fauna, dominated by opportunistic species, were found. Polychaete assemblages were affected by eutrophication along an estuarine gradient as well as by morphodynamic condition of the beaches.

Introducing invasive species in new environments through ballast water is a specific problem of contamination and has recently become one of the main concerns of Maritime Organizations. Ultraviolet-C radiation (UV-C) is a technological alternative to prevent this maritime pollution. This study addresses the effect of UV-C on different phytoplankton cultures and also the ability to recover following exposure to damage. A UV-C low-pressure lamp irradiates the cultures. The distance from the source and the thickness of the layer prevent part of the energy from reaching the culture and the disinfective process is diminished. Some cultures such as Chlorella autotrophica and Chaetoceros calcitrans can easily recover from UV-C damage. However, Phaeocystis globosa does not have this ability. C. calcitrans forms cysts and exhibits two different behaviours depending on the dose applied.