Molecular analysis was applied to characterize bacterial community structure in sediment samples collected from pristine site and oil-polluted Black Sea harbor. Amplified Ribosomal DNA Restriction Analysis (ARDRA) revealed a high similarity in the restriction patterns of both samples thus not demonstrating the effect of the pollutant on the structure of the bacterial communities. Constructed 16S rRNA gene libraries gave more detailed assessment of members. Results showed that α- and γ-Proteobacteria were dominant in the oil polluted site, whereas the pristine site was characterized by prevalence of Actinobacteria. The biodegradative potential of the adapted bacterial community in the oil-polluted sediments was demonstrated by the presence of the aromatic ring hydroxylating dioxygenase genes.

A laboratory study was performed to investigate the composition of products formed from OH–initiated oxidation of aromatic hydrocarbon 1,3,5–trimethylbenzene. The experiments were conducted by irradiating 1,3,5–trimethylbenzene/CH3ONO/NO/air mixtures in smog chamber. The chemical composition of gas and particle–phase products have been investigated with gas chromatography/mass spectrometry (GC/MS) and the aerosol laser time–of–flight mass spectrometer (ALTOFMS), respectively. Experimental results showed that 3,5–dimethyl benzaldehyde, 2,4,6–trimethylphenol, 2–methyl–4–oxo–2–pentenal and 3,5–dimethyl–2–furanone were the predominant products in both the gas and particle–phases. However, there were some differences between detected gas–phase products and those of particle–phase, for example, oxalic acid, 2–methyl–2–hydroxy–3,4–dioxo–pentanal, and 2,3,5–trimethyl–3–nitro–phenol were only existing in the particle–phase. The possible reaction mechanisms leading to these products are also proposed. Compared to offline methods such as GC–MS measurement, the ALTOFMS detection can analyze real–time the secondary organic aerosol (SOA) successfully and provide more information on the products. Thus, ALTOFMS is a useful tool to reveal the formation and transformation processes of SOA particles in smog chambers.

PAH concentrations of 61 surface soil samples collected from the Yellow River Delta (YRD), China were measured to determine occurrence levels, sources, and potential toxicological significance of PAHs. The total concentrations of ∑PAHs ranged from 27 to 753ng/g d.w., with a mean of 118±132ng/g. The highest concentrations was found in the mid-southern part of the YRD (753ng/g), which was associated with the oil exploration. The ratios indicated that the PAHs throughout the YRD were mostly of pyrogenic origin; while various sites in mid-southern part in the region were derived mainly from the petrogenic sources. Multivariate statistical analyses supported that the PAHs in surface soils of the YRD were principally from the coal and biomass combustion, petroleum spills, and/or vehicular emissions. The toxic assessment suggested that the PAHs in soils were at low potential of ecotoxicological contamination level for the YRD.

Carbon and nitrogen stable isotopes in albatrosses and petrels collected off southern Brazil were compared with concentrations of organochlorine contaminants (OCs). δ13C and δ15N values, as well as OCs concentrations, exhibited a high degree of variability among individuals and overlap among species. δ13C values reflected latitudinal differences among species, with lower values found in Wandering and Tristan Albatrosses and higher values found in Black-browed and Atlantic Yellow-nosed Albatrosses and White-chinned Petrels. Some relationships were found between OCs and stable isotopes, but in general a partial ‘uncoupling’ was observed between OCs concentrations and stable isotopes ratios (especially for δ15N). δ13C and δ15N values in Procellariiformes tissues during the non-breeding season appear to be a better indicator of foraging habitats than of trophic relationships, which may partially explain the high degree of variability between concentrations of OCs and stable isotopes ratios in birds with a diversified diet and wide foraging range.

After the first report of Undaria pinnatifida in north Portugal (between 1999 and 2007), a rapid spread of this species could be expected due to the presence of a stable population and the favourable environmental conditions proposed by distribution models. However, field surveys showed that U. pinnatifida was not present in most of the rocky shores in north Portugal. It seems that U. pinnatifida cannot outcompete native species outside of marinas in north Portugal. The only population in natural rocky shores was found in Buarcos, where this species was frequent. This study provides density data of U. pinnatifida that will be useful in the future to monitor changes on its abundance and distribution in the centre and south of Portugal.

Six sites (two sites for each of rocky shores, sandy beaches, and fishing ports) in northern Taiwan were selected to investigate the amount and density of marine debris in each of the four seasons and after spring and neap tides from 2012 to 2013. The results indicate that marine debris was higher on rocky shores than sandy beaches and fishing ports. There is no significant difference between season and tide. The dominant debris was plastic-type, followed by polystyrene. The majority of debris originated from recreational activities, followed from ocean/waterway activities. The results suggest that the following actions are needed: (1) continue and reinforce the plastic-limit policy; (2) increase the cleaning frequency at rocky shores; (3) promote marine environmental education, with a goal of debris-free coasts; (4) recycle fishing gear and to turn that gear into energy; and (5) coordinate between agencies to establish a mechanism to monitor debris.

Seagrasses are among the planet’s most effective natural ecosystems for sequestering (capturing and storing) carbon (C); but if degraded, they could leak stored C into the atmosphere and accelerate global warming. Quantifying and modelling the C sequestration capacity is therefore critical for successfully managing seagrass ecosystems to maintain their substantial abatement potential. At present, there is no mechanism to support carbon financing linked to seagrass. For seagrasses to be recognised by the IPCC and the voluntary C market, standard stock assessment methodologies and inventories of seagrass C stocks are required. Developing accurate C budgets for seagrass meadows is indeed complex; we discuss these complexities, and, in addition, we review techniques and methodologies that will aid development of C budgets. We also consider a simple process-based data assimilation model for predicting how seagrasses will respond to future change, accompanied by a practical list of research priorities.

A considerable amount of research has been conducted on the impacts of recreational boating activities on fishes but little or no synthesis of the information has been undertaken. This review shows that motor boats impact on the biology and ecology of fishes but the effects vary according to the species and even particular size classes. Direct hits on fishes by propellers are an obvious impact but this aspect has been poorly documented. Alterations in the wave climate and water turbidity may also influence fishes and their habitats, especially submerged and emergent plant beds. Sound generated by boat motors can also influence the communication and behaviour of certain species. Pollution arising from fuel spillages, exhaust emissions and antifouling paints all have detrimental effects on fishes. Finally, the use of recreational boats as vectors of aquatic invasive organisms is very real and has created major problems to the ecology of aquatic systems.

Genome resources have advantages for understanding diverse areas such as biological patterns and functioning of organisms. Omics platforms are useful approaches for the study of organs and organisms. These approaches can be powerful screening tools for whole genome, proteome, and metabolome profiling, and can be used to understand molecular changes in response to internal and external stimuli. This methodology has been applied successfully in freshwater model fish such as the zebrafish Danio rerio and the Japanese medaka Oryzias latipes in research areas such as basic physiology, developmental biology, genetics, and environmental biology. However, information is still scarce about model fish that inhabit brackish water or seawater. To develop the self-fertilizing killifish Kryptolebias marmoratus as a potential model species with unique characteristics and research merits, we obtained genomic information about K. marmoratus. We address ways to use these data for genome-based molecular mechanistic studies. We review the current state of genome information on K. marmoratus to initiate omics approaches. We evaluate the potential applications of integrated omics platforms for future studies in environmental science, developmental biology, and biomedical research. We conclude that information about the K. marmoratus genome will provide a better understanding of the molecular functions of genes, proteins, and metabolites that are involved in the biological functions of this species. Omics platforms, particularly combined technologies that make effective use of bioinformatics, will provide powerful tools for hypothesis-driven investigations and discovery-driven discussions on diverse aspects of this species and on fish and vertebrates in general.

The circulation in the shelf seas of Maritime Canada is predominantly in the northeast–southwest direction. Despite the mean northeast–southwest flow, a number of AIS invasions have been observed to proceed in the opposite direction – from the Gulf of Maine, around Nova Scotia, and into the southern Gulf of St. Lawrence. Flow fields from a numerical circulation model are used to investigate whether these invasions could be due to drift in ocean currents. Particle tracking experiments are performed and probability density functions (PDFs) derived that describe the probability of drifting a given upstream distance in a given drift time. Analysis of these PDFs revealed that for invasions that took 20–40y to occur, propagule drift in ocean currents could be responsible for the upstream spread, while this was not the case for short timescale invasions (<10y). Rafting could be responsible for both short and long timescale invasions.