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Development of a Competent and Trouble Free DNA Isolation Protocol for Downstream Genetic Analyses in Glycine Species
2016
Muhammad Amjad Nawaz | Faheem Shehzad Baloch | Hafiz Mamoon Rehman | Bao Le | Fahima Akther | Seung Hwan Yang | Chung Gyuhwa
Extraction of deoxyribose nucleic acid (DNA) from plants is preliminary step in molecular biology. Fast and cost effective genomic DNA isolation from Glycine species for downstream application is a major bottleneck. Here we report a high throughput and trouble free method for genomic DNA extraction from leaf and seeds of Glycine species with high quality and quantity. Protocol reports the optimization by employing different concentrations of CTAB and PVP in extraction buffer. Efficiency of optimized protocol was compared with frequently used DNA extraction methods. Wide adoptability and utility of this protocol was confirmed by DNA extraction from leaves as well as seeds of G. max, G. soja, G. tomentella and G. latifolia. Extracted DNA was successfully subjected to PCR amplification of five microsatellite markers and four putative glycosyltransferase genes. DNA extraction protocol is reproducible, trouble free, rapid and can be adopted for plant molecular biology applications.
Показать больше [+] Меньше [-]Determination of Toll-Like Receptor 1 Gene Polymorphisms in Zavot, Turkish Grey, East Anatolian Red, Anatolian Black and South Anatolian Red Cattle Breeds
2016
Mehmet Ulaş Çınar | Korhan Arslan | Esma Gamze Ilgar | Bilal Akyüz
Toll-like receptors (TLRs) play an important role in non-specific immunity against different infectious agents such as bacterium or parasite. The aim of this work was to investigate the allele and genotype frequencies of three single-nucleotide polymorphisms (SNPs) in bovine TLR1 gene in native Turkish cattle breeds. DNA samples were extracted using the phenol chloroform protocol from 77 Zavot, 60 Turkish Grey, 51 East Anatolian Red, 69 Anatolian Black and 46 South Anatolian Red cattle. Target regions of the TLR1 gene were digested BsII and HpyI88III restriction enzymes. Results showed that the (A) allele frequency had higher in all native Turkish cattle breeds of the TLR1-G1409A locus. The (F) allele frequency was found to be higher compared to (E) allele in the TLR1-G1550A site. The frequencies of both (C) and (T) alleles were close to each other in the TLR1-C632T site. In conclusion genetic polymorphisms exist in Turkish native cattle populations in terms of known TLR1 variants.
Показать больше [+] Меньше [-]Wheat Productivity: Role of Farmers’ Nutritional Status
2016
Zia ud Din | Parvez Iqbal Paracha | Zahoor ul Haq | Zahoor Ahmad | Zara Khan | Muhammad Asif
This follow-up study was carried out to investigate association of wheat productivity with the nutritional status of farmers in an agricultural area of North West Pakistan. A total of 1200 small scale farmers were randomly recruited and screened for nutrition status. Total of 226 farmers were found malnourished. An equal number of well-nourished farmers were randomly selected; detailed data on wheat yield and relevant confounding factors were collected interviewing groups. Multivariate linear regression analysis was performed to identify factors in relation to wheat yield. Comparing to well-nourished, malnourished farmers were more likely to report less wheat yield. Agricultural predictors that independently and significantly explained variation in wheat production included crop rotation, sowing time, and per acre agricultural inputs. Farmers' nutritional status; and dietary patterns further increased variance in wheat yield. The study findings reaffirmed the importance of farmers' nutritional status in predicting wheat yield.
Показать больше [+] Меньше [-]Effect of Storage Time on Nutrient Composition and Quality Parameters of Corn Silage
2016
Betül Zehra Sarıçiçek | Birgül Yıldırım | Zahide Kocabaş | Emel Ozgumus Demir
This study was carried out to determine the effects of storage duration on nutrient composition and silage quality parameters. Corn was used as silage material. Corn (31.41% dry matter) was harvested at the dough stage and fermented for 90, 104, 118, 132, 146, 160, 174, 188 and 202 days in three trench silos. The samples were brought to laboratory every 14 days. This process was repeated 9 times. After the 132th day, whereas silage crude protein (CP), ether extract (EE), ash and crude fiber (CF) contents decreased, nitrogen free extract (NFE) content increased. Lactic acid concentration of corn silage increased until the 118th day but decreased between the 118th and the 160th days. On the contrary, of decrease in LA concentration, acetic acid concentration increased depending on storage time. Ammonia nitrogen and CO2 concentration of silage increased decreased with progressing time. Storage time had significant influence on Flieg scores. The lowest score was found between days the 104th-118th. In this research, it was observed that there was a change in silage nutrient contents and fermentation characteristics with increasing storage time.
Показать больше [+] Меньше [-]In Vitro Direct Organogenesis Using Mature Embryo With Cotyledons In Chickpea
2016
Ali Ammar | Mahmood Ayyaz | Ahsan Irshad | Syeda Farhana Bukhari | Ghulam Yasin | Seema Mahmood Mahmood | Shoaib Ur Rehman
The present study was conducted to find out an in vitro efficient method for multiple shoot regeneration of two local chickpea varieties. The mature embryos were excised of two chickpea varieties i.e. Bittle-98 and Dasht-2000 (with cotyledon and without cotyledon) used as explants. The explants were cultured on Murashige and Skoog (MS) medium supplemented with three concentrations of (2, 3, 4 mg/l) 6-benzylaminopurine (BAP) using explant with and without cotyledon. Further, 0.5 mg/l α-naphthaleneacetic acid (NAA) along with varied concentrations of BAP (2, 3, 4 mg/ l) was also tested using explant with cotyledon. 3 mg/l BAP alone and 3 mg/l BAP with 0.5 mg/l NAA were found the most effective cytokinin in multiple shoot induction in both tested varieties. Bittle-98 and Dasht-2000 showed 82% and 76% elongation in shoots induction with 0.2 mg/l Indole-3-acetic acid (IAA). Root formation was recorded 80% and 60% in Bittle-98 and Dasht-2000 with 1.0 mg/l Indole-3-butyric acid (IBA). Whereas, recorded root formation was 40 and 20% in Bittle-98 and Dasht-2000 with 1.0 mg/l NAA. The best response for rooting observed in Bittle-98 as its roots were thick, long and strong. Plantlets of Bittle-98 were acclimatized in solid medium for 7-14 days. The successful invitro regeneration of Bittle-98 was observed, when excised embryo with cotyledon were used as explant, made it valuable for genetic transformation.
Показать больше [+] Меньше [-]Spray Drying of High Sugar Content Foods: Improving of Product Yield and Powder Properties
2016
Mehmet Koç | Figen Kaymak-Ertekin
Spray drying is the most preferred drying method to produce powdered food in the food industry and it is also widely used to convert sugar-rich liquid foods to a powder form. During and/or after spray drying process of sugar-rich products, undesirable situation was appeared such as stickiness, high moisture affinity (hygroscopicity) and low solubility due to low molecular weight monosaccharides that found naturally in the structure. The basis of these problems was formed by low glass transition temperature of sugar-rich products. This review gives information about the difficulties in drying of sugar-rich products via spray dryer, actions need to be taken against these difficulties and drying of sugar-rich honey and fruit juices with spray drying method.
Показать больше [+] Меньше [-]A Case of Dystocia Induced by Misuse of Oxytocin in a Boerboel Bitch
2016
Khalid Talha Biobaku | Lukman Oladimeji Raji | Ganiu Jimoh Akorede | Ismail Ayoade Odetokun | Saliu Akanni Ameen
A two year old boerboel bitch with dark greenish vaginal discharge and history of over 24 hours of difficult labor was presented to the Veterinary Teaching Hospital University of Ibadan for clinical examination and treatment. The owner had wrongfully given oxytocin after observation of signs of parturition. Following careful physical and clinical examinations of the bitch by Veterinary doctors, dystocia due to obstruction of maternal birth canal by a dead fetus was diagnosed. Treatment regimen was by digital manipulation which stimulated cervical dilatation and careful delivery of dead fetus via the vagina. Thereafter, oxytocin was administered to augment the bitch’s weak uterine contraction. Four weak puppies were delivered out of which three survived following adequate treatment.
Показать больше [+] Меньше [-]The Effect of Some Aromatic Plants Wastes on The Cultivation of Pleurotus ostreatus (Jacq.) P. Kumm. (Oyster Mushroom).
2016
Kutret Gezer | Oğuzhan Kaygusuz | Betül Gamze Bayuk | Remzi Kaygusuz | Semih Akgün
In this study, the effects of some herbal wastes such as daphne (Laurus nobilis), thyme (Origanum onites) and cumin (Cuminum cyminum) on the yield of Pleurotus ostreatus were investigated. While compost formula consisted 43% wheat straw+ 43% poplar dust+ 10% wheat bran+ 4% gyps mixture was used as the control group, 20% to 40% of herbal waste was added to this formula in the experiment groups. Total number of mushroom was counted in both the experiment and the control groups. Then, the harvested mushrooms were weighed and morphological features of caps were measured and recorded. As a result of obtained data, while it was detected that compost contained 20% cumin waste had the highest number of primordium (34), the control group had the lowest number of primordium (21 items). The highest biological yield was detected as 35.8% in the group contained 20% cumin waste. The lowest biological yield was detected in the control group with 24.6%.
Показать больше [+] Меньше [-]Efficient in vitro Clonal Propagation of Muscari neglectum Guss. Ex. Ten Using Thidiazuron- α Naphthalene Acetic Acid
2016
Çiğdem Alev Özel | Fatma Ünal
Muscari neglectum Guss. Ex Ten, is an ornamental, herbaceous perennial plant species that grows in the Mediterranean countries with attractive and scented blue-colored flowers. The plant has low seed output, seed dormancy, low germination and propagation rates. This study aimed to develop a reliable microclonal propagation protocol for M. neglectum using TDZ (Thidiazuron)-NAA (α Naphthalene acetic acid) to induce bulblets, roots, and acclimatization of the regenerated bulblets. Maximum number of bulblets per explant (8.25±0.05) was noted on MS medium containing 0.0454 µM TDZ-5.37 µM NAA. The bulblets regenerated in each type of culture medium were very vigorous, and acclimatized easily following rooting on a subculture. Here we show that this protocol is a useful clonal micropropagation system for this important ornamental plant.
Показать больше [+] Меньше [-]Drought Stress Responses of Sunflower Germplasm Developed after Wide Hybridization
2016
Roumiana Dimova Vassilevska-Ivanova | Lydia Shtereva | Ira Stancheva | Maria Geneva
Response of sunflower germplasms viz. cultivated sunflower H. annuus and two breeding lines H. annuus x T. rotundifolia and H. annuus x V. encelioides developed after wide hybridization were used for identification of drought tolerant sunflower genotypes at the seedling growth stage. Three water stress levels of zero (control), -0.4, and -0.8 MPa were developed using polyethyleneglycol-6000 (PEG-6000). Physiological and biochemical stress determining parameters such as root and shoots length, fresh weight, antioxidant enzyme activities (superoxide dismutase (SOD), catalase (CAT), guaiacol peroxidase (GPO), ascorbate peroxidase (APX) and antioxidant metabolite content (total antioxidant capacity, total phenols and total flavonoids content) were compared between seedlings of all three genotypes. Results revealed that sunflower genotypes have similar responses at two osmotic potentials for shoot and root length and fresh weight. The data also showed that drought stresss could induce oxidative stress, as indicated by the increase level of ascorbate peroxidase and guaiacol peroxidase at -04 MPa in H. annuus cv 1114. Although the activity of ascorbate peroxidase and guaiacol peroxidase was differentially influenced by drought, the changes of antioxidant enzyme activities such as catalase, superoxide dismutase, guaiacol peroxidase, and ascorbate peroxidase subjected to drought stress follow a similar pattern in both breeding lines, indicating that similar defense systems might be involved in the oxidative stress injury in sunflowers. Increase in content of phenols and flavonoids were detected for all three genotypes under stress, which showed that these were major antioxidant metabolites in scavenging cellular H2O2.
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