Effects on groundwater flow of abandoned engineered structures in relation to a potential geological repository for spent high-level nuclear fuel in fractured crystalline rock at the Forsmark site, Sweden, are studied by means of numerical modeling. The effects are analyzed by means of particle tracking, and transport-related performance measures are calculated. The impacts of abandoned, partially open repository tunnels are studied for two situations with different climate conditions: a “temperate” climate case with present-day boundary conditions, and a generic future “glacial” climate case with an ice sheet covering the repository. Then, the impact of abandoned open boreholes drilled through the repository is studied for present-day climate conditions. It is found that open repository tunnels and open boreholes can act as easy pathways from repository level to the ground surface; hence, they can attract a considerable proportion of particles released in the model at deposition hole positions within the repository. The changed flow field and flow paths cause some changes in the studied performance measures, i.e., increased flux at the deposition holes and decreased transport lengths and flow-related transport resistances. However, these effects are small and the transport resistance values are still high.