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Genome scale transcriptional response diversity among ten ecotypes of Arabidopsis thaliana during heat stress Полный текст
2013
Pankaj eBarah | Naresh Doni Jayavelu | John eMundy | Atle M Bones
In the scenario of global warming and climate change, heat stress is a serious threat to crop production. Being sessile, plants cannot escape from heat and have developed various adaptive mechanisms to survive heat stress. Several studies have focused on diversity of heat tolerance levels in divergent Arabidopsis thaliana (A. thaliana) ecotypes, but comprehensive genome scale understanding of heat stress response in plants is still lacking. Here we report the genome scale transcript responses to heat stress of 10 A. thaliana ecotypes (Col, Ler, C24, Cvi, Kas1, An1, Sha, Kyo2, Eri and Kond) from different geographical locations,. A. thaliana plants were subjected to heat stress (38°C) and transcript responses were monitored using Arabidopsis NimbleGen ATH6 microarrays. The responses of Arabidopsis ecotypes exhibited considerable variation in global transcript levels. In total, 3644 transcripts were significantly heat regulated (p
Показать больше [+] Меньше [-]Progesterone moderates damage in Arabidopsis thaliana caused by infection with Pseudomonas syringae or P. fluorescens Полный текст
2013
A. Janeczko | I. Tóbiás | A. Skoczowski | F. Dubert | G. Gullner | B. Barna
Progesterone moderates damage in Arabidopsis thaliana caused by infection with Pseudomonas syringae or P. fluorescens Полный текст
2013
A. Janeczko | I. Tóbiás | A. Skoczowski | F. Dubert | G. Gullner | B. Barna
Brassinosteroids are known to protect plants against various abiotic and biotic stresses, however, very limited information is available about the role of progesterone. Therefore the effects of Pseudomonas syringae pv. syringae (P.s.) wild type strain 61, its hrcC mutant, and the saprophytic P. fluorescens (P.f.) strain 55 were investigated in wild type Arabidopsis thaliana cv. Columbia and its rbohF knock-out mutant, with and without progesterone pre-treatment. The reactions of wild type and rbohF mutant Arabidopsis to bacterial inoculations were similar, although 2 h after injection of P.s. a larger increase of electrolyte leakage was measured in wild type than in rbohF knockout mutant leaves. The hrcC mutant caused weak necrotic symptoms and increased leakage in both types of Arabidopsis, although to a much lesser extent than P.s. The P.f. did not induce any visible symptom, but slightly increased the electrolyte leakage in both types of Arabidopsis. Inoculation by all Pseudomonas bacteria led to significant alterations in photosystem 2 efficiency as compared to control plants. Pre-treatment of leaves with progesterone diminished the necrotic symptoms, the electrolyte leakage and improve the efficiency of photosystem 2 caused by Pseudomonas bacteria.
Показать больше [+] Меньше [-]Progesterone moderates damage in Arabidopsis thaliana caused by infection with Pseudomonas syringae or P. fluorescens Полный текст
2013
Janeczko, A. | Tóbiás, I. | Skoczowski, A. | Dubert, F. | Gullner, G. | Barna, B.
Brassinosteroids are known to protect plants against various abiotic and biotic stresses, however, very limited information is available about the role of progesterone. Therefore the effects of Pseudomonas syringae pv. syringae (P.s.) wild type strain 61, its hrcC mutant, and the saprophytic P. fluorescens (P.f.) strain 55 were investigated in wild type Arabidopsis thaliana cv. Columbia and its rbohF knock-out mutant, with and without progesterone pre-treatment. The reactions of wild type and rbohF mutant Arabidopsis to bacterial inoculations were similar, although 2 h after injection of P.s. a larger increase of electrolyte leakage was measured in wild type than in rbohF knockout mutant leaves. The hrcC mutant caused weak necrotic symptoms and increased leakage in both types of Arabidopsis, although to a much lesser extent than P.s. The P.f. did not induce any visible symptom, but slightly increased the electrolyte leakage in both types of Arabidopsis. Inoculation by all Pseudomonas bacteria led to significant alterations in photosystem 2 efficiency as compared to control plants. Pre-treatment of leaves with progesterone diminished the necrotic symptoms, the electrolyte leakage and improve the efficiency of photosystem 2 caused by Pseudomonas bacteria.
Показать больше [+] Меньше [-]Diurnal changes in shoot water dynamics are synchronized with hypocotyl elongation in Arabidopsis thaliana Полный текст
2013
Ishikawa, H. | Sato-Nara, K. | Takase, T. | Suzuki, H.
We recently demonstrated the circadian clock modulated water dynamics in the roots of a small model plant, Arabidopsis thaliana, by the Nuclear Magnetic Resonance (NMR) microimaging technique. Our developed technique was able to visualize the water distribution that depended on differences in the 1H signal among region in the shoot, such as the shoot apex, the hypocotyl and the root shoot junction. Water content in the shoot increased during periods of light in comparison with dark periods, and continued through the early stage of seedling growth until the dark period. When the water content changed, elongation and/or movement occurred in the hypocotyl, and these events were synchronized. The water dynamics of the shoot also displayed an opposite phase with the root water dynamics.
Показать больше [+] Меньше [-]Overexpression of AtALMT1 in the Arabidopsis thaliana ecotype Columbia results in enhanced Al-activated malate excretion and beneficial bacterium recruitment Полный текст
2013
Kobayashi, Yasufumi | Lakshmanan, Venkatachalam | Kobayashi, Yuriko | Asai, Minatsu | Iuchi, Satoshi | Kobayashi, Masatomo | Bais, Harsh P. | Koyama, Hiroyuki
AtALMT1 (Arabidopsis thaliana ALuminum activated Malate Transporter 1) encodes an Arabidopsis thaliana malate transporter that has a pleiotropic role in Arabidopsis stress tolerance. Malate released through AtALMT1 protects the root tip from Al rhizotoxicity, and recruits beneficial rhizobacteria that induce plant immunity. To examine whether the overexpression of AtALMT1 can improve these traits, the gene, driven by the cauliflower mosaic virus 35S promoter, was introduced into the Arabidopsis ecotype Columbia. Overexpression of the gene enhanced both Al-activated malate excretion and the recruitment of beneficial bacteria Bacillus subtilis strain FB17. These findings suggest that overexpression of AtALMT1 can be used as an approach to enhance a plant's ability to release malate into the rhizosphere, which can enhance plant tolerance to some environmental stress factors.
Показать больше [+] Меньше [-]GTP Binding Assays in Arabidopsis thaliana Полный текст
2013
Ana Fox | Maria Mazzella
Signaling through G proteins constitutes an ancient mechanism that functions in the transduction of extracellular signals into intracellular responses. Activation of a proper receptor by a stimuli leads to an exchange of GDP for GTP, the activation of G proteins and the dissociation of Gα-GTP from the Gβγ dimer for the heterotrimeric G proteins. The G protein subunits remain active until the intrinsic GTPase activity or/and a GTPase activating protein result in the hydrolysis of GTP to GDP and the inactivation of the protein. Here we describe a protocol for measuring GTP binding activity from Arabidopsis plant protein extracts using GTP γ35S. GTP γ35S assay measures the level of G protein activation following a stimuli, by determining the binding activity of the non-hydrolysable analog GTP γ35S. To determine specific G protein activities specific mutants and/or overexpressors extracts should be included and measured as controls.
Показать больше [+] Меньше [-]Identifying meiotic mutants in Arabidopsis thaliana Полный текст
2013
Crismani, Wayne | Mercier, Raphaël | Institut Jean-Pierre Bourgin (IJPB) ; Institut National de la Recherche Agronomique (INRA)-AgroParisTech | Absent | Pawlowski, Wojciech P | Grelon, Mathilde | Armstrong, Susan
Arabidopsis is a very powerful tool for understanding meiosis in plants with genetic approaches. We provide here a simple summary of the techniques used to test if a candidate gene has an essential meiotic function. These protocols require no specific prior knowledge and help eliminate easily avoided mistakes in the attribution of a meiotic function to your favorite gene.
Показать больше [+] Меньше [-]3D gel map of Arabidopsis complex I Полный текст
2013
Katrin ePeters | Katharina eBelt | Hans-Peter eBraun
Complex I has a unique structure in plants and includes extra subunits. Here, we present a novel study to define its protein constituents. Mitochondria were isolated from Arabidopsis thaliana cell cultures, leaves and roots. Subunits of complex I were resolved by 3D blue native (BN)/SDS/SDS-PAGE and identified by mass spectrometry. Overall, 55 distinct proteins were found, 7 of which occur in pairs of isoforms. We present evidence that Arabidopsis complex I consists of 49 distinct types of subunits, 40 of which represent homologues of bovine complex I. The 9 other subunits represent special proteins absent in the animal linage of eukaryotes, most prominently a group of subunits related to bacterial gamma-type carbonic anhydrases. A GelMap (http://www.gelmap.de/arabidopsis-3d-complex-i/) is presented for promoting future complex I research in Arabidosis thaliana.
Показать больше [+] Меньше [-]Overexpression of the AtSTK gene increases salt, PEG and ABA tolerance in Arabidopsis
2013
Bing, L., Hebei Normal University, Shijiazhuang, China | Feng, C.C., Hebei Normal University, Shijiazhuang, China | li, J.L., Hebei Normal University, Shijiazhuang, China | Li, X.X., Hebei Normal University, Shijiazhuang, China | Zhao, B.C., Hebei Normal University, Shijiazhuang, China | Shen, Y.Z., Hebei Normal University, Shijiazhuang, China | Huang, Z.H., Hebei Normal University, Shijiazhuang, China | Ge, R.C., Hebei Normal University, Shijiazhuang, China
AtSTK (At5g02800), which is a serine-threonine protein kinase gene of Arabidopsis thaliana, was cloned, and its function was studied. The study found that the overexpression of AtSTK could significantly improve the ability of A. thaliana to tolerate salt, PEG, and ABA stresses. RT-PCR analysis revealed that the expression of the AtSTK gene could be obviously induced by salt, PEG, and ABA. The examination of the physiological characteristics showed that the overexpression of AtSTK in Arabidopsis significantly reduced the plasma membrane permeability, significantly increased the proline content, and decreased the MDA content. These changes may reflect the physiological mechanisms through which AtSTK overexpression improves stress resistance in Arabidopsis. In addition, the overexpression of the AtSTK gene significantly antagonised the inhibitory effect of high concentrations of exogenous ABA on Arabidopsis seed germination. The subcellular localisation results showed that AtSTK is located in both the cytosol and the nucleus. The examination of its tissue-specific expression showed that AtSTK is expressed in various Arabidopsis tissues and is particularly strongly expressed in the vessels. The signalling pathway analysis indicated that AtSTK might transfer the salt stress signal in Arabidopsis through the MAPK pathway.
Показать больше [+] Меньше [-]New checkpoints in stomatal defense Полный текст
2013
Montillet, Jean-Luc | Hirt, Heribert
New checkpoints in stomatal defense Полный текст
2013
Montillet, Jean-Luc | Hirt, Heribert
Recent reports have revealed new guard cell signaling elements that function in stomatal defense in Arabidopsis thaliana (Arabidopsis). We discuss here the role of oxylipins, salicylic acid (SA), and abscisic acid (ABA) in stomatal immunity in response to the bacterial pathogen Pseudomonas syringae.
Показать больше [+] Меньше [-]New checkpoints in stomatal defense Полный текст
2013
Montillet, Jean-Luc | Hirt, Heribert | Commissariat à l'énergie atomique et aux énergies alternatives (CEA) | Institut de Biosciences et Biotechnologies d'Aix-Marseille (ex-IBEB) (BIAM) ; Aix Marseille Université (AMU)-Centre National de la Recherche Scientifique (CNRS)-Direction de Recherche Fondamentale (CEA) (DRF (CEA)) ; Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA) | Aix Marseille Université (AMU) | Unité de recherche en génomique végétale (URGV) ; Institut National de la Recherche Agronomique (INRA)-Université d'Évry-Val-d'Essonne (UEVE)-Centre National de la Recherche Scientifique (CNRS) | Centre National de la Recherche Scientifique (CNRS)
International audience | Recent reports have revealed new guard cell signaling elements that function in stomatal defense in <em>Arabidopsis thaliana</em> (<em>Arabidopsis</em>). We discuss here the role of oxylipins, salicylic acid (SA), and abscisic acid (ABA) in stomatal immunity in response to the bacterial pathogen <em>Pseudomonas syringae</em>.
Показать больше [+] Меньше [-]Identification of promoter regions in the Arabidopsis thaliana atExt1 extensin gene controlling late responses to wounding and pathogen attack Полный текст
2013
K. Roberts | G. Merkouropoulos | A. H. Shirsat
Identification of promoter regions in the Arabidopsis thaliana atExt1 extensin gene controlling late responses to wounding and pathogen attack Полный текст
2013
K. Roberts | G. Merkouropoulos | A. H. Shirsat
The Arabidopsis thaliana (L.) Heynh. atExt1 extensin gene is expressed in a cell and tissue-specific manner, in response to developmental cues, and is inducible by a wide range of biotic and abiotic stresses. Over-expression of this gene has been shown to alter stem morphology and to limit the invasiveness of virulent bacterial pathogens, indicating that this cell wall protein gene plays an important role in plant development and defense. A detailed sequence analysis of 3.2 kb of the atExt1 gene promoter region has identified a large number of putative 5'cis-acting elements. Based on the location of clusters of putative promoter control elements, seven atExt1 5' promoter truncations were constructed, fused upstream of the β-glucuronidase (GUS) reporter gene, and transformed into A. thaliana. Transgenic plants carrying the various promoter constructs were challenged by wounding and pathogen attack and analysed for GUS expression - this analysis revealed a complex pattern of regulation, involving positive and negative control regions. Northern analysis using wounded tissues from transgenic Arabidopsis plants carrying the 3.2 kb-promoter::GUS construct confirmed the transcriptional activation of the transgene.
Показать больше [+] Меньше [-]Identification of promoter regions in the Arabidopsis thaliana atExt1 extensin gene controlling late responses to wounding and pathogen attack Полный текст
2013
Roberts, K. | Merkouropoulos, G. | Shirsat, A. H.
The Arabidopsis thaliana (L.) Heynh. atExt1 extensin gene is expressed in a cell and tissue-specific manner, in response to developmental cues, and is inducible by a wide range of biotic and abiotic stresses. Over-expression of this gene has been shown to alter stem morphology and to limit the invasiveness of virulent bacterial pathogens, indicating that this cell wall protein gene plays an important role in plant development and defense. A detailed sequence analysis of 3.2 kb of the atExt1 gene promoter region has identified a large number of putative 5′cis-acting elements. Based on the location of clusters of putative promoter control elements, seven atExt1 5′ promoter truncations were constructed, fused upstream of the β-glucuronidase (GUS) reporter gene, and transformed into A. thaliana. Transgenic plants carrying the various promoter constructs were challenged by wounding and pathogen attack and analysed for GUS expression - this analysis revealed a complex pattern of regulation, involving positive and negative control regions. Northern analysis using wounded tissues from transgenic Arabidopsis plants carrying the 3.2 kb-promoter::GUS construct confirmed the transcriptional activation of the transgene.
Показать больше [+] Меньше [-]Identification of promoter regions in the Arabidopsis thaliana atExt1 extensin gene controlling late responses to wounding and pathogen attack Полный текст
2013
Roberts, K., Bangor University (United Kingdom). School of Biological Sciences | Merkouropoulos, G., CERTH, Thessaloniki (Greece). Institute of Agrobiotechnology | Shirsat, A.H., Bangor University (United Kingdom). School of Biological Sciences
The Arabidopsis thaliana atExt1 extensin gene is expressed in a cell and tissue-specific manner, in response to developmental cues, and is inducible by a wide range of biotic and abiotic stresses. Over-expression of this gene has been shown to alter stem morphology and to limit the invasiveness of virulent bacterial pathogens, indicating that this cell wall protein gene plays an important role in plant development and defense. A detailed sequence analysis of 3.2 kb of the atExt1 gene promoter region has identified a large number of putative 5 cis-acting elements. Based on the location of clusters of putative promoter control elements, seven atExt1 5 promoter truncations were constructed, fused upstream of the beta-glucuronidase (GUS) reporter gene, and transformed into A. thaliana. Transgenic plants carrying the various promoter constructs were challenged by wounding and pathogen attack and analysed for GUS expression - this analysis revealed a complex pattern of regulation, involving positive and negative control regions. Northern analysis using wounded tissues from transgenic Arabidopsis plants carrying the 3.2 kb-promoter:GUS construct confirmed the transcriptional activation of the transgene.
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