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The expansion of mesophyll cells is coordinated with the division of chloroplasts in diploid and tetraploid Arabidopsis thaliana Полный текст
2021
He, Hanjun | Xie, Wei | Liang, Zhixin | Wu, Hong | Bai, Mei
MAIN CONCLUSION: Cell expression is coordinated with chloroplast division in diploid and tetraploid Arabidopsis thaliana, polyploidy promoted the expansion of mesophyll cells and chloroplast division in A. thaliana. Cell development and differentiation are always accompanied by cell expansion and chloroplast division in plants, but the relationship between them is still relatively unknown. To confirm the relationship between cell expansion and chloroplast division during the leaf development process of diploid and tetraploid Arabidopsis thaliana, we systematically analyzed the expansion of mesophyll cells and the division of chloroplasts through cytological observation and gene-expression characteristics. As a result, in diploid and tetraploid A. thaliana, there were two peaks in both mesophyll cell expansion and chloroplast division during the leaf development process. Tetraploid A. thaliana mesophyll cells were larger and contained more chloroplasts than diploid A. thaliana mesophyll cells, which indicated that cell division and cell expansion were coordinated with chloroplast division in A. thaliana and that polyploidy further promoted mesophyll cell expansion and chloroplast division.
Показать больше [+] Меньше [-]Rapid mapping of the IAA in leaves of Arabidopsis thaliana using a simple paper-based electroanalytical device coupled with microsampling Полный текст
2021
Sun, Ling | Yang, Zhengfei | Li, Hao | Lan, Xiran | Tang, Yishun | Liu, Wu | Zhu, Xinyu | Bao, Ning | Sun, Lijun
To deeply investigate the pivotal roles of Auxin (mainly indole-3-acetic acid, IAA), it is essential to obtain the contents of IAA in different locations of plants. It is still a challenge to quantify the levels of IAA in different sites of Arabidopsis thaliana leaves because of the small sizes. In this study, a simple paper-based electroanalytical device coupled with microsampling was used to differentiate the IAA amounts in different locations of Arabidopsis thaliana leaves. For the micro real sampling, the different areas of the thaliana leaves were retrieved by the Harris Uni-Core TM Miltex® with diameters: 1.0, 1.5, 2.5, 3.5, and 4.0 mm. The results showed that the contents of IAA can be detected from circle samples with the diameter from 1.0 to 4.0 mm. With 1.5 mm diameter sampling, the levels of IAA could be obtained in different sites of cotyledon and the first true leaf of Arabidopsis thaliana at the seedling stage. Our results suggested that the highest IAA levels were in the near petiole and lowest IAA levels in the leaf tip, which roughly agreed with those in tobacco leaves based on HPLC-MS reported before. In addition, the microsampling has a minor impact on the growth of Arabidopsis thaliana in the following especially for circle samples with the diameter 1.5 mm. This study revealed the potential application of microsampling coupled with a simple paper-based electroanalytical device for the mapping study of IAA in small plants or small tissue samples.
Показать больше [+] Меньше [-]A ClearSee-Based Clearing Protocol for 3D Visualization of Arabidopsis thaliana Embryos Полный текст
2021
Imoto, Ayame | Yamada, Mizuki | Sakamoto, Takumi | Okuyama, Airi | Ishida, Takashi | Sawa, Shinichiro | Aida, Mitsuhiro
A ClearSee-Based Clearing Protocol for 3D Visualization of Arabidopsis thaliana Embryos Полный текст
2021
Imoto, Ayame | Yamada, Mizuki | Sakamoto, Takumi | Okuyama, Airi | Ishida, Takashi | Sawa, Shinichiro | Aida, Mitsuhiro
Tissue clearing methods combined with confocal microscopy have been widely used for studying developmental biology. In plants, ClearSee is a reliable clearing method that is applicable to a wide range of tissues and is suitable for gene expression analysis using fluorescent reporters, but its application to the Arabidopsis thaliana embryo, a model system to study morphogenesis and pattern formation, has not been described in the original literature. Here, we describe a ClearSee-based clearing protocol which is suitable for obtaining 3D images of Arabidopsis thaliana embryos. The method consists of embryo dissection, fixation, washing, clearing, and cell wall staining and enables high-quality 3D imaging of embryo morphology and expression of fluorescent reporters with the cellular resolution. Our protocol provides a reliable method that is applicable to the analysis of morphogenesis and gene expression patterns in Arabidopsis thaliana embryos.
Показать больше [+] Меньше [-]A ClearSee-Based Clearing Protocol for 3D Visualization of <i>Arabidopsis thaliana</i> Embryos Полный текст
2021
Ayame Imoto | Mizuki Yamada | Takumi Sakamoto | Airi Okuyama | Takashi Ishida | Shinichiro Sawa | Mitsuhiro Aida
Tissue clearing methods combined with confocal microscopy have been widely used for studying developmental biology. In plants, ClearSee is a reliable clearing method that is applicable to a wide range of tissues and is suitable for gene expression analysis using fluorescent reporters, but its application to the <i>Arabidopsis thaliana</i> embryo, a model system to study morphogenesis and pattern formation, has not been described in the original literature. Here, we describe a ClearSee-based clearing protocol which is suitable for obtaining 3D images of <i>Arabidopsis thaliana</i> embryos. The method consists of embryo dissection, fixation, washing, clearing, and cell wall staining and enables high-quality 3D imaging of embryo morphology and expression of fluorescent reporters with the cellular resolution. Our protocol provides a reliable method that is applicable to the analysis of morphogenesis and gene expression patterns in <i>Arabidopsis thaliana</i> embryos.
Показать больше [+] Меньше [-]Enhanced NRT1.1/NPF6.3 expression in shoots improves growth under nitrogen deficiency stress in Arabidopsis Полный текст
2021
Yasuhito Sakuraba | Chaganzhana | Atsushi Mabuchi | Koh Iba | Shuichi Yanagisawa
Here, the authors conduct a genome-wide association study from Arabidopsis thaliana accessions and demonstrate that the polymorphisms in the promoter of NRT1.1/NPF6.3, a dual-affinity nitrate transporter, are associated with different magnitudes of N deficiency in Arabidopsis shoot.
Показать больше [+] Меньше [-]Fatty acid composition and cpDNA content in Arabidopsis thaliana mutants deprived of EGY1 protease Полный текст
2021
M. ADAMIEC | M. SZOMEK | E. GABAŁA | J. DOBROGOJSKI | L. MISZTAL | R. LUCIŃSKI
EGY1 (ethylene-dependent gravitropism-deficient and yellow-green 1) is an intramembrane metalloprotease located in chloroplasts, involved in many diverse processes including chloroplast development, chlorophyll biosynthesis, and the ethylene-dependent gravitropic response. Plants deprived of this protease display pleiotropic effects such as the yellow-green early senescence phenotype and a poorly developed thylakoid system membrane in the mature chloroplasts. We applied the GC/MS technique to analyze the changes in fatty acid composition in two egy1 mutant lines. We used DAPI staining and transmission electron microscopy methods to establish the number of nucleoids and the amount of chloroplast DNA. Our results indicated that the lack of EGY1 protease led to a dramatic overaccumulation and a dramatic decrease in the content of linolenic acid C18:3 and hexadecatrienoic acid C16:3, respectively. The amount of chloroplast DNA and the number of nucleoids were severely reduced in egy1 mutant lines. Similarly, a reduced correlation between DAPI and autofluorescence signal was observed, which may indicate some perturbations in nucleoid anchoring.
Показать больше [+] Меньше [-]Starch granule initiation in Arabidopsis thaliana chloroplasts Полный текст
2021
Mérida, Angel | Fettke, Joerg
Starch granule initiation in Arabidopsis thaliana chloroplasts Полный текст
2021
Mérida, Angel | Fettke, Joerg
The initiation of starch granule formation and the mechanism controlling the number of granules per plastid have been some of the most elusive aspects of starch metabolism. This review covers the advances made in the study of these processes. The analyses presented herein depict a scenario in which starch synthase isoform 4 (SS4) provides the elongating activity necessary for the initiation of starch granule formation. However, this protein does not act alone; other polypeptides are required for the initiation of an appropriate number of starch granules per chloroplast. The functions of this group of polypeptides include providing suitable substrates (maltooligosaccharides) to SS4, the localization of the starch initiation machinery to the thylakoid membranes, and facilitating the correct folding of SS4. The number of starch granules per chloroplast is tightly regulated and depends on the developmental stage of the leaves and their metabolic status. Plastidial phosphorylase (PHS1) and other enzymes play an essential role in this process since they are necessary for the synthesis of the substrates used by the initiation machinery. The mechanism of starch granule formation initiation in Arabidopsis seems to be generalizable to other plants and also to the synthesis of long‐term storage starch. The latter, however, shows specific features due to the presence of more isoforms, the absence of constantly recurring starch synthesis and degradation, and the metabolic characteristics of the storage sink organs.
Показать больше [+] Меньше [-]Starch granule initiation in Arabidopsis thaliana chloroplasts Полный текст
2021
Mérida, Ángel | Fettke, Joerg | Ministerio de Ciencia e Innovación (España)
The initiation of starch granule formation and the mechanism controlling the number of granules per plastid have been some of the most elusive aspects of starch metabolism. This review covers the advances made in the study of these processes. The analyses presented herein depict a scenario in which starch synthase isoform 4 (SS4) provides the elongating activity necessary for the initiation of starch granule formation. However, this protein does not act alone; other polypeptides are required for the initiation of an appropriate number of starch granules per chloroplast. The functions of this group of polypeptides include providing suitable substrates (maltooligosaccharides) to SS4, the localization of the starch initiation machinery to the thylakoid membranes, and facilitating the correct folding of SS4. The number of starch granules per chloroplast is tightly regulated and depends on the developmental stage of the leaves and their metabolic status. Plastidial phosphorylase (PHS1) and other enzymes play an essential role in this process since they are necessary for the synthesis of the substrates used by the initiation machinery. The mechanism of starch granule formation initiation in Arabidopsis seems to be generalizable to other plants and also to the synthesis of long-termstorage starch. The latter, however, shows specific features due to the presence of more isoforms, the absence of constantly recurring starch synthesis and degradation, and the metabolic characteristics of the storage sink organs. | Peer reviewed
Показать больше [+] Меньше [-]The Sterol Trafficking Pathway in Arabidopsis thaliana Полный текст
2021
Krishna Kumar | Holly C. Gibbs | Holly C. Gibbs | Alvin T. Yeh | Lawrence R. Griffing | Lawrence R. Griffing
In plants, the trafficking mechanisms by which sterols move through the plant and into target cells are unknown. Earlier studies identified endosomes as primary candidates for internalization of sterols in plants, but these results have come into question. Here, we show that in elongating root cells, the internalization of sterol occurs primarily by a non-endocytic mechanism. Added fluorescent sterols [dehydroergosterol (DHE) and BODIPY-cholesterol (BCh)] do not initially label endosomes identified by fluorescent protein markers or by internalized FM4-64. Instead, the nuclear envelope, an organelle not associated with the endocytic pathway but part of the endoplasmic reticulum (ER), becomes labeled. This result is supported by experiments with the inducible overexpression of auxilin-2-like protein (AUX2 line), which blocks most endocytosis upon induction. Internalization and nuclear envelope labeling still occur in induced AUX2 cells. Longer-term incubation labels the oil body, a site involved in sterol storage. Although the first site of localization, the nuclear envelope, is part of the ER, other domains of the ER do not accumulate the label. The trafficking pathway differs from vesicular endocytosis and points toward a different pathway of sterol transport possibly involving other mechanisms, such as ER–plasma membrane contact sites and cytoplasmic transport.
Показать больше [+] Меньше [-]A fungal member of the Arabidopsis thaliana phyllosphere antagonizes Albugo laibachii via a GH25 lysozyme Полный текст
2021
Katharina Eitzen | Priyamedha Sengupta | Samuel Kroll | Eric Kemen | Gunther Doehlemann
Plants are not only challenged by pathogenic organisms but also colonized by commensal microbes. The network of interactions these microbes establish with their host and among each other is suggested to contribute to the immune responses of plants against pathogens. In wild Arabidopsis thaliana populations, the oomycete pathogen Albugo laibachii plays an influential role in structuring the leaf phyllosphere. We show that the epiphytic yeast Moesziomyces bullatus ex Albugo on Arabidopsis, a close relative of pathogenic smut fungi, is an antagonistic member of the A. thaliana phyllosphere, which reduces infection of A. thaliana by A. laibachii. Combination of transcriptomics, reverse genetics, and protein characterization identified a GH25 hydrolase with lysozyme activity as a major effector of this microbial antagonism. Our findings broaden the understanding of microbial interactions within the phyllosphere, provide insights into the evolution of epiphytic basidiomycete yeasts, and pave the way for novel biocontrol strategies.
Показать больше [+] Меньше [-]Circadian regulation of metabolism in Arabidopsis thaliana Полный текст
2021
Cervela-Cardona, Luis | Yoshida, Takuya | Zhang, Youjun | Okada, Masaaki | Fernie, Alisdair R. | Más, Paloma
Trabajo presentado al International Symposium on Plant Photobiology (ISPP), celebrado virtualmente del 22 al 25 de julio de 2021. | Peer reviewed
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