Mercuric ions (Hg²⁺) and methylmercury are major, human-generated, toxic contaminants present in fish and our waterways. Bacteria provide a means of bioremediation by taking up these compounds and reducing them to volatile, non-toxic, elemental mercury (Hg°). Three types of mercury/methylmercury transporters have previously been identified: MerC, MerF and MerT. Each of these sets of homologues has distinct topologies. MerF proteins are characterized by a 2-transmembrane α-helical segment (TMS) topology; most MerTs have three TMSs, and MerCs have four TMSs. This report shows that MerT and MerF proteins are related by common descent and are similar in sequence throughout their first two TMSs. One of the MerF proteins is internally duplicated, generating a protein with four TMSs, while several MerT homologues bear a C-terminal extracytoplasmic Hg²⁺-binding MerP domain. MerPs are homologous to heavy metal-binding domains present in copper chaperone proteins, at the N-termini of mercuric reductases and in from one to six copies in heavy metal transporting P-type ATPases. Phylogenetic analyses reveal that mercuric ion transporters have been horizontally transferred with high frequency between bacteria. Some MerTs function with MerP receptors while others do not, and the MerP-dependent MerTs cluster separately from the MerP-independent MerTs on a phylogenetic tree. MerTs possessing a MerP appear to have co-evolved with their cognate receptors. Conserved sequence and motif analyses serve to define the mercuric transporter family fingerprints and allow prediction of specific subfunctions. This report provides the first detailed bioinformatic description of two apparently unrelated families of Hg²⁺ uptake transporters. We propose that all members of these two families function by a simple channel-type mechanism to allow influx of Hg²⁺ in response to the membrane potential in preparation for reduction and detoxification. This information should facilitate the exploitation of these transporters for purposes of microbial and phytobioremediation.

The importance of the chemical composition in evaluating groundwater flow is discussed. Two different geological environments, a felsic volcanic region around San Luis Potosí (SLPB), Mexico, and a sedimentary basin, part of the Pannonian Basin (PB), in Hungary, were chosen to explore the effect of local, intermediate and regional groundwater flows on the chemical evolution of water in different geological circumstances. In the study areas contrasting stable isotopes and groundwater temperature values, as well as the chemical composition of groundwater were convenient tools to propose groundwater flow direction and to study contamination processes in the different groundwater flow systems. Results indicate that regardless of the geological framework variability of the chemical composition of the shallow (<100 m) groundwater is significant; at depth the chemical content of groundwater becomes homogeneous, and the concentrations are smaller than at shallow depths. The Cl- and NO- ₃ concentrations indicate mainly up- and downward vertical flow directions suggesting local flow systems in the shallow layers. The linear regression between Cl- and Na⁺ suggests that evaporation processes are the main control of the Cl- concentration. Deviations from the regression line suggest processes such as pollution at shallow depths in both study areas. Based on the distribution of Ca⁺², Mg⁺² and Na⁺, a lateral flow can be traced. The large dimensions of the geological units involved with the regional flow systems implies a long groundwater flow path, also these flows remain isolated from anthropogenic contamination, then groundwater has not been altered by human influence, although in the SLPB a communication between the local and intermediate flows has been found. Recharge areas of the local and intermediate flow systems are more vulnerable to contamination processes than the discharge areas, where the expected low dissolved oxygen content of ascending water could play a control. Differences in the lithology between the PB (sedimentary basin) and the SLPB (felsic volcanic basin) explain the contrasting saturation indices calculated for chalcedony and calcite and the lack of the expected development of HCO- ₃, SO-² ₄ Cl- facies and contrasting aerobic/oxidizing conditions.

The roles of ectomycorrhizal fungi and bacteria associated with corresponding fungal species in distribution of heavy metals within roots and shoots of inoculated pine (Pinus sylvestris L.) seedlings were determined in this study. The mycorrhizal fungi forming different morphotypes were identified by PCR-RFLP using respective primers for an internal spacer transcribed region (ITS) of fungal rDNA. Amongst five fungal species detected, three were identified as Scleroderma citrinum, Amanita muscaria and Lactarius rufus. These fungi used for inoculation of pine seedlings significantly reduced translocation of Zn(II), Cd(II) or Pb(II) from roots to shoots, and the pattern of metal-accumulation was dependent on the fungal species. Ectomycorrhizae-associated bacteria identified as Pseudomonas were used as an additional component of the pine inoculation. These dual root inoculations resulted in higher accumulation of the metals, especially Zn(II), in the roots compared to the inoculation with fungal species alone. Consequently, dual inoculation of pine seedlings could be a suitable approach for plant protection against heavy metals and successful planting of metal-polluted soils.

It is now irrefutable that air pollution caused by large amounts of Total Suspended Particulates (TSP) and respiratory particulates or Particulate Matter less than 10 μm in aerodynamic diameter (PM₁₀) has numerous undesired consequences on human health. Air quality degradation far from the African continent, in the US and in Europe, caused by high concentrations of African dust, is seen as a major threat even though most of these countries are very distant from the Sahara. Surprisingly, no estimates of TSP or PM₁₀ levels near the Saharan dust source are available. Based on horizontal visibility observations which are reduced by the presence of dust in the atmosphere, TSP and PM₁₀ levels are estimated throughout the year 2000 at Nouakchott-Airport, Mauritania, using relations found in the literature. It appears that concentrations of particles are significant both in terms magnitude and frequency, as the 24-hour PM₁₀ thresholds established by the US EPA National Ambient Air Quality Standards and the EU Limits Values for Air Quality were exceeded 86 and 137 times, respectively. The average annual concentration is far above air quality standards and estimated at 159 μg m-³ for TSP and 108 μg m-³ for PM₁₀. These very high particulate levels are likely to represent an important public health hazard and should be considered as a major environmental risk.

Due to the episodic nature of rainfall and the high dissolved metal concentrations in the acid sulfate soil catchment of Clothiers Creek (NSW, Australia), active treatment was considered more appropriate than passive treatment. Alkaline reagents were added to oxidised shallow drains to remove acidities ranging from 438 to 1,837 mg/L CaCO₃. A fine limestone slurry was produced from the pounding together of limestone rock fragments within a rotating drum and, on addition to drain waters, was found to remove acidity to varying degrees of effectiveness (from 12 to 100%). The efficiency decreased as the pH of the water approached neutrality due to calcite saturation and the slow reaction rate of limestone at high pH. Hydrated lime powder was also mixed with drain water in the rotating drum though most mixing occurred once the slurry entered the drain where efficiencies ranging from 67 to 89% were observed. A powdered mixture of MgCO₃ and CaCO₃ was only 11% effective in treatment of the drainage water due to the slow rate of reaction of MgCO₃. Whilst the active treatment system was capable of treating a large acidity flux (particularly using hydrated lime) it required regular addition of reagent and the dosing of hydrated lime was particularly difficult to control. Future designs of this active treatment system should be automated to prevent adverse aquatic impacts due to overdosing.

The dynamics of macroalgal communities and the impact of sewage on their growth were studied in the tidal zone around Zhanqiao Pier of the Qingdao coastal area, in the northwest of the Yellow Sea, China, from September 2001 to September 2003. The tidal zone of the study area is divided into western and eastern sections by the Zhanqiao Pier. Inorganic nitrogen and phosphorus in seawater showed higher concentrations on the eastern side of Zhanqiao Pier than on the western side, because a sewer drains into the eastern side. The macroalgal communities on each side of the Pier showed an obvious difference due to the effect of this sewage discharge. A total of 47 macroalgal species including 10 greens, 11 browns and 26 reds was identified in this study. The species composition and biomass indicated higher values in the nutrient-rich area on the eastern side of Zhanqiao Pier compared with the nutrient-poor area on the western side of Zhanqiao Pier. Some ephemeral and filamentous species dominated seasonally on the eastern side of Zhanqiao Pier, in contrast to the western side where slow-growing species dominated throughout the year. Nutrient gradients and temperature were considered the main factors affecting the distribution of macroalgae communities in time and space. The results are consistent with the common observation that nutrient-poor areas are dominated by slow-growing rather than ephemeral algal species. Moreover, the species diversity in the whole study area had declined when compared to previous records.

The effects of harvesting on the long-term mass balances of calcium (Ca), magnesium (Mg) and potassium (K) were evaluated on a regional level in Sweden. A new high-resolution weathering database was used together with estimates of total deposition, losses through harvest and leaching. Estimates were made for pine and spruce separately and for two harvesting intensity scenarios: stem harvesting and whole-tree harvesting. The mass balance calculations showed net losses of Ca and Mg in almost the whole country for both scenarios. The losses were smaller for pine than for spruce. The K balances were mainly positive for pine but negative for spruce. Leaching was a main factor in the mass balances, especially for Ca and Mg. Whole-tree harvesting in spruce forests led to substantially higher net losses of K and Ca than stem harvesting, according to the calculations. In the whole-tree harvesting scenario in spruce forests the estimated yearly net losses of Ca, Mg and K corresponded to at least 5%, 8% and 3% of the pools of exchangeable base cations, respectively, at 25% of the analysed sites. If losses of this magnitude continue the depletion of the pools of Ca, Mg and K may lead to very low base saturation of the soils, possibly accompanied by negative effects on soil fertility, runoff water quality, tree vitality and tree growth within a forest rotation in parts of Sweden. Avoiding whole-tree harvesting can improve the situation substantially for K, but the losses of Ca and Mg will still be significant.

We used laboratory experiments to investigate surface resistance (R c) to dry deposition of ozone (O₃) on different types of soil samples collected from the arid deserts and the Loess Plateau of northern China. Furthermore, we measured the factors that affected R c, which depends on the physical and chemical interaction between trace constituents and the deposition surface, and evaluated deposition velocity (V d). There was little influence of geometric surface area, soil weight, or O₃ concentration on V d of O₃. The effect of relative humidity (RH) (i.e. moisture content of the soil) on O₃ uptake was in agreement with results reported in the literature: a distinct RH dependence of V d and little uptake under water-saturated conditions were observed. R c values for all the soil samples examined were in the range 0.21-3.3 s mm-¹ and were exponentially related to the surface area of the particles and the organic carbon content of each soil sample at RH of both <10 and 60%.

The atmosphere over Brazilian cities is influenced by a variety of emissions sources. In this study, aerosol collection and back-trajectory analysis were used to determine the influence of local and remote sources. Aerosols were collected at three locations within the state of São Paulo: one megacity and two cities in which sugar cane burning in the surroundings is observed. We quantified the major water-soluble inorganic ions and trace metals. As expected, vehicle emissions influenced the atmosphere of the megacity heavily, and sugar cane burning influenced that of the other locations. During the period of this experiment the back-trajectory analysis revealed that air masses are transported into the state from the northeast of Brazil, where biomass burning occurs. Multivariate statistical analysis revealed that the two principal components account for 48.5% of the total data variance. We conclude that local sources have a strong impact on the concentrations of particulate matter and pollutants. Remote sources also contribute to the concentrations of aerosol pollutants.

Stormwater ponds are an increasingly common feature in urban landscapes. Because these ponds retain runoff and particulate-bound contaminants from impervious surfaces, organisms inhabiting stormwater ponds may be exposed to elevated metal levels in sediments. This study evaluated temporal changes in sediment and macroinvertebrate Cu, Pb and Zn over an eleven-year period with specific attention to land use in pond watersheds. Sediment and invertebrate metal levels were quantified using atomic absorption spectrophotometry (1993 samples) or inductively coupled plasma mass spectrometry (2003-2004 samples). Sediment trace element levels did not significantly change from 1993 to 2003-2004 with the exception of Zn in ponds receiving runoff from highways, which increased from a mean of 32 mg kg-¹ in 1993 to 344 mg kg-¹ in 2003-2004. Sediment Pb and Cu generally remained below published threshold effects concentrations (TEC) except for two instances of elevated Cu in 2003-2004. Zn remained below the TEC in 1993 but exceeded the TEC in six ponds in 2003-2004. Trace metal body burdens varied among invertebrate groups, and to a lesser extent among land uses, but in both cases this variation was a function of year. In general, trace element body burdens were more similar among invertebrate groups or land use or both during 2003-2004 when compared to levels in 1993. Our results suggest sediment and invertebrate trace metal levels are at steady state in these stormwater management ponds and that risk to organisms inhabiting these ponds does not vary as a function of pond age.